Array 1 34809-35997 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRI01000053.1 Lactobacillus crispatus strain UMNLC19 SNF2W1B2M1S2816, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34809 29 100.0 32 ............................. AAAAATACCTAATTCGCTGGCAATTTGCGTGA 34870 29 96.6 32 ............................C AAAAAGACTGGTCGAATTGAGCCGTCTAAAAA 34931 29 96.6 32 ............................C AATAGCTATCTTTTTATCAGAGTTAAGATCTA 34992 29 100.0 33 ............................. CACCTTTCATTTGTTCTGCAGTTACTTGAATTG 35054 29 96.6 32 ............................C GGTCGAATTCGTGGCATGACTGATGAACTTGA 35115 29 100.0 32 ............................. AGTGACTTGCCATTTGATTAAAAGAAAGAGTG 35176 29 100.0 32 ............................. TAGGTGCCGCACTACTTATGGTTGGTGGTGCT 35237 29 100.0 32 ............................. AATTCATTTTGTGCCTGCTTTCTATCGGCAAA 35298 29 100.0 32 ............................. AATCTGTTGAAGAATAGCAATGCTTTATTTGA 35359 29 100.0 32 ............................. AATATTTTACAAAGATGGGGTTCTGATTGGTG 35420 29 96.6 32 ............................C TAGTACTGCTTTTATAAATAGAAAACTGAATG 35481 29 100.0 32 ............................. AAAAATGTGATTCTTGCTACAGGATCAGCGTG 35542 29 100.0 33 ............................. CACGATTAACAAGGCTATGGGCGATGGTGGGGT 35604 29 100.0 32 ............................. AGTCGTTTGATCAGTAACACCGTCACTGTTGA 35665 29 100.0 32 ............................. ATTGAAGAAACACAAATTGCAGATAAAGCAGA 35726 29 100.0 32 ............................. GCGCCTAAGTTTTGACCACGAAATACGTTGTT 35787 29 96.6 32 ............................C TCATGAGTTTCACCATATCGATTAATTAAGCG 35848 29 100.0 32 ............................. GTTGGTGCATTAATGGAAGATGCATATTTAGA 35909 29 96.6 32 ............................C AAGGCTGTCAATATCACCGTTCCAACGTGGCT 35970 28 86.2 0 ..............C.......-C...T. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.3 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AAAGCACTATTGAGTGATAAGAAGTTTGATCAAGCTGTTTTTTATCTGATGGATAATTTGAATTTATTAAAACAATCATTAAGCGCTGATATGGATTATAGTCAATTATTTGAAAAACTGCGAAAGTTAAATAAAAAATTAAAGGTATTTCTAAGCCTTTTCATTATATGCCTAAAAAAACACGTACTATCAATCAGGGAAGGAGAGCAATTAATGCCATAATTAGCAATATTATTGGTGCTGATTGTAAAAAATTACAAAATTTGCAAGATGAACAAATCTTTCAGATGTATCTTGAAGCTAAGCTGCTAAATCAAAATTGGATGAAGCTTAACGATGATCGGGGAGTTAGTCAACGAATCAGAAAAAGAGAATCTTATTTTATTCAATTAACTTTGAATATCTAATTACATAAATTTTGAAAAGTGAGTCTTCTTAAAAGTGATTGAAAATGTTATGATTTGAATTAAGGATCATTGATATAGCGGGATTTGTTTAGT # Right flank : TACTCTTGTATCAAGGGATTTCTCTAAAAATAAAAAAATAGATAATCGATTAACTTAATCATTCTAAAAATCGTGCTTGATCTAACTTCCAAACATCGTTATACTAAAGAAAGTGTTGCATCGAGAATCCTTATTCACGATGCCCGATCAACAGAAATTTTAGCAAACCTCTTAAAGGCGACTCGCTTTTAGGAGGTTTTGTTTTTTTATTGCCAAACAAAAAAGATGACAAAAATGCTGTAATCATTCACAATAGGGAACAACAAATTGTTGAATTAGAGGATTTAATTATGAAAACAGTAAAGAATATTATTATCGGCTTTGGTAAAGGCGGCAAAACGCTAGCTAAATTTTTAGCGAAAAAGGGCGAAGAAGTCCTAGTCATTGAAAAATCTAATCAAATGTATGGTGGTACTTGCATTAATATTGCTTGTCTGCCATCTAAACGCTTAATTATCGAAGCGGGTAATGGCGTGGATTTCGTAGATGCAGTTAATGGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66043-65648 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRI01000053.1 Lactobacillus crispatus strain UMNLC19 SNF2W1B2M1S2816, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 66042 28 75.0 32 TAT.T.........TGT........... GATGATGGACAGCCGCGGGGTACCCCGTCGGA G [66036] 65981 28 89.3 33 ..............TGT........... TTGTCTGATTCGATCACTACAGCAGAGCTGTCA 65920 28 89.3 33 ..............TGT........... ATGCTCTTAAGGACATGTCGAAGGAAGAAATTG 65859 28 100.0 33 ............................ CGATATTTGGAGTTCCCTCCTTAATTATTTTAA 65798 28 100.0 34 ............................ TTGCATGGTCTTAACGGCTTGGTCAACCTTGTCA 65736 28 100.0 33 ............................ GATTTTGATCGTCAAAAAATGGTACCTAAACTG 65675 28 89.3 0 ....G.........TA............ | ========== ====== ====== ====== ============================ ================================== ================== 7 28 91.8 33 GGATCACCTCCACACTCGTGGAGAATAC # Left flank : CTTGAAGTAAACTTTGATTTGTGGTTTTTTATTTTGCACTTTGCAATTGGGCTTTCGGCATATTTGTCACCTCTTAGCTCCGATTCTCTTAGCCTCCTTTCACTATATACAACACACGCTTTTACGTGTAACGCGAATGATATTTAGAAAAATATGCCAAAAAGGCATCAATCTGGCCGTCTAAAGCCAAATGATGCTTTAATTGTTTTTTCACCAAAATCAATAGCCTAACTTAATGACACTGTTTTTACATAAACTTATTAAATTTATAATTCTTCATATTTTTTGCTCTTTAACTAATTTGTTATCAAAATTGAATACAACGATTAGTAGCTAAGTCCTTCTTACGATTACCAGATTACCAATTCATCTCGATTCTATTTTAGATTTCTTAGCATCTTTTCACTATATAAGTGAACGCAATCTCCGTGCACCATCAACAATATTTTTAAATAATATACAAAAACAGTCACTCTATAGAACATATTTTTCAGAGCAGC # Right flank : TAAATGATCCACAATATATCAGCATCGCTCAATCGAAATAATATCATTTTTAATCACTTTTAACAAAGACCAATAATAAAGCCATAATTACAAAAAGCCACTCCAAATAAAAAAGAAGCATTTCTGCTTCTTTTTGAATAGTTTTGCTCCCAAAGTGCCCCTAGGATTCAAATTTCATTTATAAATCCTTATATATCAAGGTTTAAGGGCTATCCATTAAACGATTTCTTGCTCCTTGAAGCGGCCATATACTTTTTCAACTTCACTAACACTCATGAAAGCATACGGATCTGCTCCTTGCACGATTTGGCGAATATCATACATATCATATCGATCAATAATGGTAATCAAAACTGTCTTTTCAATATGACTATATGCACCTTCAGCATCGTGCAAAATAGTGATTCCACGATGCATTCGATTCTGAATTCCATCGATAATATGCTGTGGGTGCTGAGTAACAATCATTACTTGCATCTTCTGGTGTTGGGTGTAAACCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCTCCACACTCGTGGAGAATAC # Alternate repeat : GGATCACCTCCACATGTGTGGAGAATAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 3 68769-70447 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRI01000053.1 Lactobacillus crispatus strain UMNLC19 SNF2W1B2M1S2816, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 68769 29 96.6 32 ............................C ATACGGGATTCCTCTTTTCCATTTATCTTTAG 68830 29 96.6 32 ............................G TAAAACCACGTGCGCCAGATAAGCCAGCTATT 68891 29 96.6 32 ............................C TAGACGTTTCTTGCATAGATCTAAAAAATCGT 68952 29 100.0 32 ............................. TAACAGGTGGTGCGTCTTATTTTTGGAAAGAA 69013 29 100.0 32 ............................. AAAATAGACGTTAACCTAGTCCCAAACATTTG 69074 29 100.0 32 ............................. AAGACAGTTATCACAAAAGCATCTTCTTATTA 69135 29 100.0 32 ............................. ATTTTGGGATTTAGCTTTACATTTTCCATATA 69196 29 100.0 32 ............................. CTTCGCCAGCATAAACGTTTAATCCTAGTCCG 69257 29 96.6 32 ............................C ATAGCGCCTTACTCGACCAGTATTGGTCAAAG 69318 29 100.0 33 ............................. CACTCATTTTTTGTTGTTGATAAATCATGAGTA 69380 29 96.6 32 ............................C TTTCTGAGTTCCACAGTGTCGTAATTATCATA 69441 29 100.0 32 ............................. GTCCTAAGCCGTTTGCTCTGGTGTCTTCTGCA 69502 29 96.6 32 ............................C ATCTGGGTCGATTCAATCGGCTTAGTAGCAGG 69563 29 100.0 32 ............................. GTTGGTGCTGTTCGTGCTGGTAAAACTTACAT 69624 29 100.0 32 ............................. ATCCGTCATGACAAGCTTATGGAAGAAATAGT 69685 29 96.6 32 ............................C ACGCCAAAGCAACAAGAGCAACCAACGCAACA 69746 29 100.0 32 ............................. TTGGGTGCTATTAATGTAAACCCAGAAAATAG 69807 29 96.6 32 ............................C ATAACGCCTTACTCGACCAGTATTGGTCAAAG 69868 29 96.6 32 ............................C CACTTTGACCTTTAGAAAGCCCTGCGGCTAAC 69929 29 96.6 32 ............................C ATACATTGCGTTGGCTCTATGAATGTCTCCAA 69990 29 96.6 32 ............................C CACAACCAGTCCAACCAGAAACTAAAAAATTT 70051 29 100.0 32 ............................. CAGCACTTAGTAGTATTATCTGACTTTGCAAG 70112 29 100.0 32 ............................. GTCCCAGCACTTAATTTTAATCAAACACTTAC 70173 29 100.0 32 ............................. ATTTATTTATGGGATTAATTTAAAGAATTGTT 70234 29 100.0 33 ............................. ATCTTTCTTTTGTTTTTTAGTTACGTGTGTGTA 70296 29 93.1 32 ...........AC................ TGTTGCCAAGCAAACGTCAGCAGATTTTCAAT 70357 29 89.7 32 ...........AC...............C AATCTAGTTTATGATACAATAAACACAGATAT 70418 29 82.8 0 ...........AC....T......T.A.. | A [70439] ========== ====== ====== ====== ============================= ================================= ================== 28 29 97.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TGATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTGTCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGATTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGTAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTGTAAACGCCGGTATGCCAGTATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATTAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTAAACATTGGGAAC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 93156-94041 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRI01000053.1 Lactobacillus crispatus strain UMNLC19 SNF2W1B2M1S2816, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 93156 29 96.6 32 ............................C AAACGTTTGATTGTTCGGATTTTTTGGGAAAT 93217 29 100.0 33 ............................. TACAGATGACTATGATTTGCTCAAAGCCGGTGG 93279 29 100.0 32 ............................. CAGCAAGATCACCAGAAATATGTCTAAGTTCA 93340 29 100.0 32 ............................. ACGATGGGGACATTATCATTTATAAATTAACA 93401 29 100.0 32 ............................. ACAGCGATGAAAAAGCCGAGAACGTGATTCTG 93462 29 100.0 32 ............................. TAATGTTTATTGGACATTACATTAATAATTGT 93523 29 100.0 33 ............................. AACTACTATTTTGCGTTTGATAACCCGAAGTTA 93585 29 96.6 33 ..T.......................... ATAACCACAAGTCGTGCATCTGCAGTAGGGATG 93647 29 100.0 32 ............................. GGTTACGTGCTTAACGATGGCACTGTAATTAC 93708 29 96.6 32 ............................C CCTTGAACTTGTTTCCATTGTTCAAAAGTATA 93769 29 100.0 32 ............................. GATCTAAGCATTTTTCTAATTTCTTAACAATA 93830 29 96.6 32 ............................C CATCACAAAACATAGTGAAGCAGTTACACCCA 93891 29 96.6 32 .............A............... GTTTCCACATACCTTGCATTCAGCTGATTTAA 93952 29 96.6 32 .............A............... ATCTCTAGTAGCTCCTACAAAAACATCAATAT 94013 29 86.2 0 .............A.........AT.G.. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.7 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGGATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGCACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //