Array 1 8709-7157 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJOI01000010.1 Streptococcus intermedius strain A6 D8833_contig010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8708 36 100.0 29 .................................... CAAACCCTTTTAGCATGTGCGCTTACTTG 8643 36 100.0 30 .................................... TATACTGGCTTTGTCAATGTGATTGCGGAA 8577 36 100.0 30 .................................... ACCACTACCCAAAATGAGTGACACGCCCCA 8511 36 100.0 30 .................................... TTGTTAAAGGCAATAATTCCAAATATCTAT 8445 36 100.0 30 .................................... AAATTAAGGGAGGACTTGTTTAATGGCATC 8379 36 100.0 30 .................................... CATTTGTAGAAAATCAATTTTCTGAAGGGT 8313 36 100.0 30 .................................... CTGTAGATAGTGTGAAACCTTATGCAATCC 8247 36 100.0 30 .................................... AAAATTATTACATTAAAACCCAAGGAAAGC 8181 36 100.0 30 .................................... ATATCTTCATCTAAGTCGTATTTTGTGTAA 8115 36 100.0 29 .................................... TGAGTCATTATTACAATCACAATCAAATA 8050 36 100.0 30 .................................... TGGTAATAACAATAATGTCCCTAGCGATCA 7984 36 100.0 30 .................................... GTGCAACGTTTATACCGAATACCTCTCACA 7918 36 100.0 30 .................................... TGATAAGGAAATTTCCGACCGCCAAGAATC 7852 36 100.0 30 .................................... TTACACTATAACATAAAGAAAGGAAAATAT 7786 36 100.0 30 .................................... TTAATTATTTTTTATACTGTTATTATATAA 7720 36 100.0 30 .................................... AGGAACGTAATACCAGAGATAGTACTTTAT 7654 36 100.0 30 .................................... TTAATAATATAAATGTTGACAATTGGATTA 7588 36 100.0 30 .................................... TAGGTAAAGCAATAGCGAGCACAAGGCGCG 7522 36 100.0 30 .................................... ATTAAAGGATTGAATCCCTGCGGCAACCGC 7456 36 100.0 30 .................................... GGGCAGTTTATCCGCTTGCAACACTCGCAC 7390 36 100.0 30 .................................... GTAAAAAGTTCCAAGAAACTTGGGACGACA 7324 36 100.0 30 .................................... GAACAAGCACACGCACACGGAAATCGATTT 7258 36 100.0 30 .................................... AAATTATTAAACGTAAAATGCCACGTCCTC 7192 35 77.8 0 ..................AA-..C.T.G.A.....T | C [7161] ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.1 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : ACGATTACTTGAATTATTGCTCATTTGTAAAATGTTGCGAGCAACTAGAGGAGATGGCCGACAATTACAATAATTTTAGTGTCATTATTTTCCCGTCAAATGAAGGCTATCTTTATTTGAATCGCGAGAATATGGAATACGTCAATATTGTTTCTGATTTGGTTGAACATTTTTATGAATTTTCTTTTATGTATGAAAGGTTTATTGGTCAATATCCTACTAACGACGTACCTACAGAAGATGATTTCATCGTCTCTTTGCAAAAGATTTCACCATATTTATTTAGTAAAGACGTGACACATATGAGTTTATCTATCCAAGATATGGTAACCTTGAAAATTATGAACAGTTTATACCATTACAACAAGAAAATTCATTTTGCTTATAATCCACCTACTCAATTATTAATTAATTTTTTAAAAAATTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAG # Right flank : TATAGAACTCATTATTGGGCATTATTTATGTAAAAGAAATTTAATCAAATAGTTATCTATGCAAGATATTAGTGGAATTGTAATTTAGGTTGAAATGTTTTATAATGAAAAGGAACAAGTAATATTAGGGGGATTTCTAATGGAGAGAAAAATAAAAAAATCAGTCGTTGCGACCGGCTTAGCTGCAACGACAATCATTTCAGGTAGTCTATCACATGCAGTAAATGCAGAAGAAGCAAAACCAAAATCCACTGAACCAAAGACATCTGAAAAAATTACAAAACCAGTTACAGAATCAGATATTCAATCAGCAAAATTGGAAGCAAATGCTGCGAAAGTTCAGAAAGATACGCAACAGAAAGTTGTAGATCAAGTAAAAGAGGATGTAAATACTTCAAAGGAAGCAGTAGCAAATAACAAGAAAGCCGTAGCAGATGCAGAAACAGAAAAAAATGCAGCGACCTCAGAAGTGATTAGAACTGCAAAAGAAAAAGTAAAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //