Array 1 182170-179520 **** Predicted by CRISPRDetect 2.4 *** >NZ_WULF01000001.1 Klebsiella pneumoniae strain 0511135 NODE_1_length_431068_cov_24.4764, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182169 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 182108 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 182047 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 181986 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 181924 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 181863 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 181802 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 181741 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 181680 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 181619 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 181558 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 181497 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 181436 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 181375 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 181314 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 181253 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 181192 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 181131 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181070 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 181009 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 180948 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 180887 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 180826 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 180765 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 180704 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 180643 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 180582 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 180521 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 180460 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 180399 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 180338 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 180277 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 180216 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 180155 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 180094 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 180033 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 179972 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 179911 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 179850 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 179789 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 179728 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 179667 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 179606 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 179548 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27831-28643 **** Predicted by CRISPRDetect 2.4 *** >NZ_WULF01000028.1 Klebsiella pneumoniae strain 0511135 NODE_28_length_70562_cov_12.5617, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27831 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 27892 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 27953 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 28014 29 100.0 32 ............................. GCACCCTCACGTATACCTTTTGCACAGTGTTA 28075 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 28136 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [28190] 28190 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 28251 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 28312 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 28373 29 100.0 32 ............................. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 28434 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 28494 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 28555 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 28616 28 89.7 0 ..........A...........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 96.3 31 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAACTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //