Array 1 1293342-1295116 **** Predicted by CRISPRDetect 2.4 *** >NC_005085.1 Chromobacterium violaceum ATCC 12472, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================================== ================== 1293342 32 100.0 54 ................................ CTTCTGGTCGCGCAAGCCAAAGCCGTCCACGCGCGTCGCGCCCAACGCGGGCGC 1293428 32 100.0 35 ................................ TGCTCGTATGCTGACATGTGCGGTCGTAATATTGA 1293495 32 100.0 33 ................................ GGCTGCTTCCTGGGCGCGCTTGCCGGCGAAGAT 1293560 32 100.0 35 ................................ TTGTCAACGACGCTAATCGTCATCCCCGGCGAGAG 1293627 32 100.0 34 ................................ TTATGCTCCGGTGCCGCTGCAAGCTGGCGACCTG 1293693 32 100.0 34 ................................ TTCAACACCGACCTGGCCGAGGTCTACATCCCGG 1293759 32 100.0 36 ................................ ATAAGTTGAGGCCGACTATACCAGCGAACTGGCATA 1293827 32 100.0 34 ................................ GTACCCGTGTTGTCCGAACCACTGCTGCCACCGC 1293893 32 100.0 35 ................................ TCCCGCCTCTCCGTTGGTGAGCGGAGCCTGCCGGG 1293960 32 100.0 34 ................................ ACCACCGGCGGCGCTGCGCCGTCGCTGCCGCCGG 1294026 32 100.0 33 ................................ CCTTCAACGCCGCCGCTTCTGTGTTGCGCCTCT 1294091 32 100.0 35 ................................ CGATGCATGCGCTATCACGGCGAGCTATATATCCC 1294158 32 100.0 36 ................................ AATGATTTCGCCAGCGATGAAGAGCGCGGCGAGATC 1294226 32 100.0 36 ................................ AATGATTTCGCCAGCGATGAAGAGCGCGGCGAGATC 1294294 32 100.0 35 ................................ ATCGTCTCACTCCTTGATGCTGCTCGGCACCGTAC 1294361 32 100.0 34 ................................ TCGACACGCCGGCGTCGGGCTTGGATGCCATGGC 1294427 32 100.0 33 ................................ TGACGCCCCCAGCTCATCACCGATGCGCAGCAA 1294492 32 100.0 34 ................................ GGACAGCTTGGTGATGCCCTGGACGCGGTTGCGC 1294558 32 96.9 35 ............A................... ATGAACGCTACGGCCTGGGCTTCCACCTTGGCCGC 1294625 32 100.0 34 ................................ ATCGTCGAATTTGTGCCGCGCGCTAAAACCGGTG 1294691 32 100.0 34 ................................ TGCGTGTACAACATGCAGGACGTAGAAGCGGAGA 1294757 32 100.0 34 ................................ GCCGCGGCGGCACCGATCACCGCCATCTGGTCGA 1294823 32 100.0 35 ................................ AACCAGGCTTCCAGATACTGCGCGCCCAAAATGCC 1294890 32 100.0 33 ................................ CCATCAAGGGCTTTTACTGCTTCAATAGAGGGA 1294955 32 93.8 33 .........C.......T.............. ATCTGCATGCATAGACCGAGCAATAGTTTTGAG 1295020 32 84.4 34 ....T..G.C.T.......A............ AGTTGGAGGGAGGGAGCAGTCGCGCCTAGCTGTG 1295086 31 87.5 0 .........-.T.T...........C...... | ========== ====== ====== ====== ================================ ====================================================== ================== 27 32 98.6 35 GTCGCGCCCAACGCGGGCGCGTGGATTGAAAC # Left flank : AAATAGGAGGACCGGAAAATGATGGTGCTGGTCAGTTACGACGTCCGCACCCAGGATAAGGAGGGTGCCGTTCGCTTGCGCAAGGTGGCGAGGGCATGCCGCAATTTTGGCCAGCGCGCCCAGTACTCGGTGTTCGAAATCGAAGTGGAGCCGGCGCAATGGGTATTGCTGCGTGACAAGCTGTGCGCGTTGATCGACCCCAAGCAGGACAGCCTGCGCTTCTACTATCTAGGCGGCAACTGGAAGCAGAAAGTCGAGCACGTCGGCGCCAAGCCCGTGTTGGACCTGCAAGGTCCGCTGGTTTTTTAAGCGCGGATGCCTGGCGCGAACCGGAAGTGGCAGCCGAATCCCTAGCAGGTTCGCGTGGGCGGGGGAGGCCCCGCGCCGCCTGCATCATTCTCCTTGAGCCCGGTGGGTAGGGCTTGGAAATCTGCCTCGCTGATCAGGTTCGCGTTTTTCGGTTGAAAATACCATTGGAAACAAATGGTTTGTAGTACCCA # Right flank : CAACATGGCGGCGTTGATTAGCATGCGGATCTGGGCCTATCACGATGTGGATTAGCTGATGACCTGCATCCATGCTGGCCGAGAGCGTGACGGTGTTTTGCTGACTGAAATGGGGACTTATACAAGTGCTGTGATGGTGTTTCCATAGACTATTTTCAGAGCCGCTATTGGGGGCGCATTGTTTTTAACCTGTACTTTGGTGTAGGTTATTCAGCTTTCCGGCTAGGTTGCCTTGTAGGTGGTCTGGTATTTTCATAACATTCTTAATCTTCTTTTTAGTTCAATGACATACCCTCGCTGGAGGGTATTTATATTTGGATTCCTGATGGATCTGAACGCATTGCTAGCCAGTTTTGCCTCCGCTTTTAGTCAAGAACAACGGTTGATCTCGCTGGAGTTTGGCGGTGGTCATATCGCATCTGAACAACTGCTGCCGCTGAGCCTGGATGGTGAAGAAGGCATCTCTCGATCTTACCGTTATACGCTGACTTGCCTGTCAC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCAACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.20,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1452711-1454024 **** Predicted by CRISPRDetect 2.4 *** >NC_005085.1 Chromobacterium violaceum ATCC 12472, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1452711 29 89.7 33 ....C.......C...............A GCAGAAGAAAGCCGACAAGGCAGCGCCCGCCGC C [1452714] 1452774 29 93.1 32 ....C.......C................ GAGGAGTACGAGGCTGCTCGCCGGTCGACGCA C [1452777] 1452836 29 93.1 32 ...C........C................ CCGACCGGATCCCGCGCGGCGTCTGAATCGAG 1452897 29 93.1 32 ...C........C................ TCGCCCATCTCCTCGCGGCGATGCTTCTTGCC 1452958 29 93.1 32 ...C........C................ CGCCGGCCTCGCAGCCGGCAAACCGCCGAGTC 1453019 29 100.0 32 ............................. GGTGGGAATCAGCCGGGCGCGATTGTGGGCGT 1453080 29 100.0 32 ............................. CTTGAGAGCAATCCGTTGACCTGGAAACCGAT 1453141 29 100.0 32 ............................. CTCCATGGCCTGGCCGTAATCGATGGCATTGA 1453202 29 100.0 32 ............................. AAATCCACCACCGCGACCGATAGCGCCACCCG 1453263 29 100.0 32 ............................. TTCACGGTGAGCACGCCCTCGCAGGTAATCAG 1453324 29 100.0 32 ............................. TGATCCGGGCGGAATACAACCACCACGGCCGG 1453385 29 100.0 32 ............................. CTCCAGACTGGTCGTATACACCTGACGGATAT 1453446 29 100.0 32 ............................. AGCTCGCTGAGCTGTTCCGCCTCATCCTCGTA 1453507 29 100.0 32 ............................. GCTGGCACGACGCTTGGCGCGATTGTGAAGAA 1453568 29 100.0 32 ............................. GTCGTTACTGCAACGGAGGCAAAACAGCATCA 1453629 29 96.6 32 ............C................ TGCGGCAGACCAAGCCGACCGACAAACCGGTC 1453690 29 96.6 33 ............C................ GCGAGACGATCATCTTGCCGCAACGGCGCGGAA 1453752 29 96.6 32 ............C................ GCCTCCCACTCAGCAGGGCCCGCCGGCTCGTG 1453813 29 96.6 32 ............C................ TCGTCGATCTCTATCACACCGGTCGCCGTGGC 1453874 29 96.6 32 ............C................ CAATCGCACCAAGGCGTCGGCCGACAACATCA 1453935 29 89.7 32 ............C............G..A AAGCCAGTGCCTCAAGGCTTGAGGGTTCGAGA 1453996 29 69.0 0 A.A.........GTT..........GTGA | ========== ====== ====== ====== ============================= ================================= ================== 22 29 95.6 32 GTGTTCCCCACGTACGTGGGGATGAACCG # Left flank : TGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGATGCCACCGCCAGGCTCAGCGGCTTGCCCGGGCCGATCAGGTGCTGCTGGCCGATCACCTGATCGAGCGCCTGAGGACGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTCGGCGGGATGGGGCGGAGAAACAGTATACCAGTTGGGGACAGGCATGAAAAAAGCGCCGGCCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTACGCTATGGCTGCTGACCTAGCCTAAGCCTTGCTGTTGAGGAAGCTTGGCGTTCAGCATCAGGGGCGAGCAGTGTCGGACCCTTGTGCATGGGACGATTTGCCAAGGCCTGGCGGGGTTTGCCGTGCTGATTTGAACGCCGCTTCATGACTGGGAAAATCGGTAGAATTTTAGATCGGGTTTTTGTCTTTAAAAATCAGTAGCTTGAAAATGGT # Right flank : ACGGGGGACGGCTGGAGTGGCGTCGCGGCGCTGCCAGTCCGGCCGCGTCCGGCAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTTCTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTTACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGATCCAGCACCACTACGTCGAACTTGTCG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTACGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1461308-1462500 **** Predicted by CRISPRDetect 2.4 *** >NC_005085.1 Chromobacterium violaceum ATCC 12472, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1461308 29 96.6 32 ...........A................. TCTGGCCTCAGGGCCATCGACATGGCCAAAGC 1461369 29 100.0 32 ............................. ATGGGATAGTCGCCCAGGAAATCGAACACCAG 1461430 29 100.0 32 ............................. ACGTTATTGCCTGGCAGGCCCAGTTCCGCAAA 1461491 29 100.0 32 ............................. CCTAAAGACCTAGTCGGCCAGCCCTGGCGCTT 1461552 29 100.0 32 ............................. CCATGTGCGCCGTATCGCATCTTTGTCGCTTC 1461613 29 100.0 32 ............................. GCTGATCCGAGTTTGCCGCCGCCGCATCAAGT 1461674 29 100.0 32 ............................. CGAGAGGACCGTCCCCGCCGAGGCGTTACCTA 1461735 29 100.0 32 ............................. GGCCGGTTGGAGAGCCTAGGCGTTAGTGTCTT 1461796 29 100.0 33 ............................. GAACCCGGCCTGCACCATCATCAACGAGACCAG 1461858 29 100.0 32 ............................. ACCGGCCACCACCTGGCCGCCAGCCCGGTTCC 1461919 29 100.0 32 ............................. GTTACAGATCTTGGTCAGCTGGTGGCAGGCAT 1461980 29 100.0 33 ............................. CACTGAGGCTGAAAAACCTTGGCCTACTCTGCT 1462042 29 100.0 32 ............................. GTGGAAGCGTCGATCTTGTCGGTCGTTGCGAT 1462103 29 93.1 32 ............CC............... ACCTATTTCTACATAGACTGTATGTAGCAGAG 1462164 29 93.1 32 ............CC............... TACGCGCTGCCGTGGAACAAACAGCGGGAGGG 1462225 29 93.1 32 ............CC............... CAGCTGGTTCGATACGGCAATTCGGGCCTGAC 1462286 29 93.1 33 ............CC............... TACATCACCATCCACGGCGGCGCGAACGTCGGC 1462348 29 93.1 33 ............CC............... TAGTAATGGCCATCTGGTGCTCTGGGAACAAGA 1462410 29 93.1 33 ............CC............... GGCATGACCGGATTTCGCATCGACAGCCGGCGC 1462472 29 75.9 0 ............CC......A...TG.TT | ========== ====== ====== ====== ============================= ================================= ================== 20 29 96.6 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAGGGCCCGCCTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGTTTCGCCGACGGCAGCCGGCTCACCGCCAACTTCGGCCCCGCGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTGGCGGATTGCGCTGGCAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGTCGTGGCGCGGCGGTTTCCCATGGCCGGCGAGCGGCATTGCCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTGGGGTGGGTTTTTGTCTTTAAAAATCAGCATCTTGAAATTGGT # Right flank : TCTGCCCGTCTATCGCTTGCTTAATCCACGGCCGTCGCGTTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGCTGGCGCTGGCCGGCCATTCTCGCCGGTGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTGGCCGGCGCGGCAGCGTTCGCGGGGATAGAGGTGGTCAGCGGAGCCGTCGGCTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1902571-1900978 **** Predicted by CRISPRDetect 2.4 *** >NC_005085.1 Chromobacterium violaceum ATCC 12472, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1902570 28 100.0 33 ............................ CTCACGGCACATCAACGAATAGAAAGGACAAAA 1902509 28 100.0 33 ............................ TGATCTTGGTAGGTCGCCTGGATCAGGTAGGAG 1902448 28 100.0 32 ............................ TACTGCTGGGGCGCGGTGTTCGCGCTGGCCGG 1902388 28 100.0 33 ............................ AGTCATCGGTGCAGAGCATCGCCAACGCGACGG 1902327 28 100.0 32 ............................ GACCGGGGGCGTCACGACGGTGTCCGGCATCG 1902267 28 100.0 32 ............................ CATCCGTCCGGATCGCCGTAGCTGGCAAACCC 1902207 28 100.0 32 ............................ AGCACCGCATCCTCAAGGCGGCATCGGTTTCA 1902147 28 100.0 32 ............................ ATCTGCCGCCCTGCCGTGACGCGCCCCTTCGC 1902087 28 100.0 32 ............................ TGTCCAAGACGCCACGCATACGTGATGTTCAA 1902027 28 100.0 32 ............................ GCCCGAACCGCCATTGAGCGTAATGCTGACTC 1901967 28 100.0 32 ............................ TGCGCAATTCAACCCTGCTGCGGCTGTTGAAT 1901907 28 100.0 32 ............................ TCGCCCAGGTGAGTTCGGTGTCGATCACAGCA 1901847 28 100.0 32 ............................ TCCAGCGCGCTGGGCAAACCCAACTACTACGG 1901787 28 100.0 32 ............................ ACACCCAGACACCCATATAGACGTCACACCGA 1901727 28 100.0 32 ............................ AGGTCAGCCCGCGCTCGCTCTCGCTCGAAAAC 1901667 28 100.0 32 ............................ TACCTGAAACCTGGCCATTTCATGAACCCAGA 1901607 28 100.0 32 ............................ AATGCCAATACCGGCAGCAAAACAATCAATCT 1901547 28 100.0 32 ............................ ACCTGGAGAGCAAAACCCACTCGAAAGCCCCA 1901487 28 100.0 33 ............................ CGGAACCATCACAGGCAATGCACGGTCGATGAC 1901426 28 100.0 32 ............................ TACAGGTCGCAGGTAAGCCATCCAAGCGTCAG 1901366 28 100.0 32 ............................ ACACTCGGCCGCGCGGCAGCAAGCGCTGCAGC 1901306 28 100.0 32 ............................ ACCGCCGTAATTGGTCCCGTTGTTTGCTGCGC 1901246 28 100.0 32 ............................ ATCTCCAAAATGGAAACAGGCCATTTCTGGCC 1901186 28 100.0 33 ............................ ATGAAATTATGGGTGACGCCCAAGGAGCGTGAG 1901125 28 100.0 32 ............................ CACCTCCAGGTCCACCGGTCTACTGTAAATCG 1901065 28 100.0 32 ............................ ATCCAATGCCAAGGGGCTGTGAACTTCGGCAT 1901005 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 100.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CCGTTGGCTCAGCGGCTTCGCCGACCACGCCATCGTCGGCGACATCCGCCCCGTCCCCGCCGGCGCAAGCGCGGTCAGCGTGCGCCGCCGCCAGGCCAAGAGCAGCCCCGCGCGCGCGCGCGACAGGCTGATGCGCCGCCAGGGCATCAGCGCGGAAGAAGCGCGCCGGCGGATACCGGACGAAACGGCGCAGCGGCTGAACCTGCCCTACCTCACCGTAGACAGCGCCAGCACCGGCCAATGCTTCCGGCTGTTCGTCGAGCAACAGGCCGCGCCAAGCATCGCCGCGGGCAGCTTCAATGCCTACGGCCTCAGCGCCGCCGCCGCCCTGCCGGCTTGGTAGCCCGAAAGGGTCGCGGCCAGGCCCGCGACCCTTTTCTCTCCCGCCAACCTCCACCTTTTAAAATCAGAGACTTAACATCATGCCGGCAAAAAGGGTTTTGCCGGCAGAAATGGCTGACAGCCTTGCCGAACAAGGCTGATGGGCAATAAGATCTCTA # Right flank : GTAGTACGCACGTCCGTCATTCCGGAGCATTACGCGCTGCGCCTGGACACCTGGATCACCATGCACGAGGACCTACGGCACAATCCCGCCTGCAAGGCGGTGTTCAGCGCGCTGGTGGGAGGCATGCGGCGGCATGCCGGGGATGTGTCCTCCGGCGGCTGTCCGCCATGAAAAAAGCCGTCCCGGCATTGACCCGGAACGGCTTCTTCGCAGCCGGCCGCCCTTACTTGGGCGCTTTCGCCTGCGGCAGCCGCTGCAGCAGCGCGAAGGTCATGTTCTGCTCGCGCGGGCGGTTGCCGGTCCACAGCACCTGCCAGCCTGGCTCGGCCACGCCCTCCTCGCTGCTGCGCACCACCAGCCAGTAATCGCACGGCGGCGTCTCCCCGGATGGGAAGGACAGCAGGTCGATGCCGGCGTAGTAGCGCCAGCTGATCATGGCCAGGCTGTTGCGGTTTTCCGTCGCGATGCAGGTGGCCGTGGCAGGCAGCTTGCGCAGCATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //