Array 1 1348-780 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXUN01000140.1 Pseudomonas aeruginosa strain MRSN25678 MRSN25678_contig00140, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1347 28 100.0 32 ............................ ACCGCCACCAGTGCCTTGGCACTTGTTGGGGT 1287 28 100.0 32 ............................ ATGCGTGCCGCGGCTGAAATCATTGCGCGAGG 1227 28 100.0 32 ............................ TGAACGGTTTGAAGTTTCAACGGCATGCCGTC 1167 28 100.0 32 ............................ AGATTCGCACTCGGGAGGCGGAGGCTTGCACA 1107 28 100.0 32 ............................ AGTAGGTCGCGTTCGGCGGCGAGGCGTTGAGC 1047 28 100.0 32 ............................ AAGCTGGCGCCGATGACGGCTACTGCCGCCAC 987 28 100.0 32 ............................ ACCGTCATGCTCTGGCGCATCGATGCCGGCGA 927 28 100.0 32 ............................ TTGTCTTCGGATGCGAAGTGGGCATTCGTCAC 867 28 100.0 32 ............................ AGTCAAATACAGCCTGTAAGAGAACCCCCATT 807 28 78.6 0 .C..........A....TG..C.G.... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACCGCTTCCCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAGAGCGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCTTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCCGTCCCAAGCGCGACGCCCCCGGCCTGGCCAGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTTGCGCGTAAACGGCGAGGCTCACCGCCCGTCCCGCCCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGCTTCTTACGCCCTTTAAAATCAATAACTTACCAAGACACGAAAAAAGAGGGTTGCAGACCAGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : GCCGGCTGCGTATCCCAGTGATGATGGGGGTTCCAGAGTCCACACACTGGAAGTTCCGCCTCGCCGACTTCATTGATTGCGCCCCACCGTGCCGATGATTTTGCCCCCGGCAGCGGCAAGGAGCGGCTACTCCGCTCGCCCCATCATCAATGAAAGTTAAAGAATCGTGCGGTCTCGTATCTACGACAGCAGTAGTCGAAGTGCACAGGAAGTTGCGCCTTTCATCTCCATTACTTTCGCGCGAGATATATCGCGCATGAACGAATGCAAGGATTCGCACATGAGTGGAAAACCCGCCGCCCGCGCCACCGATCCCACGGCCTGCTCTCTGCCGGGTCACGACACCAGCCCCATCGTTCAAGGCTCTCCCGATGTCATTTTCGATGGCCTGCCCGCCGCACGACAAGGCGACGCCTCGGCATGCGGAAGCCCGATCGCCTCGGCCGTTTCATCGACGGTCTTCATCAACGGCCAGCCCGCCGCCACCCTGGGCAGTGTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 52-499 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXUN01000185.1 Pseudomonas aeruginosa strain MRSN25678 MRSN25678_contig00185, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52 28 100.0 32 ............................ AGGGCGGCGCCCTGGCGGAGTGCTGCTACGCA 112 28 100.0 32 ............................ TTGTTGGCAGAACGTACCGCCATGATCGCCCG 172 28 100.0 32 ............................ CTGGAACAAGGCGAGTTGTTCCAGGGAGGATT 232 28 100.0 32 ............................ TTGGCGAGTTCGCAGCGCTGTTCGTTGTGCTG 292 28 100.0 32 ............................ TACGGCTTCGCGCCGCCGGTCGGCAAGGGTGA 352 28 100.0 32 ............................ AGAAGTTCTCCGACAAATATTCCAAGGTGGTC 412 28 100.0 32 ............................ TCGGGCGACGTGCCCGAATCCGGGCTCGATGT 472 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGTGTAGGCAGCTAAGAAACGGGACGAGCCCAGAACCACATTCGGGCACATG # Right flank : GTTGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTTTCCCCGGCAACTCCGCACACCTGTCAGCCATGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGGGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGACTCGTCGCCATCGCAACGCTCCGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCGGCTGAGGTCGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 190-457 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXUN01000245.1 Pseudomonas aeruginosa strain MRSN25678 MRSN25678_contig00249, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 190 28 100.0 32 ............................ TGCAGCGATGATCCGTTGTTCGCCTTCGAGAA 250 28 100.0 32 ............................ TTGAGAGCGGTTTGCTCGGCGGCGGTCGCCTC 310 28 100.0 32 ............................ TGCAGAACCTTCGCGGCAACCAACTGAGGTCC 370 28 100.0 32 ............................ TGGTTGAGCCAACATGCTCCCGTGCTGTACGC 430 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGCTCACCGCCCGTTCCGCCCATCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGGCGGCTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTAG # Right flank : TACACCGTGCGCATG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 169133-168445 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXUN01000069.1 Pseudomonas aeruginosa strain MRSN25678 MRSN25678_contig00069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 169132 28 100.0 32 ............................ TGGCCCAGTCGGTGAAATCACTTCCAGGACCT 169072 28 100.0 32 ............................ CAGAGCGCGGCGGCGAAGAGGAAGCGCGCCGG 169012 28 100.0 32 ............................ TTCCAAGTCAGATGTTGCGGGTTCAAGTCCCG 168952 28 100.0 32 ............................ AGGAGCAAAACGGTCAGCGAACAGGCAGACCA 168892 28 100.0 32 ............................ TCCCAGAACTCCCCCTTGCGGAACGGGTATCC 168832 28 100.0 32 ............................ ACTGGGAAGCTGAATCCAGGGCGCTCCAGAAA 168772 28 100.0 32 ............................ TCGAACACCTCTTTACCGTGCGTGGCCATGGT 168712 28 100.0 32 ............................ AATACAGAGCAGAATTTCGGTCCACTGCTCAC 168652 28 100.0 32 ............................ AGAACCGAATAGCCATGAGGCTGGCCAGAGGA 168592 28 100.0 32 ............................ ATTCCAGGCGGACCCAGACTTCATCCGGTTGC 168532 28 96.4 32 ...........C................ GAGTGTTACGGCGAGCGCCGCACTTTCACCAG 168472 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGGGACAGGTCACATCGGCCACCGCTTCACCA # Right flank : TCGCGAGCGATAGCGATATAGCGCCATAGGGCTTCGGCCTGCGGAGGTCTGGCAGGCACGAAGTCATGCTCACCTGTCCCTTGGGGTAATGGTAATGCCCGTCAGTCAAGAAAAAACGGCGTGTCCCCAAGCAAGGGACGCGCCGTTTTTCCGGGGCCTTTTGTGCTGGCCTACAGCCCGTTCTTCGCCTTGAACTCACGGCGGCGGCGATGCAGGACCGGCTCGGTATAGCCGTTCGGCTGCCGGGTGCCTTCCACCACCAGCTCCAGGGCGGCCTGGAACGCGACGTTGTCGTCGAAGTTCGGCGCCATCGGCCGGTAGGACGGGTCGCTGGCGTTCTGCCGGTCGACCACCACGGCCATGCGCTTGAGGCTCTCGACCACCTGCTCCTGGCTGATCACGCCGTGGCGCAGCCAGTTGGCCAGCAGTTGGCTGGAGATGCGCAGGGTGGCGCGGTCTTCCATCAGACCGACGTCGTTGATGTCCGGCACCTTGGAGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 190-818 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXUN01000097.1 Pseudomonas aeruginosa strain MRSN25678 MRSN25678_contig00097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 190 28 100.0 32 ............................ GAACTCATCAAGTAACCCAGCCGGGCGCCACT 250 28 100.0 32 ............................ AGACCGTGACCAGCGCCAAGCGGTCCTTGGTG 310 28 100.0 32 ............................ CTGGTTTCGGACGTTCCCAACTGCTGGGTCGA 370 28 100.0 32 ............................ TGCAGGAGGAAGGGCGCTTGCGCGCCGATTCA 430 28 100.0 32 ............................ AGTCACATGTTCGGGTACCAGCAAGAGCTGTT 490 28 100.0 32 ............................ TGATGCAGATGCATGAGCGCTTCCAAGAACGC 550 28 100.0 32 ............................ TCTTGAGCAGGAGCATTGCGGTTGGAAGAAGT 610 28 100.0 32 ............................ TCCGGCCCCACTCGGTCCGGACTGTGCAGCGC 670 28 100.0 32 ............................ ATCCGGCCCGCTCACCGACGGCGGCGCGTCCT 730 28 96.4 32 ............G............... ACGGTCCCTTGCTCGCGCCGACCAAGCGCCCC 790 28 82.1 0 ......................G.CTTC | C [810] ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TGAGGCTCACCGCCCGTCCCGCTCATCACGAAATAGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTAG # Right flank : CCACTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGAAGACAATACCGTTCACACCCGGCTTTCCCCTGACGAAACGAATAGCCTGTCCGTCTCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGTATGAGTGGGATGGACCTCAAGCGCCGTCGCGTCGTGCAAGGCCTGGGCGCTGGACTGCTGTTGCCGGCGCTGGGCGCGCCGGCGCTGATCGCCTCGCCCAGGGCGCGGCCGAAGCTGACCGATGGCGTGCAATCCGGCGACGTGCAGGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGCCCGGCGCGGATGATCGTCGAATGGGACACCCGTAGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGGTCACCGACGAGCGCCTCGACTACACCGCGCGCATCGACCTGCGTGGCTTGCCTGCCGACCAGTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //