Array 1 77403-73759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSIT010000120.1 Lewinella lacunae strain KCTC 42187 1436_77828_9638951_1289...955+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 77402 37 100.0 35 ..................................... CGTATTGACGGGTCCGGATCCTACTTTGATCAACG 77330 37 100.0 34 ..................................... GATGCCTTAGCGCTTCACCGCGCGGCCTTAATTG 77259 37 100.0 38 ..................................... ACGCTCATCCGTGGTGGGCTCGACCAAAATGTTTACGA 77184 37 100.0 34 ..................................... GCGTCAATGCTGGACGCACGGGCCGTTAGTAATG 77113 37 100.0 36 ..................................... CGTCGCACACGGGGCATACGAGATCGTATTTCGATA 77040 37 100.0 34 ..................................... ATAAATTTCCTACATTATCATTTACTGAATATAG 76969 37 100.0 35 ..................................... TGAAAATTTATGACGTAACCTTGTCTGGCGAAAGT 76897 37 100.0 36 ..................................... ACAACAAAACACCAACGGACGTTGGACCACCTATGG 76824 37 100.0 36 ..................................... ACAGAAATTTTGGTAGAAGAATATGTATACCAAAAG 76751 37 100.0 34 ..................................... GATAAAATGACTGCTTCTGTTCGTAATCAACAAA 76680 37 100.0 33 ..................................... TATCCTTTGACTATGTTCGGGCTTTACAGTCCG 76610 37 100.0 34 ..................................... CCGATCTTGTTGACTTTTCCTTTACGGAAGATGC 76539 37 100.0 36 ..................................... TGTTTTCCCTTCTTTCGGTCGTGCAGCCAACTTTGT 76466 37 100.0 36 ..................................... CCTTTTAGGTGTAGTCGGAGAGCTTATGCTCTTCGG 76393 37 100.0 34 ..................................... CAAAACTTATTCAACAAAAAAGAAACCATGAAGT 76322 37 100.0 38 ..................................... ATGTAGCCTTATTACCCAATGGTGATGAAGTCTTAGTT 76247 37 100.0 36 ..................................... GTGCGGGGAAGGGATCTCTCGTAACTTATTATGCAG 76174 37 100.0 36 ..................................... ACGGTTAACCCCGGCTGAGTATGGATTGTGAATACA 76101 37 100.0 36 ..................................... TGTATGGCAAAGACCCTTACACAAACTACGGCGAGT 76028 37 100.0 35 ..................................... TTGGATGGAATGCTGTGGACATTGTGCTTATGAAG 75956 37 100.0 36 ..................................... CACCCCTCCATAATTTTATTAACAAAAAAAATGAAT 75883 37 100.0 35 ..................................... GTTACCAGTCTATTCTTGTCCTCCTTTTGACACTG 75811 37 100.0 35 ..................................... ACTAAATCATATAACATGTTAAACAATGATACGCT 75739 37 100.0 35 ..................................... GCTGCGGACTACGCCACCGAAACGGCTAAAGCCGA 75667 37 100.0 35 ..................................... AAGTGTATTTTCGTCAGAATGCCTTTCGGGGATAT 75595 37 100.0 36 ..................................... ACGGCTAAAGCCGAAAGGCTAGCAAAGGCTGTCGCA 75522 37 100.0 35 ..................................... ATCTACCACAATGTTAGTTAACAACGTTACCCCAC 75450 37 100.0 33 ..................................... CTAGAAACTTGCACAATACGCCGAAAGGCTGTA 75380 37 100.0 35 ..................................... CGTAATCGCCCTTCCGCGACGTGCGGCCAGCAACA 75308 37 100.0 36 ..................................... CAATGAACGTTATCAAAGTGCTCGGTCGCTTATTCT 75235 37 100.0 35 ..................................... TGAAAAATATCTTGCTGAATGGTATAATTCATTGC 75163 37 100.0 34 ..................................... AAATCACTTTTCACCTTCGCGCTTTTCTTCTTTT 75092 37 100.0 36 ..................................... CGGGCGGGAAAAAATACGGAGGGAAGGCCTTAGGCG 75019 37 100.0 35 ..................................... GATATGACGTGAACGGGAACCGCCGAACCTTCGTA 74947 37 100.0 36 ..................................... TGGCCAGTAGAGCCTGTTGTCACGGGTGGCGAAATA 74874 37 100.0 35 ..................................... CGAATAGTCCCACCCCACCCCGCTTTAATGCCTGA 74802 37 100.0 33 ..................................... CAAAGGCCTCAACACCTTCATTACCGCGCTGGA 74732 37 100.0 36 ..................................... TGTCATAAATTCAACCGTTAGGAAAAAATAACATTT 74659 37 100.0 34 ..................................... TATAATGAATCTGTTTCAAACGGCATAACTATTT 74588 37 100.0 36 ..................................... CTCCGTATGGAACGGCGCTTGGCGCTTAGATTGGAA 74515 37 100.0 35 ..................................... AGCCTAACTATCTTTTTTTACAAATTTAGCAAATA 74443 37 100.0 35 ..................................... CAAATGGCCGATGCTTTGGCTCCCTATTTCCAGCA 74371 37 100.0 35 ..................................... CACTAACGGGTATAACGGACTTAGCGAGGCTTTTA 74299 37 100.0 36 ..................................... TACATTCCCACTAAATAAAATGACTTACTCCATCCA 74226 37 100.0 34 ..................................... AGAGTAGAGGCAATCCCTCACAAAAACTTTCCCT 74155 37 100.0 36 ..................................... TATTTGCCAACGGAAGTACTGGCGGCAAAGTGGGAT 74082 37 100.0 35 ..................................... GTTTCTTTCTTTTCCTTTGTGTTTTTGTTGTTGCT 74010 37 100.0 36 ..................................... CACCACTTAGCCGAACTGCTGAAATAGGTCAATAAA 73937 37 100.0 34 ..................................... TCCTGCCAAATATCCTTTGCCCTTACCTGCCATA 73866 37 100.0 34 ..................................... ACCAAGATGTTATGGCCTTAAATATGGGGGCAGT 73795 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 51 37 100.0 35 GTCTTAATCCTTCTTTTAATGGATGTGGTTCCGGAAG # Left flank : AATCCTAAAGGGACCGCTGGTGATGAGGTGATCATTTTTCTGACGCGCCTCCGACCGGTCAAGAAGACTGTTGACCAATACATAAAGCGTTGGCGTATTGAGTGCTTATTCCGCCATCTCAAATCCAATGGTTTTGACCTAGAAGCGATCAATTTCAAACCCCTTGGGAAAAGCAACTTACTAATGGCTATCGTAGGGCTAAGTTACGCCATGACGATTCGAGTCGGATGGGCGGCACGCTCGACCATCCGTATCATTAAATATGACGAGAGTACTACCTTCCCCGCAGAGTCAGTATTTCGCCGAGGGCTAAGTTTGCTGACCCCGTGGTGTGCTAAGATTGAGCTCTTTATCGAACGGTATTTATGTCTAGATGATGGACGAAATCACCCCATCGTCAAAAATGTAGAGTAGTATGGTAAATG # Right flank : AGCATTTTTTGCAATCGACTGACTAACAAGACCTTGCCCACGAAAGAGCGGCCCACGGAAGGGGCAAAAGGGGCTGAAACTGACTTTTCTTTTGAACGGCTCATCGCAGGCATTGGAGGTTAGTACGGCGAAGTTACTAAAAAAATAGCGTATTCGGTGGGTCCGTGATCAGCTGAATGTCCACGTTTTGGCCTATCAGTTTCATCGCGCGCACGTCGCTGCTGTTGACGGGCACCAGGATGATGCTGTCCTCGTTGGCGTACAGCCCGTTCACGTCCCGCAGCGTAGCGTGGATCTCCTCAAAGCGGGCGTTGGCCGTCTTGATCAGGTAGACACTCTTCTGGATGCGCGTACAGCCCGCGGTAATGAGGTAATCGGCGATTTCCCGCCGGACTTTGTTGTCGGTGATGTCGTACATGATCAGGTAAACCATATTCGTTGCTTTGATGGGGTCAGCCTGGAGGATGCCGAGGATTTGGGCCACCCGCTCACTGAGCTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTCTTTTAATGGATGTGGTTCCGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 123738-120385 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSIT010000135.1 Lewinella lacunae strain KCTC 42187 1452_124643_15714788_1294+4861415+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 123737 37 100.0 36 ..................................... CTTAATGTAAAGTTTATCATGATTGTTTATTTTGAA 123664 37 100.0 36 ..................................... CCCAGGTAGGCCGGCGGTGAACATTGAACGCTCAAC 123591 37 100.0 32 ..................................... TAACAACAACGCATTTTAAAGCTCTCTGTTGA 123522 37 100.0 36 ..................................... ACCCATACCTGCCCAAATTAACCATAATACTTCAAA 123449 37 100.0 35 ..................................... CCAGTGGTAGAATGTACCGTCTTCGCGCTCGAAGA 123377 37 100.0 35 ..................................... TTGTGCTGCCGTTAACACTAATACCCCAAATACTC 123305 37 100.0 35 ..................................... TGTTGGGAAATAGCCCCATTCGTCCCATTCCGCTG 123233 37 100.0 35 ..................................... AGTTTTTATTTACCGCTCCAAACGGACCAAAATCT 123161 37 100.0 35 ..................................... TGGTCGCTGAAATCTTTGTGGTAGCTTGACTTAGC 123089 37 100.0 35 ..................................... CGTATTCTTCGATGTTGTACAGACGTGCGTAGTGT 123017 37 100.0 34 ..................................... AACCCGTTACGGATAAGCGCAACCACCGTGTTAA 122946 37 100.0 34 ..................................... GGGCGCGACGTTAGTCAACGTCGTAAAAGTCAAC 122875 37 100.0 34 ..................................... GCCGCGTCGTTGACCATAGCGACCTCCTCAAAGG 122804 37 100.0 37 ..................................... ACACCCCGCAGCGCTTTTGCGGCCTCTTCTCCCTTCG 122730 37 100.0 35 ..................................... TTTTTCATTCCCTTATAGAGCAAGCGCATTGCCGC 122658 37 100.0 34 ..................................... AAGTGAGAGGAAATAAACTCGTCGCCTTCTTTGG 122587 37 100.0 35 ..................................... CACACCCCTTTGGGTCTGCTTCGATTTGAGCTGGG 122515 37 100.0 36 ..................................... TGGGTGGCGGGGGATTACCTGACGAGCCTTACCCCG 122442 37 100.0 33 ..................................... TACGATGGGTCTCCACCCAGCACGTTGTAGCGC 122372 37 100.0 33 ..................................... TAAACCCGATGCCTAAACGGTACGTACCGTTAA 122302 37 100.0 35 ..................................... TTTTGCCAAAGGTTTTTTTATACCCCATTGGTTTG 122230 37 100.0 36 ..................................... CAACTTTTTTTTGCATTTATTTTTGATTTTCCGCAA 122157 37 100.0 35 ..................................... CCCGACCGTGTTGGCCTAGGCTTACAGTTGTGCTA 122085 37 100.0 33 ..................................... TTGAATTTTGGTTTGCCTGTTTTTTTGTTGGTG 122015 37 100.0 36 ..................................... ACGGGGCGTAAACGGTTTCAGGTTCGTCTATTCGCC 121942 37 100.0 36 ..................................... TCATCGGAATTAACACGAAACATAACATCCCCACAG 121869 37 100.0 34 ..................................... GCCGTACTGGTCAACACTTGCAGTGTCGTAGACG 121798 37 100.0 36 ..................................... GAGTAAAGATTTCATTTGTGGTAAGTTTTGCGGGAG 121725 37 100.0 36 ..................................... CGCCTCCCACTGAGCGATGGACACTTTGTTGGCTTG 121652 37 100.0 35 ..................................... CGTACATAATTCTTCTTTTTTGATGTTTTCGCGCA 121580 37 100.0 36 ..................................... TTCGGGAAGTGTGTATTTGCCGTTTTCTAGGCAAAA 121507 37 97.3 35 ....................T................ TGTGTATTTGCCGTTTTCTAGGCAAATTTTAAGCA 121435 37 100.0 36 ..................................... TAGGCTTAATTCGTCGTTGTGTTGCAATTCGGCGTT 121362 37 100.0 35 ..................................... TGAACGCGCGCCGTGGTTACGACACGCGCTGAATA 121290 37 100.0 35 ..................................... CTACCTCGTCAATTTTGGTGATGTCGAAGCGCTTG 121218 37 100.0 35 ..................................... GTCCAATTGGCGTCGATGAAATCTAATGCGAACAT 121146 37 100.0 33 ..................................... CAGGTGCTGCAACAGCTTGGCGAGGGAGGTAAG 121076 37 100.0 36 ..................................... CCCCCGACCATGTAACTCTCCCCATCGGGGTGATAG 121003 37 100.0 36 ..................................... CCCAATGGGGGCGGATACCAGCGGCCTGGGCGGCTT 120930 37 100.0 35 ..................................... TGGTGTTTTAGCATGTTTTGGAGCTGTTCTAGGGT 120858 37 97.3 35 ............................A........ TGGTGTTTTAGCATGTTTTGGAGCTGTTCTAGGGT 120786 37 97.3 35 ............................A........ AAGTCGCCGTCTTGGCCGTGGGCCAAGACGAAGCG 120714 37 100.0 37 ..................................... CAAGACGCGCTTGCGCCTCGGGGGAGAGAATTACAAT 120640 37 100.0 36 ..................................... AAGACGATTTCTTGACGGTACATTTAGTTGCGATTT 120567 37 100.0 35 ..................................... GCCGTAAGGTAACCCGTTTCTAACACAGCTAACAC 120495 37 97.3 37 ....................T................ CGCGCAACGGCGCGGCCTTGGCCCGCTCGCGGGCGCG 120421 37 97.3 0 ...................................G. | ========== ====== ====== ====== ===================================== ===================================== ================== 47 37 99.7 35 CTTCCGGAACCACATCCATTAAAAGAAGGATTAAGAC # Left flank : GTTGTTTCCAATAGATGGGGATGGCCACGGAGCCGACTAGAACGCTCAACACCATGTAGTGATACTTTTGCTGACCTCGCTTCCAACTGGTACCATCCAAGAGTAAGTGAGTAAAACGAAAGCGACGAAGTAGGCTCAGCGTTCGTCGCTGAACGTCAAGAATAAAGCCAGCGTTGTCTTGCCAGGCATCGAAAAATCGAATCAATCGCTGATAGTGACTGGCGGGCTGAACAAGCGGTTTGTCGAGGGCCAAGCCGACATAATCCTTGAGTTTCCATAGGCTGCAAGTTCTTCCCAAAATGAGAAGTTGGCAGATCAAGTGAAGGTTTTTTGTAGCACCAAGACCGTATTTTCCGTACAAGTCAGTAAATTTACGCAGTTGCGGAGTGAGCATGAGTTGGAGTTGTGGTTAACCCCTAAGGTAGTGCTCGCTTCGCACTTTCTAAAAATGTAGAGTAGTGTGCTCATTTACATAAATAACTCCGTGATCAGTTGGTTCA # Right flank : AGGGAGTTCAGCTACGTTGATCATTCTGCATAATTGCGGTAGCGGGCAGGCCGTTCCGTTTTATCAACAAAGTCTTTGCGCAGATTATTTTTCCCCCTTTGTGCCATAAACTATGCTGGAGACAATGTGGATAAATCTATGGAAGGCGTTGCGCCGTAGCGACCTTCCAGGTAGCGTTTTTCCTTATCCTTATCCGGTTGGCCCGGGTTGCCTTCGAAGTAGTTAAAATCAGACAAGGAATAGACGGTAGTAGCCCCCGCTTTGTTTTTTTCAACGAAATTGATTTGATCGCGGCGCAGGGGTACGGAGTTGAGCAGGTTGGTATCGTGGGTAGCCAGGAGCAGCTGGGCCTGCTTCGGGTTGGTTTTGGGGTCGAGGAAAAGTTTTACCAACGCAGCCGTCAGTTTGGTATGCAGCGGGGCTTCAATTTCGTCAATGATCACTACCCCACCCTTGCATAGAGTAAAGAGTATGGGCGGAATGGTATTGATCACCTTGCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCGGAACCACATCCATTAAAAGAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 27304-26506 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSIT010000096.1 Lewinella lacunae strain KCTC 42187 1404_45710_8607567_1073...555, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 27303 36 100.0 31 .................................... CTGTTATCTCGTATTGGGACACTGTGATGCC 27236 36 100.0 33 .................................... ACAAAGCCGTTAATGCTGCGGTCATTATACCAG 27167 36 100.0 32 .................................... GGCGATTAACGTCAGCAGCGCGAGCTGACGGA 27099 36 100.0 34 .................................... TCTTCATCTCACCGTGAATCAGACTAAGTCTTCA 27029 36 100.0 35 .................................... TGATTTCATGTAGCTATGGATCCCCCCATAGGAGG 26958 36 100.0 32 .................................... ATAGACATGTTTACATGTTTTGCCCCGTAGGG 26890 36 94.4 33 .............T.C.................... CCTTTTCATATTGGGTCTGTTGTGCTCACTCCC 26821 36 100.0 33 .................................... CATCGAACGAGGCGAAGTTCAGCCCGTCACGGC 26752 36 97.2 33 ....................C............... AGCGACATTGCTTTGGGGTTAAGTTGTTATATG 26683 36 91.7 34 ......A....................A.A...... TCCGTTGAACCAGGCGATGTCGTAAGACATCGCT 26613 36 100.0 36 .................................... CTGAAACTCTCCACTCAAGGGGGGCGAAATGTGAAA 26541 36 91.7 0 ....AC.........G.................... | ========== ====== ====== ====== ==================================== ==================================== ================== 12 36 97.9 33 GTCGGAGAGGCCTCCTTTGCGAGAGGTGACTACGAC # Left flank : CGAGGTCTTTCCGGCGGTTCCGGACGTCTCGTCCGGCAAATCACCGGACGGGACGTCCGGAACCGACATCCAGGTCCGCGTCCTCGGCGTAGACATTTTCGATCCCCGTACGGGCAAGGTCCGGTCTGACGACGTAGACGGCATCGCCTGTTGGTTCATCGATACGAACTATAATGGGGAGGCTTTTTTCGTCCGCCACGCCTACTTCCTCGGTGCCAACGACCCCTACCAATCCCTCAAAACCACCCTCAAAGCCGAAGTGGACCGCGAAGCCTGGGAAACGCTCAACTCGGATACCAGCCGCCCCTTCCCCAAGCCGGAGACGGGGCGGATAGCGATCAAGATCATTAACCATTTGGGGGATGAGGTGATGAAGGTGGTGAGGGTGGGGTAGGGGGGGGGATGCAAATTTAAGACTATATTTGGTGAGTTTTCAACAAGTAGACTTATGTTATTTTCTTCATTATCAGCCCGTTACGGGCGAAATTTGACCGTTAAGG # Right flank : TAAAGTTTTACCCAAAGAAAAGGGGCTGGTCCGTGTATTACCACGAACCAGCCCCTTTTAAGAAGTTAGCTACTGACTTATTCTTTAAAGTCTATCCTAGAGTCTATCAGCATATTTTTAAGGCTGGTGGTTACTTTTTCTCTTAATTCAGGAACCCTTACGTCCGCGATTCCTTGGTCGGTGAGAAGTACTTCGCTCACACTTTCATCCGAAGACTTAAGTAAAATGCTATAGACTATGTTGCGAAAATGATAAAGACCATCTCGCGATTCTGCGGGGATAAAAATTCCATGACCTTGTTGAAAGTAAGCATCTGGAAATTTTATCAAAAAATCCCTTGCTTGTGCTTTCCGGAAGTACCAGCTGTTTTTTCGTTTTACGAAAACGGTTTTATCGTTTTCCCACATGGATAAATAAGCAAGGAGTGGCCAGATCCCACGGCAGGCTGCCAGCTTGCTCTCGTACCGTTGTTGCTCCAGATTCAAGTCAATCTCGCGTTT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAGAGGCCTCCTTTGCGAGAGGTGACTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 227037-231548 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSIT010000100.1 Lewinella lacunae strain KCTC 42187 1409_368092_50706862_1073...852, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 227037 37 100.0 36 ..................................... GCCTGGACAGCGTTGAGGGCTGGGGACTCGATGATG 227110 37 100.0 36 ..................................... CGGAGCGCGAGGAAGCCGCAGAGAAGGCCAGAAAGG 227183 37 100.0 34 ..................................... TTGCTGTTGGTGACCTGGAGGATGCTGCTGATAA 227254 37 100.0 37 ..................................... GGTTCTTGCGGTGGGCTGCTTCGCGCTTGCGCTCTGG 227328 37 100.0 38 ..................................... TGCAGTACTACTTCGGCTTCCTCATTCACCCTGCTCAG 227403 37 100.0 34 ..................................... TCGAAGACCGACTCGTCCTTGAAGTCTTCGCCCT 227474 37 100.0 37 ..................................... CCCAGCAGATTGAGACCATCCAGAAGTTCACGGGCAT 227548 37 100.0 36 ..................................... TTGGAACTTTCGGTAAAAATACGTCGAAGGTTTGGC 227621 37 100.0 36 ..................................... CTGCATCTCAAACAGCGTTTGAGCGGCTTTCTTCTT 227694 37 100.0 38 ..................................... CTTCCAAATCGACAACAATGAAAAAAGCGAAAATCATC 227769 37 100.0 36 ..................................... TTGATGTGGCCCACTCCTGTGACAGCAGGGTGGGCT 227842 37 100.0 37 ..................................... TCGAACAGTTCCGGGGATACCAGGTAGTTGAACTCTT 227916 37 100.0 36 ..................................... CTTTTTTGCGTATGGTTTGGGGTGGGGTAGGGCGCG 227989 37 100.0 36 ..................................... ACGCGAACACCAGCACTCAAATAAATATGTTCGACG 228062 37 100.0 36 ..................................... GTTGATCTCGGTTTCCAGTTCCTGGCGGCGCTCTTC 228135 37 100.0 36 ..................................... CCAATTGCTGTTTCTGAAACGTCCTCGTACTACTTT 228208 37 100.0 39 ..................................... CAAAGAATATCTCTGGGAATTATTACACGGGGTTTTCAG 228284 37 100.0 36 ..................................... TCGATTTTTGGATGATTAGAATGGAAGTTGGTCCTT 228357 37 100.0 38 ..................................... GAATGATTCCCAGCCGCCCTGGCACTCTCTCCAGGGCG 228432 37 100.0 36 ..................................... CCGCCTCGCCAAGATGATGTATGGCAACGGGCTGTA 228505 37 100.0 35 ..................................... TGCCACCGACGGCACAATCCCCGCAGGCCGCATAG 228577 37 100.0 36 ..................................... CAGGCTTGGGGCAACTGGTAGTATTTCCGGCACGAA 228650 37 100.0 36 ..................................... CTTCGTCCTGTTTCGATTCCGGCAATAGTGGCTTTG 228723 37 100.0 36 ..................................... GTACTGTCGGCGGGTGAAGAAATCCGCCAGTTCGTC 228796 37 100.0 37 ..................................... ATGATTTCCAAGAGGATGGCGTATTTCTGCGCCCATT 228870 37 100.0 36 ..................................... CACCAAGTTGACCGAACGGGGCGGAGCATAGGGCTC 228943 37 100.0 37 ..................................... ATCCCGTAGCGGCTACCAGGTGGCGCTGGAAGATGCT 229017 37 100.0 35 ..................................... CAAGGACAGCGACAAATGGTATGCCGAGGAAATGG 229089 37 100.0 37 ..................................... TCGGGCTTTTTCCGGCGGTCCGCGGATACCGAAATAT 229163 37 100.0 37 ..................................... CCGTAACGTCTCCGCCGCCTACAACCGACTGAACCGG 229237 37 100.0 36 ..................................... ATAGAAAAACCCCGCCCACGCAATTGCGGGCGGGGT 229310 37 100.0 35 ..................................... GTGCCTGGATCAGCTTCCGCATCACCAGCTCCTGC 229382 37 100.0 37 ..................................... TAGCCTTCCCTGGACGCTGCCAAACTTATCCCGAGCT 229456 37 100.0 36 ..................................... CTAGGCGACCTGATGGATCGCGTAGGCAGATTGCAC 229529 37 100.0 36 ..................................... ACGAGGCCAACGCCCACGACCTTCTAAACACGCTAA 229602 37 100.0 36 ..................................... CCGTGAACGCGTCCAACTCGGGGCCGGTCGCGCCAG 229675 37 100.0 38 ..................................... GTTCTTTGTCGAGTTTCTGTATGCGTGACAGCAATCCA 229750 37 100.0 37 ..................................... CGCGCCTATTGAGAATGCGTTGTCAACCGAATTAACT 229824 37 100.0 39 ..................................... GGAGGTGATGCTTTCAATTGCATCCTGATTGATGAACTC 229900 37 100.0 36 ..................................... GTGACAGGTTGGCACGGTTTTTTGGTTGGGGCGCGG 229973 37 100.0 37 ..................................... TACTCCCTGCGCGTCTTCGTGGCCTGGACATAGACCA 230047 37 100.0 36 ..................................... AGTCCATCCTCCGCGCCACAACTTTTCATTGCACCT 230120 37 100.0 35 ..................................... GTGTAAACGTGAAGGCGATCACCACGAAGCTAGCT 230192 37 100.0 36 ..................................... AAGCGGGCGGCACTGCCGTAGAGCATGGCGGCGTAG 230265 37 100.0 38 ..................................... TATTTCCAGGACGGTGTTGGCGGGAATGGTAGCAGAAT 230340 37 100.0 36 ..................................... ACGATAACAGCCAGTATGATGCCGTCTTTGGCTACA 230413 37 100.0 36 ..................................... ACCATCGCAGAGGTAAGGTATCGGGCACCAATGTTT 230486 37 100.0 38 ..................................... CAAACGACCCCACACCAACCAACGAACGCCGAACTCGT 230561 37 100.0 35 ..................................... CAAATCCTGTTCACGGCTACATCAAGTGCCACGCC 230633 37 100.0 38 ..................................... GCCAGATTCGCGTGAACACGACTACTGGACTATTTCGA 230708 37 100.0 36 ..................................... CCGTTTCTTCAATCCTTACTAGTCTTCTTACCCCTG 230781 37 100.0 38 ..................................... TCGTTCGGCGTGATTCGCTCCGCCTTGAAGCCTTTAGC 230856 37 100.0 36 ..................................... CGCAGCTGCAGTTCCTCCCACTGGGGGTTGTCTTCG 230929 37 100.0 36 ..................................... CAGCGCTCGATCAACCGGCAGACGTCGCGGTACAAA 231002 37 100.0 36 ..................................... TCGAGCGCTCCAACGGCCGAGTGGTCGCCTCCGGGG 231075 37 100.0 35 ..................................... CATCTTCTCCAGCTCACGCCGGAGTTGATAGGCGA 231147 37 100.0 35 ..................................... ACCATGACGGTAAAGGCAGTACTCTGGACTTACTA 231219 37 100.0 37 ..................................... ACCATTTCCACGGGGAGGTGATTGGTAGCCGGACTTT 231293 37 100.0 36 ..................................... CGCCCCGTAAGGTCGCGGAAATTGTGGGAAGTCAAG 231366 37 100.0 36 ..................................... TCGGGAATCGGTACAAACTTGGAGTTTGCAACGTTT 231439 37 100.0 36 ..................................... CAGGTGCTGGCCCGGATGCCTTCCCGGCCAGCTTTA 231512 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================= ================== 62 37 100.0 36 CTTCCAGACCGTCGAATGACGGGAGATGGATTGAAAC # Left flank : GATGGCCCCTTTGGATTATAAATTTGCCGAGTATAAAGACGTGGTCTACAGTACCTACCGAACGCAATTGTACTGTTATGCGTTGCTGGTTGAGGCCAACTTTGGGAAATCCGTGCAGCGGGGGTTCATTGTTTATACCCGGAGCAATAATAAAGTTATCGAGGTTCCCGTCACGCGGGATGCGCTTACGAGTGTACAGGCCACCGTTGCCGATATTGGACGGGTGGTTGGTGAAAATTTCTTTCCCAAAGCTACGCCGGTAAAGGAAAGATGCGTAAATTGTACCTATCGTAATGTCTGTGTCCGCTGATCCGGAGGCAAACTTATTTCCATGGTCAAAAAAAGCCTCGCTACAAAGTTGATTTACAGCCGATTGCCAATGCGGAGATGTAGCAAAATAAGCTTGTTTTGGCCGTTCTTTGACGTGCTTCATTGGCAAAAAGACAGTCGCTCGAAGCGGTTTAGTTTGTTTATTTTCAGTGCATTGTGTAGGTTTACGG # Right flank : TGTGGCCTGGGATGGAATCGAACCACCGTCGTAACCTCGAATAAGGAGAGATGGACGGAGAGGGGGAGAAAATCAACGGGGTCAGCCAGCCAAGCCCACTTTCCGCCAATTGAGAATAGCCAAACACCCTCTCCTCCCTCGCTCCCTTATCCTCTGCTGCGCACCTGCGTCCGCGCAAGATGCCCCCAACCGCCAGCGTAGTCCCGACGAGCGAAGTGGATCATCGCCTCCGCGCCCAAATAGCATAAGCCGCCAAAGTAACCCAACAAATAAGGAGCCCAAAAAACTCCCGCGTCAGCTCGATGTACGGCGATTCGGCCTGCATGGAGCCGGTGATGGTGGGCGTGCCGTCGCGGAGCCACTGCGTAAAGTCGGGCAAATACGCGCACCACCAGGCAAAAAGCGCCACGGCCGGCAACAGGGCCACCACAGGGCGCAGGCCGCCGGTAAACGCCCGCACGGCCACGAAGGCCACGATGCCGTAGGCCGCCACCCAGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAGACCGTCGAATGACGGGAGATGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : NA // Array 1 89154-80527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSIT010000118.1 Lewinella lacunae strain KCTC 42187 1434_142511_17515041_1288...800+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 89153 29 100.0 35 ............................. GCGGCAAGGAAGACCCCTACGGCTGGGCGGGCACC 89089 29 100.0 36 ............................. TCCGGGCCCGCGAGTGGCGGCGCGCGCCGCACATCG 89024 29 100.0 36 ............................. TAAAGGGCAAAGAGGGACACTGCGCTGCTGAGTTTT 88959 29 100.0 34 ............................. TGCCCATGCCATCGCAGTTACGGCACTTGGTCAG 88896 29 100.0 36 ............................. TCTATGCTGATCCGGGCGAAGACTGGAGCGGCGAAG 88831 29 100.0 36 ............................. TATTTGCCGCACTTGAGGACGCAGGAGACCAGGCCG 88766 29 100.0 36 ............................. TACCGGCGAAAGCTGGACGGGGCTGTGGGCGTGCCG 88701 29 100.0 35 ............................. CCAATCCACGGACTTCTTCAATGGCCGAGTCAACG 88637 29 100.0 35 ............................. CTACTTCGGCAAGTTCTGCAACCGCCTGCTTGGCG 88573 29 100.0 35 ............................. TGGAGATGTTCTACATCTACTCCACCTTCCCGCAG 88509 29 100.0 36 ............................. AACACATGAGCGTCAATACTGAGGCCCTCCAGTCAT 88444 29 100.0 35 ............................. TATAACGACATCGTCTTGGTCCAGCCCGCCCGGAA 88380 29 100.0 35 ............................. TGTAAAGATCTTTGGATGGATCGAAGAGATTTCAG 88316 29 100.0 36 ............................. TGTCGTGATGATTGACACGAAGAACGAGCATCACGA 88251 29 100.0 35 ............................. CCGCACCACCAATGGCAAGGATCGGCAGCGACACC 88187 29 100.0 36 ............................. CCTGGAATCGGGGACGGGCGATTATCAGACGTTGCT 88122 29 100.0 36 ............................. GACGTGCATTGCTACCGGGAGGAAACAGTAAACGGT 88057 29 100.0 35 ............................. TGCCCGCTTGGGTAGAGGATGACGAACTAGACATC 87993 29 100.0 35 ............................. GATGTCGTCGAAGAATTCCCCCCGCTTCTGCATAA 87929 29 100.0 36 ............................. ATGGCACGGTCGATGAATGACTTCTGGTAGAAAAGC 87864 29 100.0 36 ............................. GACGATCAGGGAGATGAGCGACAACAGGCCCACAAT 87799 29 100.0 36 ............................. CTACCATCGACGACCTGCTGAATACGAAGAAGCTGG 87734 29 100.0 36 ............................. TGCTGTTCGGAGTATCCGCCACCGACTACCACGCGA 87669 29 100.0 36 ............................. TTTGCCCGCGTAGTGATGGTACGATACTACGCGCAC 87604 29 100.0 36 ............................. ACGTGATCCTTGGCGTAGACGTGAGGAAGGTGATCC 87539 29 100.0 35 ............................. ATGAGTTGGGAGGAACAGGTGCAGGAAGATTTCGG 87475 29 100.0 36 ............................. AGGAATATGAATCGCTTGGTTTCGGTGATGGACATG 87410 29 100.0 36 ............................. AGGAATATGAATCGCTTGGTTTCGGTGATGGACATG 87345 29 100.0 36 ............................. ACGTGAACGGCAAGGTGGTGTCCTTCCACGAAAACC 87280 29 100.0 36 ............................. ACTACGCTGCTCCAGTCGCTATCTGGAGGCTCGACC 87215 29 100.0 37 ............................. TTAAACTTTTGCATCGTACACAATGGACTGCCCGGAG 87149 29 100.0 37 ............................. TGGCCTTTCTTTTTGGCCTTCCCCAGCGAGGGCCCCA 87083 29 100.0 36 ............................. TTCCGAACTTGATCAGTGCCACACCATGCCGTTTGG 87018 29 100.0 35 ............................. CTTACAGCGGAGTAGTGAAAACTGCAGCGGTTCGT 86954 29 100.0 36 ............................. CATAAATGATCACGAATCTCCAAGAAATTAAGGACG 86889 29 100.0 36 ............................. TGCTGGGGTTGTAGGAGGTGGAAGCGATTCCCCTAC 86824 29 100.0 35 ............................. ACCATGCCCCAGATTCGCTGGAAGCACGACGGCAT 86760 29 100.0 36 ............................. TTCAACTTGAATGACGGCACCGACGTGGGCTTGTTC 86695 29 100.0 36 ............................. ACGACCTCGAAAAGTACTTCGAGAGCTGGCGCGTAG 86630 29 100.0 35 ............................. GTGTCTTTCTTCCGGTCGAAGGAAATGCAGGTCAG 86566 29 100.0 35 ............................. TGAATCCGGAAGCAGTGACGATGGCCCCTTTGGGC 86502 29 100.0 36 ............................. TTCACGATCGTACCGGAGTACATCGTGCGGAGGGTT 86437 29 100.0 36 ............................. TTAACATTGATATTGATTTAACTGCCAAGGGGCGGC 86372 29 100.0 37 ............................. ATGCCAGCACGTTTAACACCGGGGATTTGCGCGGCGC 86306 29 100.0 36 ............................. CCTAAAAACGGTGCGGGGCTGGGGTGGTAGAGGCCC 86241 29 100.0 36 ............................. TCGGGTTTCCCGACCGGCTTTGCCTGCTGCCCGGCG 86176 29 100.0 35 ............................. TCGTGATACCACCCTTGGCAAGGGCAGGGATATTG 86112 29 100.0 36 ............................. TGGGCGATCTCGTGACTGATTACGTAAATATCCCAG 86047 29 100.0 34 ............................. GGTAGTGCTGCACGTTCTCTTTTGGGATGCGCAA 85984 29 100.0 34 ............................. ACACCGTCCGCAGCATGGACCTCACCGCTTTCCC 85921 29 100.0 36 ............................. AAGAATACTGCACCACCGTTTCAGATTGCGACCCGC 85856 29 100.0 36 ............................. CGCAATCAGGAAGCCCCCATCGAAGCTCTGCACAGG 85791 29 100.0 36 ............................. GTATTGACCAGCACTACGACAGGGTACGTTGTGGTC 85726 29 100.0 35 ............................. ATGAGGGTGATTTTGTTGATCATATTTAATCACTG 85662 29 100.0 36 ............................. GGGTTTCGTCTTCGGGGAGCTGGCCGAGGAGCCGCA 85597 29 100.0 36 ............................. GTGGTGGTGCCACCTGCCCCGCAAAATTGATCTGTG 85532 29 100.0 36 ............................. GTCGTAGGAAATGCAGGTCAGGGAAAAGGCCTTGCC 85467 29 100.0 36 ............................. CTTGAAGCTGATCTGGTTGGAGTACTCATCGAGGAA 85402 29 100.0 35 ............................. TCGGCGCTGGGTCGACCCCCGTCTTCGCCTTCGCT 85338 29 100.0 36 ............................. AAGGCGTGGGAGATATTCCCTAAGGTAACATGGCTG 85273 29 100.0 36 ............................. CAAGTCGTTGGGGTTCGCACGGTGATGTTTAAGCAT 85208 29 100.0 36 ............................. TCACGGGGTTGGGATAAGGGCTGGCCAGCGCTTCGT 85143 29 100.0 35 ............................. GGGATTTGCGCGGCGCGACTGGCCGGCGGGTGCGG 85079 29 100.0 36 ............................. TGGTGTCGGCCAATTCTTCCAGCCAAAAGCGGGTAT 85014 29 100.0 35 ............................. TCGCCAAGAGGAATGAGTACTTCGTCTCCTTTCTG 84950 29 100.0 36 ............................. ATGCGGGCTGCCCCAACATGTTCCATTCGCCGGGAG 84885 29 100.0 35 ............................. GCTTTCTTCGTGGTGGTTTTCTTGGTGGATTTTTT 84821 29 100.0 36 ............................. CTTTTTTCGTCCGGACCAGTCCTTTTCAGCCAGCAG 84756 29 100.0 36 ............................. ATGCATCTGTAGTTCATTCTCATCAGTAAAGCCAAA 84691 29 100.0 35 ............................. GCGGTGCGGGTAAGATTGATAAGGATGTAGCGTGA 84627 29 100.0 36 ............................. CTGGAGTAATTAACGGTACAAACTTCCGCCTCTACG 84562 29 100.0 35 ............................. TTCATTCGCGCTGTCATTAAGTCCGGCCTCCGGGC 84498 29 100.0 36 ............................. ATGATTTGCCCCCACCATGGAGTGTTGGGGGTGATA 84433 29 100.0 36 ............................. GAAATGCTGCCTGTTGCACCCAAGCGGTAAATTAGT 84368 29 100.0 36 ............................. CTGGAGTTGTGCGTTGAGAATGAGGAGCCGTTTACG 84303 29 100.0 35 ............................. TTTCGTGGTTGATGGTCATGTTGCGAAACTTCAGG 84239 29 100.0 36 ............................. ATGGTGTCCCCATCCTTGTACGTACACTGGTTAGGG 84174 29 100.0 35 ............................. CCTCGTTAAAGTAGCGGAGGAACTCGACTCTTCCA 84110 29 100.0 35 ............................. TTAAGTACGCCGCAAATATAATAGCGTGCAATCTT 84046 29 100.0 36 ............................. TAGGGAATATCTACGGAGGCCATAAATACAATCTAG 83981 29 100.0 35 ............................. CCGGAAACGCCGGAACAAGCCGCCCGACGTCGCGC 83917 29 100.0 35 ............................. TAAGGTCCTTTCTGCCTCGCTCAGAAAACTTACGA 83853 29 100.0 35 ............................. GTGATCGTTTCGACCTCCACGCGGTAATACCCCTC 83789 29 100.0 36 ............................. TGGTCAGGTGCGTGTTCATAATGCGGCCCAAGCGGT 83724 29 100.0 36 ............................. TGATGATCGCTTCGGCGGGGTATGTAGTCAGGCAGA 83659 29 100.0 36 ............................. TTCGTGTGGGGATCATAGTCAAGTCGCCTGCGCTGT 83594 29 100.0 35 ............................. AAGAAACGCGCCTTCGCGTCCGTCTCCTCGAAGGC 83530 29 100.0 35 ............................. CTGTCCATCTGGAAGATAATGTCCGAAACGTTGGG 83466 29 100.0 36 ............................. GAACCTTACCTCTGCTTCCGTCAGCTGGAACTCCCT 83401 29 100.0 36 ............................. CCACGTGAAATTTGGTAAGTGCGGGAGGTTTTGGCT 83336 29 100.0 36 ............................. GCGCGTGATGATGTCCGTCATCAATGGATCCAACAA 83271 29 100.0 34 ............................. CGAACGGGTGCCTGCTGATCGGGCTACCCTCGGG 83208 29 100.0 35 ............................. GCGAAGGTTTGCGAGAATACCGCCGCTGCGCCTTT 83144 29 100.0 34 ............................. CGAACGGGTGCCTGCTGATCGGGCTACCCTCGGG 83081 29 100.0 36 ............................. TCCGGGAGCAGACCGCAAAGGAGCGCAAGGCGGAGA 83016 29 100.0 36 ............................. GCGTCTTGGTCCAGGTCGAGCCAGACGAAGTAGACG 82951 29 100.0 36 ............................. CCTGATCGTCGAACCCCGTCTGGGCAACGGCTGGTA 82886 29 100.0 37 ............................. ACGGCCAAGGTACCCCCACCCCCACCCCCGCAACGCC 82820 29 100.0 35 ............................. TAAGGTCACTTGTGGCAAAACCAGTCCACCCAGTG 82756 29 100.0 37 ............................. TTATTTATCCCGACTTATACCCGGTACCCCCGAGTTT 82690 29 100.0 37 ............................. AACGCGACAAGCTCCGAGCCTACCTAGGCAAAAACGC 82624 29 100.0 38 ............................. TGCGCCACGGGATATTTAGCCGCTTTTTTGAAGCTCTA 82557 29 100.0 35 ............................. ACGCTGTTGATGGTGTTTTGAGTGGCCAGGCGCTC 82493 29 100.0 35 ............................. GCGTGAGCTGGAGAAGATGTAAACTCCCCTTTCTT 82429 29 100.0 37 ............................. CAAGTGGGGGGTGAATGTTGGCAAATGGCCCAACAAT 82363 29 100.0 36 ............................. GGAGCAACCGGACCGCAAGGCCCCGCCGGCCCCATC 82298 29 100.0 36 ............................. TAGCCAGTACCGTCCTGACCGTGGCAAATGCCTTTG 82233 29 100.0 36 ............................. TCTGGTAGGTGGAAAAGACCGGGGCGTAGGTGGTGT 82168 29 100.0 35 ............................. GTGAACGGCAGCCTTCACGCCTGAAATAAAGTCGC 82104 29 100.0 35 ............................. TAAGCGAACCACTACCCTTTTTCTCAGCGCAAAGG 82040 29 100.0 36 ............................. TGGCGGCAGAGAACTGGCTCGTACCAACCCGGCGGA 81975 29 100.0 36 ............................. GGGTTAGTATACATCTCGATCAGGCGCTCGATCAGG 81910 29 100.0 36 ............................. AATTTAAAATAGCAATGCCTCGCTATTACCGACAAA 81845 29 100.0 36 ............................. GCCATGTTTCCCTGCGGAATATCGCCTACACCTTCG 81780 29 100.0 36 ............................. AAAATAGACTGTATTGAATCCAGTACTATTTGGGTC 81715 29 100.0 36 ............................. TCCGGAGGCGTGTTGTACCAAACCCGGCCCGCCTGG 81650 29 100.0 36 ............................. GGATTTTGGACAGGTTGGCAATGAAGTCGTTAACGC 81585 29 100.0 35 ............................. CAGGTCTAAATCCAAATTTGGTGTACGGTGGCTCG 81521 29 100.0 34 ............................. GAGATTTTCACGCGCAGAGTCAGCAGAAACAGAG 81458 29 100.0 36 ............................. ATGATTTGCCCCCACCATGGAGTGTTGGGGGTGATA 81393 29 100.0 36 ............................. AGGTTTTCCAACCTCTCAACCCCGGCGACAATAACG 81328 29 100.0 33 ............................. TCTGGGTTGAGCGAGGAGCGGAAAAAGGACAAA 81266 29 100.0 36 ............................. ATGTTTCGGGCGGTATCGATCAGTGTGGCGCACCTG 81201 29 100.0 34 ............................. CAGCAAAGCACCAAAAGCGCCATCTATCCCTACA 81138 29 96.6 36 T............................ CCGAAATCCCAAGTGGCTTCAATGATCTGCTTGGGG 81073 29 100.0 35 ............................. TGAACTGCGCGGAAGTCGCCAGGGCCCCGCCAAGG 81009 29 100.0 36 ............................. TTGGCGAATATGGCTCAAAAACCATGCGTCCGCACT 80944 29 100.0 36 ............................. GAACCCAAAACACGTCATGTCCTTATGCAGCAGGAT 80879 29 100.0 36 ............................. CCGGAAAATTCCTTTCGGCATAACCGGGCGAAAGCC 80814 29 96.6 35 .G........................... GAGGGTACTTGTTTCGCCCCTTAGCGTATTTTTTG 80750 29 100.0 36 ............................. TCTGTTCCCGTTATCGCTCCGCAAATCTTTGCTGTG 80685 29 96.6 36 .............T............... GTGATCTGCACCAGCTGGATGCGTTGGTTCATGGAG 80620 29 100.0 36 ............................. GATAGGCCATGCAGCGCCCACTTCACTTTTTCGATT 80555 29 86.2 0 ....T..........A........A.C.. | ========== ====== ====== ====== ============================= ====================================== ================== 134 29 99.8 36 CTTTGAATTGATCCTTCGGGAATTGAAAC # Left flank : CGCAGGTGCAATATTTATTCTAACCAAGCAAGGAAATTATGTACGTTATCGCTGTTTACGATGTCGCCGCAGAGCGGACTGGAAAAATGCTCCGTCTCTGTCGCCAACATTTGCATTGGATCCAGAATTCTGTGTTTGAAGGGGAATTGACGGCCGTAGGTCTACGGGAATTAGAGATCGAAGCCGAGAAGATCATGGATTTGAGCTATGATAGCTTGATCATTTTCACCAACACCCACGTTCACCGGGTGGAGCGAAGGATCATTGGCAGGGAAAAGCAGGAAATTGACCAGTTCCTCTAGTCGTCGGTGAGGCTCCTGCGCTGCCCCTGATTGATTGAGTCAGGGAGCGACTAATTGCTAATTTGCTGATTATGAACAGCTTGTGTCAGTCGTCGATCTACCTGCCAAATCCCCTTACTGCCGACCGACGCAAAATACAGGCAAAATGTGGGGTAGGGGGCCTTTGTTTATGCGGGTTTAGGTGGTAAATTTGGTGCT # Right flank : TAAGAGTGCGGTACGCTCACCAGGTCGAACCAACCTATGTCAACTCCTCAAAAGTCAGGGATTTTAAACTGTCAACCTATATCAGGACGAGTCAACTCCGCCGAGTCACCCTACATCGCTCTCCCGTCCTCCCCAGCACCTGCGCCCGCGCCCCAATCCCCCCAAATCCCCCCTCCCCACCAAACATTTGCCCAGCGGGACGAATTTTAGCAATATGAAAAAGCTATGTTACCTCCTGCTGGCCGTGACCCTGGCCGCCTGCGCCCCCAAAGTGCCCACCGAACGCAAAAATGAACTCGCCGTACAATCGGCCGATACGGTAGAGACCGCCATCGGGCCGCTGGTGATCCCTTCGCCCTACACTACGCCTTCGGCGGTGAAGCAAAGTAAGGTGATCGACTGGCCCGCCGACCGCACGCCCCAGGCCCCCGCCGGCTTCCGCGTGGAGCGTTTTGCCGACGATTTGCAGCACCCCCGCTCGACCTACCAGGCCGAAAACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAATTGATCCTTCGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //