Array 1 88723-89850 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJHO01000009.1 Escherichia coli strain HEB2 NODE_9_length_111309_cov_95.4913, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88723 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 88784 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 88845 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 88906 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 88967 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 89028 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 89089 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 89150 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 89211 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 89272 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 89333 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 89395 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 89456 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 89517 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 89578 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 89639 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 89700 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 89761 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 89822 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 95063-94729 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJHO01000015.1 Escherichia coli strain HEB2 NODE_15_length_95270_cov_97.3848, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95062 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 95001 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 94940 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 94879 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 94818 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 94757 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAG # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAATCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //