Array 1 47839-49069 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030366.1 Salinibacter ruber strain M1 plasmid pSR66, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 47839 30 100.0 36 .............................. CACACGGTGAGTTTGTATGGGCTCGTGTGCGACCTC 47905 30 100.0 34 .............................. ACGTGGACAACCTCGAGAAAGCTTTCTTCGACGC 47969 30 100.0 36 .............................. GCCTACTTCCTGCACAGCCAGCCCCGCCGTAACGTC 48035 30 100.0 37 .............................. CTCGCCGCAGCAGGCACAAGCGATCCGCTCACCGCCC 48102 30 100.0 39 .............................. GGAGACTCAACGGCGTGGAATACCGCGTCAAGATTTTCG 48171 30 100.0 39 .............................. GAGCGCGTACATCTGGTATTACTGGACCCGCTTCGCGGC 48240 30 100.0 35 .............................. TGCCCTCTACGTCTCTTGTTGGACGGTCAGGGCAC 48305 30 100.0 38 .............................. ACGATACCTTTTTCGACAACGATACATTAGAGTTTAAG 48373 30 100.0 35 .............................. TACCCCCACCACGGCAGCGACGGGCTCAGTCCCTT 48438 30 100.0 38 .............................. TGGGGTTCGCGTCCACTTTGTAGAAGTGGATTCGCTTC 48506 30 100.0 37 .............................. CGGACGGCGGCCACCGGTGGAATGCCCAGCTCCATGC 48573 30 100.0 38 .............................. TCGCACCTCATTGAGAATCTCCGCACGACGCAACTGCG 48641 30 100.0 36 .............................. TTCTTTTTGAAGAGGTGGGCCGCGAAAATGGCGCTA 48707 30 100.0 36 .............................. AATAAGCCCTCGCAGGAAGGCGCTGGCGTTGTCCTG 48773 30 100.0 36 .............................. CTGATCTCAACGGAGGCATCCTTGAGATGGTAGCAG 48839 30 100.0 36 .............................. TTGGCTGCTCGCCTCTTTTCCCCACGTTTTGCGGCG 48905 30 100.0 38 .............................. TCGACGGACTTTTCGGGCGACCAGATCGACGGCCTCCA 48973 30 100.0 37 .............................. CGGAATAGCTTCGGGCCGCCTACGGCATCAGCATCAT 49040 30 73.3 0 ......G........CCAC..G.A....G. | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 98.6 37 CTTCTAATCGCACCTTTGAGGTATTGAAAG # Left flank : AGCCGGACCTTTAGTCCCCAGCCGACGCTCTGTCTTGCCGTTAGCGACGATGCTAACCGGGTGACCAATGCCATTCGGGCCGACCTGACGCAGGAAGGACGGGGCGAAGAGGCCGTCCCTGTGATCGAGACGTTCGACGGCGTATCCCTTTACACCATGCCTGCATGTAAGGGGCACGTGACCGGCGTCACTGCAAGTCCGGATGCGCTTGACAAAGCCCGTGAGGACATCGTGGACCGGCTTCAGGCCGCAGAGGCCCCAGCGTAATCGAACAGAATCTCGTCACCCCCCCATCTCGGAAGAGGTTCTCCCTGCTCAATCCCAACTGCCACCATCCGTGATTCTACGCAATCCGATGAGGGTCAAATGGATAGAGAGTCTCGTCACCCTCCCCAGGATTTACACAGAACCGTGGGGTGACGATACTAACGGTGCTGAGTGGAGCTGTGAGTTAGTCCTCAGCGCCGCTGAAGATGGTACTGGAGACCCGAAGGGGTAGG # Right flank : GGCTGCCGCAGTTGAGGCAGCGGGCATTCCTGTCACGTCTCCTGTGCCGTATTCCCCGCTGCGGCCAGTCTTCCCGCAGTCAGTCTTCCTGTAGTTAGTCTTCCTGCAGTCAGTCTTCTCTCGGCCAGTCTGCGTGTGGCCAGTCCGCACGTGGCCACTCCTCGGGCCGTGCCTAACCGTTGGGGCACCGGGGAACCAGCGCTCCGATCCCTTCCCTCGCAGTCTGACGTTCTACCAGTACCTGCTTTTCCTCACTGGCCGGACGCTGAATGTCCGGCCTCCCCGCACGTCGTTTGTAGTATGGACCTGTGTAGAATGGACCTGTGAGAACCGGCCACAGAGAACGGCCGGACTCACCTGCATTGGCATTTGCCTCGGCAGCTACCCTCTCGCAAGTATCCTCCGGGAGCCGTTCCCCGCAGGCAAGTGCCCTTCAGCAAACGTTCAGGCAAACGGCCTCGACCAGACCGATGTCCTCTACCTCTTTTTCTTCCAGCAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAATCGCACCTTTGAGGTATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 52832-54199 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030366.1 Salinibacter ruber strain M1 plasmid pSR66, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 52832 30 100.0 38 .............................. TCCCCTTGTTGATTTCCTCGTCGGAAATGCCCATGCCC 52900 30 100.0 39 .............................. ATCCCTCCTTTTTTTCGGGGCCGCGCACAAAATCTAAGG 52969 30 100.0 36 .............................. CGCTGTAACGATCGACCGATGTCTGCGAGGCCAATC 53035 30 100.0 35 .............................. ACGCCCAGCGCGAGGACGACCGCACCATCAAAATC 53100 30 100.0 36 .............................. CTCGTAGTTGTTGTGGTAGAGCTCCCGGTTGAGCTC 53166 30 100.0 40 .............................. CCGGCTTCCGGCAGGCGCTCGGCCCAGCCATCGCCCGCGA 53236 30 100.0 37 .............................. CCGGATGTTCAGCCCTTGGACCGGAGACGGCCAGAGG 53303 30 100.0 36 .............................. CTATTCGCGTAGGGGTTTTGCGAGTCGCCCCAGCTC 53369 30 100.0 37 .............................. CCCTTGCGCTTCGTGTCAATCTTGGAGTCAGGGACAG 53436 30 100.0 36 .............................. TCGTTGAGTTTGTCGATGTTTGCCTTGTAGGTCTTC 53502 30 100.0 36 .............................. GCGACTCCAACGCGTGCGCCTGCTGAAGCTCGCTAG 53568 30 100.0 35 .............................. ATCCTTCTACGCCTGTAGAGGTGACGGTCATCGGC 53633 30 100.0 36 .............................. ATGAAGGTGTTGCGGTTGATAGATCGGTTAGGCATG 53699 30 100.0 37 .............................. TGATCGCCGCCCATGCGGTCGCCGCGGCCCCGGCCAA 53766 30 100.0 36 .............................. TCGATCGTCCACCAGGGCCCGCGCTGGCCCGTGTAC 53832 30 100.0 38 .............................. TGGCTGGATTTCCCCGAGTCGTGGCAGGTGCAAATCAT 53900 30 100.0 37 .............................. CCGCCTTCGTGGCCGTCGGCGGTCACGGGCTCCCCTT 53967 30 100.0 41 .............................. ACTCCCTATTTTCACGGGCTCCCCCTCGACGGGCGAATCGA 54038 30 100.0 36 .............................. GATGCGGCGCTGCTTGCGCCCCTCGCCGCCGACGTG 54104 30 100.0 36 .............................. TCCGGCACGTTCGGGCGCGTGAACAGCTCCACGGAG 54170 30 83.3 0 ..................G.......GGTC | ========== ====== ====== ====== ============================== ========================================= ================== 21 30 99.2 37 CTCCTAATCGCACCTTTGAGGTATTGAAAG # Left flank : ATCGGGCGAGAATGCCGCTGGGCTCAAGTGCTGTTGGGCGCGTCCTCTGCTCGGAGATACCGGTTCTGCTTGGAGATGTCGGTTCTGCTCGGAGACGCCGGCCGTGGGCCCAGTGGCGGCCGTCAGGACCAGTACCGGAGGGCCCAATACCGGAAGGCCCAATACCGGAAGGCCCAACACCGGTGAGCTCAGCACCAGTGAGCCAGACGCCAATCTGCAAGGCGTACGGGCCCGAAACCAGTCGGAATTGAGGTGAAGGGGGGCTTAGCCTCGGGCTTGGCCTCGTCACCCTCCTCTAGCGCGCTTCAGGACCTGAGCCGAACGGCCTGGGTCTTCCACCGATTGATCGCTAGTACCGTGATGGACAATGGTTTACACGATCTCGTCGCCCTCCGGGGGTTGACACAGAACCGACGGGTGACGATGTTTTCCGTGCTGAAAAACCGAATAAAAGGTCGCTCAGCGCAGCTGAGGGCAGGTTTTGCGGGGCCAGTCGCAGG # Right flank : CGGTGTGCTGCACTGGTGTGGAGGGCTGAGTGGTTTACGTGCCTGACCTAACGGAAAGCGACATAAGCTCGTCTTCCAGGTTAATTCCGACATGTCGATGCCAACGCTCGGAGACGCAATTGCGCTAGCGGCGGAGGCCCATGCCGGCCAGACCGACAAGGCCGGTGCGCCTTATGTTTTGCATCTCCTGCGGGTGATGCAGGCTCAGGAATCGACCGAGGCCCGGATGGCGGGGGTTCTGCACGATCTGGTCGAGGATACGGATTATACCTTTGAGGATCTGGAGGAGATGGGCTACCCGAGCGAGGTCATCGAGGCGCTTCGGCACGTGACCAAGCGAAACGGGGAGTCCTACGCCGACTTCGCAAAGCGGGCTGGCCAGCACCGGGTTGCCCGGCAGGTCAAAACCGCAGACCTGGAGGACAACATGGACGTGACGCGGCTGGATTCGGTCGGGGAAGAAGACGCGGAAAGGCTGGACAAGTACCTCCGGGCTCACC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTAATCGCACCTTTGAGGTATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //