Array 1 25249-24801 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINAH010000051.1 Escherichia coli strain C14-3 c_000000000051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25248 28 100.0 32 ............................ AGAAGACGAATAACAATGGGGTTATTGCCAAT 25188 28 100.0 32 ............................ CGACGTTAAGTCGGGCGCTTAAGAGGATATCT 25128 28 100.0 32 ............................ ACATCAAAACAATCACTGCACAGTGATTACTC 25068 28 100.0 32 ............................ CCACAGACCAACAATAAGGTCGGCGAAATTAC 25008 28 100.0 32 ............................ ACCTCAATACTCAAACAGGGATCGTTTCGCAG 24948 28 96.4 33 .............T.............. AGAATGCTGGCACTTAATCCAACAGGAAATCTT 24887 28 96.4 32 .........T.................. GCTAACGCGGAGATACGCCCCGGCTGCGGGTG 24827 27 85.7 0 ......A....C........-...T... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AACTGAGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCATATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCACGCAGTTCATCCGACCAGGATTGTGACTGTATATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCCAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGAGATTTTGTAAGTTTTAACAGTAAATCAATAGGATAGTCTGCTATTATTCCA # Right flank : ATCCATACCCCAATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 35239-34429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINAH010000051.1 Escherichia coli strain C14-3 c_000000000051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35238 28 100.0 32 ............................ ATTGCCTGACGGGTAATCAAAATGCCGTGGAA 35178 28 100.0 32 ............................ ATCAAAAATCCGCACAACTACATTAAGTTTTG 35118 28 100.0 32 ............................ GGACACGCTGACCTGCTATCAGAACAATCCGA 35058 28 100.0 32 ............................ AGAGATGAAACAAAGCTGGTGGTCACAGATTC 34998 28 100.0 32 ............................ GAGAACAGCCAGATGCTATGGGATTCAGAAAT 34938 28 100.0 32 ............................ GGTAGCCGTACTCATTACGCAGCGGTTTTAAT 34878 28 100.0 32 ............................ GGCACGCGCTCCAGTTTGGTGGCTCTAATGAC 34818 28 100.0 32 ............................ ATTCATCATCGTATAAATCTTTCATAGCCACC 34758 28 100.0 32 ............................ AAGCGATTATGAGTCATGCGATAAATAGTTAC 34698 28 100.0 32 ............................ GCCCCGCCGGAGACGGGGCGGCAGCAAGGGAG 34638 28 100.0 32 ............................ AAGATAAGAGGCAAAGCGTTCAGTGGCATCAT 34578 28 100.0 33 ............................ ACCGAAACAGCCATGACCTGGCTTAAAGATCAT 34517 28 96.4 32 ...............A............ GCGAACGTCAAAAAGAACTGGTGGCAGCAGGC 34457 28 85.7 0 ...........A........T...C..T | C [34433] ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTATGACCGGGCAATGGGTGCACGTCCGATGGCACGCGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGACGGCGGCCAGGTCACCGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTCTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTACTGTAACTTATTGATAATTAATGCTGCTGGAAGGTAAGGATAAAAAAGGGTAGCAGCAGGGAAATTAGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAATGGTAGACGTTTGGTCATATCATGACGCTCTCAACTTCAAAACATTAGTCTTAGCACACAATAACAATTGTAATAATTGCGACAGAAATCAATTTCCTGCATAGAAATCAATGTTGTACTAATCCTAACGCCTTCAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGGGGGCGGGTGGAGTATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCTATTGCGAATACCACGGCATTAATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //