Array 1 2987-2043 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JYQD01000047.1 Salmonella enterica strain CVM 43760 43760_contig_47, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      2986	    29	 100.0	    32	.............................	GGCGTATCGATGATTGTGGCGTTCGTTAAGTT	
      2925	    29	 100.0	    32	.............................	ATTATTCATGATGTGGTGTTAAATCAGATTAG	
      2864	    29	 100.0	    32	.............................	TTACGTAATGGCGGCGGTTATTATGGTGTCCG	
      2803	    29	 100.0	    32	.............................	AACTTCCGCGTTAAACCGTTTTCCTATCAGAT	
      2742	    29	 100.0	    32	.............................	GTACATCCTTTTGTAATTCTGTTTATTCCTCC	
      2681	    29	 100.0	    32	.............................	GACTGGACGGTATCATCAGCCGATTTACCGGT	
      2620	    29	 100.0	    32	.............................	CAACAGTTAACGGCCTGATAGCCCGCTGGCAG	
      2559	    29	 100.0	    32	.............................	GTAAACTTGGTTTATGGGGTAAGGTAGTTGCA	
      2498	    29	 100.0	    32	.............................	CGTTCCTGGGTGGTTTTACCGTAGTCCCAGTT	
      2437	    29	 100.0	    32	.............................	ACAGTCACCTTTAATTAATTCGCCATGTGTAA	
      2376	    29	 100.0	    32	.............................	GGCAACGACATAGAAGCCTTTATAAAGTCCGT	
      2315	    29	  96.6	    32	............................C	AGTAACGTTTAATATTTAAATACATGGCTAGC	
      2254	    29	 100.0	    32	.............................	CCACGCAAATCAAAACTGGAACAGGCTAAAAA	
      2193	    29	 100.0	    32	.............................	GGCCGTTCATCCACGAGGTGTCAGGGGCGTTT	
      2132	    29	  96.6	    32	............T................	ATGTAAATATGCGTACGTGCATATAGCACCGG	
      2071	    29	  93.1	     0	........T...T................	|                               	
==========	======	======	======	=============================	================================	==================
        16	    29	  99.1	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CAGCGGGGATAAACCGGCACCTGGTCACTCTCACCCATACTGAACTC
# Right flank :  CTTTGTAAAAATCTTATGACGGTTTCAAATGGCATCCCTGTGCAAATGAGTCCCGTAAAAGTTACCGTGGAGCTGCTTGCTGATAACCTGCGACACAGCCTTCTGGGCCCGGCTTTTTTTACTGTTCCTCAGTTGCTGACGGAATATACCGGAAGCACGGTTTTTGCCGGGAAGTCACTGACGGTTGATGGTTGTCTCACAGCAGTCCGTCCGGGAAGTTCGCTGCAGTGTCTGGATAAATCAGCCTGAAGGGCCGGAGACAGAGTTATACAGCCTACATCCCAATAGTGTGACGACAGGACGTTTCCCCGGCAGTCATGCAGTCCCCTGCGGATTGTCCGTAGGGGGGGGGATTATCGTTACCTGGAGAACATGGACGAATCTGACCTTTATATACTGTCGGAGGATGAACTGGATTATTTTAACTCATCGGCAGACCACCGTCTGGCTGAGCTGACGATGAACCGTCTGTATGACAAAGTGCCGGCCAGCGTGTGGCA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [61.7-33.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.65   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//