Array 1 54840-56126 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH370363.1 Aggregatibacter aphrophilus F0387 supercont1.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 54840 32 96.9 36 A............................... AGAAAAAGTGGTTGCTGAATATTACCGCATTAAAGT 54908 32 100.0 31 ................................ AGTGCAACACAAGGTGGAAATGCTAATAAAA 54971 32 96.9 37 C............................... ATATAAGTTACTCTATTTTAGGTAACTTAAGGTTAAA 55040 32 96.9 32 C............................... ATATGCCGACCGAACCTTTAAAAGCCTTATTA 55104 32 100.0 33 ................................ CACATCCTACGTTAAAGGTGATTGAAACTAATG 55169 32 96.9 32 C............................... GGACCCGTGCACAAAGAGGCACTGCGCCTTGA 55233 32 96.9 35 A............................... CACAATTCCACATTGGAATATGTCAGTCTTGCAAG 55300 32 96.9 34 A............................... CACGGTGCCGTCAGTATCAATCACAAAGTGATAG 55366 32 100.0 33 ................................ CATTTTCACACTCTTTATAAATTATGACCGTTT 55431 32 100.0 34 ................................ CGTGGAGGTGTCACGCAATAAGCCGCGTTTCCAG 55497 32 100.0 34 ................................ CGTGCTGCTTTATGGTATGGAGACGCACGATAGC 55563 32 100.0 35 ................................ TGATTTATACCTAACTTAACACAAGCCCAATTAAT 55630 32 100.0 34 ................................ GAAAAATTAGGTTCAACGGCTGGACCTGCGTTTA 55696 32 100.0 35 ................................ GATATTCTTTGGAATGCGATCCAATGGAGATACCG 55763 32 100.0 35 ................................ CACGGTGCCGTCAGTATCAATCACAAAGTGATAGC 55830 32 100.0 35 ................................ ATCCGGGTTTTGTGCGTCAAAAGCGGTTGCCATTT 55897 32 100.0 34 ................................ TGCGGATTTTTAAGTACACATAGCCAATGACGGC 55963 32 100.0 34 ................................ TTGGTAGTAGATGGATAAGTTATCCAAGCGGGTA 56029 32 100.0 34 ................................ ATCTATGTAATCCTTATTTATTACATAGCCATTG 56095 32 84.4 0 ......A...T..G.A......A......... | ========== ====== ====== ====== ================================ ===================================== ================== 20 32 98.3 34 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : TTTGATGAGATAAACCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTACGCCGTATCGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCAGTATTTGAATGCGATGTCACGCCTGACCAATGGGTCATGTTGAAAAATAAACTGTTGGAAACCTACGACCCCACATGTGACAGCCTGCGTTTTTATCATTTAGGCAGTAAGTGGCGCAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTGGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACTCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGACAATGTGGCCGTTATACTTACCAAACTCCTTATCATAAAATCAGTTAGCGAAATACGGTGTTTAATACGCTGATTTTTCTTGCTTTTTTAGGTAGGG # Right flank : CAAGATGTCGAGCAAGTCGCGCTCATTTTGTGCGGTGGCAACCACCTTCGGGTGAGTATATATTTTGTCTTTACGAAAAATAAGTGATCTATAAGTTTCAAGCCTTTCTACAAAAACGTCTGGAAAATCCACCGCACTTTTCTTTCATAAAAATAAAAAGCTGAACCTCTTTCGAGATTCAGCTTTTCTTTTGGGGTTAGATCATTTTAACTGCCCTTTTTGTTTATCTATGCTGAAATATTGTTACATTTTCGGAATTTCAACGCCTGAAGAGAGCAGGTCTTGAATATCCGATTTCAGTACATCAGCTTTTGGCCCATAAATGGCTTGAATGCCAGTGCCTTTGACGATAAAACCCATTGCGCCTGCTTGTTTCCAAGAGGCTGCATCACCTACCAACTGAGGGTTGTGAACGGTGATACGTAAACGGGTCATACAAGCATCCACCTCGGCAATATTGTTGCGTCCACCGAGAAGATTGATGATTTGCACCACTTGTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 100652-100495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH370361.1 Aggregatibacter aphrophilus F0387 supercont1.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================ ================== 100651 23 100.0 44 ....................... GTTATCGACTGGGTTAATATGTTTGCCTTAGCGGTCTGAACTTC 100584 23 100.0 44 ....................... ATGTGATGGCGTTCGGTGATCAATTAAACGATTTGGAACTTCCT 100517 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ============================================ ================== 3 23 100.0 44 CGCGCGCGCGTACTGGTCGCAAA # Left flank : AGCAAAATTAGCGGGTTATGTTTTGCTATGGTGCATTTCATTAAATACTTATCCTTTCAGTTTTAAAAAGGTGATGTTTTAGTAGCGGATCTTTTTAATCTCGCCATTCCCTTAAATAGCCCTTTCATTCCTCGCGGAATCGCAAAAGGGTGCGGAGGCGGTTCAGGCGGTTGATAAGGCTCACCGCTTAATAAATCCGCCCGCCATGTTCTCAAGCGGTAATGTGGCAAGGTTTCCCCACGCTGTTGCATTTCTGCCTTTTCCTGCTCAATTTGTTCCGCTACTCGATAATGGTTCAGTAACTCGCTGGCTTTTGCCCGTAGTGTGTGCGGTTTCATTCTGCCGGCACGCCCTTCCCCTAATACCATTCGCAAAGCGTGCGTTGCATTGCCCATTCGGGCGTAGGTTTTCGCAAATTGGTTTCGTATTTCGCGGCCATATCCCATCGTTTTAAATTCCCCTTAATTGCTTTTGTGCAATATGCACCTATCCTGAACTTC # Right flank : ACTCTCTTTAGTCCACCACCGGCAAATCGACCGATTCGCTTTTGTTTTCTTGATTGCTAATTAGCATTTCAAGCTGTCCTTTCAGTAGGTCTATTTCCATCAGGGCATAAGTGGCTTGGTCGCAAATAAACTCTAAAGCGTCTTTATGCGTGAACGGAATTTGTACCTTTTGCCCGGTCTCATCAATTCGGGTTTGCGTTATTTTTCCATCAAGTGATAAATCAGCCATTTCATACATACGCTCAATAATTGCGTAAATGCTCCATAGCGTCACCGTGTTGCATTTTTGATGGTGGGGTAATGGTTTTGTATTGGTCATTCTTTTCAATCGCTCCTTGCTCGTCTAATTCAATATTTTTCCCATTTCTACAAACTGGAACTTCTCGCCCTGTGAGTACTTTTCTTCAAGGTGTCGCATGGTTTCTTGTTTGGTATCAGTGGAAAGGATTTCAGCAAGTGGAATGAGTGCGCCATTTCCTTTTTTCATCGGATTAAATGCC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCGCGCGTACTGGTCGCAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //