Array 1 9657-7227 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSIU01000007.1 Vibrio cholerae strain N2705 NODE_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9656 28 100.0 32 ............................ TCGCTTCCTTGCTCATAGCGGCTTTGATTCGG 9596 28 100.0 32 ............................ AGCCACTTGTCTAGTCATGTCACCGTACATAA 9536 28 100.0 32 ............................ ATCGGTGGCGTTTTTCGGCGATCAGATTGCAA 9476 28 100.0 32 ............................ TAGCACCACTTTCACCGGTGCATCGGCCACCG 9416 28 100.0 32 ............................ TTTCGCGGCCTCTATCGAGTGTACACCTCCGG 9356 28 100.0 32 ............................ AAAACAACTAGCCAACTGGCGTTTGATTTGTG 9296 28 100.0 32 ............................ TTCAACGCCATCTATCTGCGTGATAAAAACGT 9236 28 100.0 32 ............................ GTTAAGTCGCGCCGCTTCTGTGATTTGAGCTG 9176 28 100.0 32 ............................ GCGCTTGCAAAAAAAATGGGCATTACACGCCA 9116 28 100.0 32 ............................ CATGCAAGTGACGGATTCATCAATGCAGATGA 9056 28 100.0 32 ............................ TCTATCATCAATTTCGGACGGTAAAAGCTTAG 8996 28 100.0 32 ............................ GGTGTAAAAACCGTATGCAAAGGCCATAAAAT 8936 28 100.0 32 ............................ AAGAAGCTTTACGCAGAAGGCGTGTAGTCCAA 8876 28 100.0 32 ............................ ATTGAGTATTTCCGCTGGGGTGCAATCTTCGG 8816 28 100.0 32 ............................ ATCATCGACAATCCCTGCTTAATGCTTGCTTT 8756 28 100.0 32 ............................ CGGTTCGGACAGCATTCTTGATAAGTAGGAAG 8696 28 100.0 32 ............................ TCTTTGGCAGTCTCGACCTTTGCAGCAAATGA 8636 28 100.0 33 ............................ CGTAACCGCGCTCTGATGAGCTGCCTTTTTTGT 8575 28 100.0 32 ............................ AACAAAATGAATACTGCCGCAAACTGAGCAAA 8515 28 100.0 32 ............................ AATCTCGTCCGCCAACTGGCAAACGGTTAAAT 8455 28 100.0 32 ............................ ACTTGGCTTTTACTTTCGCCTATTCAGATTTT 8395 28 100.0 32 ............................ AATTCCGACAAGGCCGCACTCAACTTGTCCGG 8335 28 100.0 32 ............................ ACGGGGTCAAGGTCCCTCAATGGTTCCTCATA 8275 28 100.0 32 ............................ AAATGGGAAAAGCTCGGAACGTGGCCGCAATT 8215 28 100.0 32 ............................ TTACTGAGCCTGAGATTTAGTTACAAATCATT 8155 28 100.0 32 ............................ CGCAAGTTTGAGATGGTCGGGCAGCTGATCAC 8095 28 100.0 32 ............................ AAGGGGTCAAGGTCCCTCAATGGTTCCTCATA 8035 28 100.0 32 ............................ AACCAGTGCCCACTTGCTAAGCTCAGAGATGT 7975 28 100.0 32 ............................ AACCTTGAGTCTTATCAAGCCTCTTGTTTCCA 7915 28 100.0 32 ............................ TCGAAGGCATCCTCAGTAACGGGTACGCCCGA 7855 28 100.0 32 ............................ CGTCCAGTCCAATCACCCGCCCGCTTGGGAGT 7795 28 100.0 33 ............................ TCAAATGGATTTCCCAAGAAAAGTCTTGCGTTT 7734 28 100.0 32 ............................ ATCGAAGAGGCTGAGGGTGAATTTAAGTCAGT 7674 28 100.0 32 ............................ AATTGAATCTAACCTTGGTGAAATCAACTCTA 7614 28 100.0 32 ............................ ATCGAGTGCGCTTCTGCTGTGCTTTTTACTAG 7554 28 100.0 32 ............................ GTATTACTATACGGGGTGAGTGACTCGCGTCA 7494 28 100.0 32 ............................ ATTACAAGTGTAAGCAGCATCAATATGCTCTT 7434 28 100.0 32 ............................ TGACGAAGCGCACGCAATGATCGCCATAATGT 7374 28 100.0 32 ............................ GTAACAGGCAAGTTAGTGTTGGCGTTAATCTT 7314 28 100.0 32 ............................ AGTTTTTCAGATTAATTGGCATAGCTACTCCT 7254 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 41 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTCAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCAGAAAAATCCGGCAAACCGCTGGTGGAATGTCTAGCGGATTTGCAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAGCGCTCACCAGATAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTACGGCTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGTTTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : TCTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGGTCTCCTTATTTAATGCGCTCTAGCATCACACCTGCTTCCATATGGTGGGTGTAAGGAAATTGGTCGAAGAGGGCAAAGCGCACCACTTGATGGGTTTCCCCTAGGACTTGTAAGTTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTAGAGAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAGCGGTAGCTTTGCAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTACCTTCCATCGCCTGAGTAAACTCTTCAGCCGACATGCGAATGATCTGCACGTTGTCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3887-2537 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSIU01000036.1 Vibrio cholerae strain N2705 NODE_122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3886 28 100.0 32 ............................ GACACGCCACCGTGCACCACCGGCTTGGTTTT 3826 28 100.0 32 ............................ AAGAACCTGAGCAAGCCACCAATGAAGCTTCT 3766 28 100.0 32 ............................ ACCTTGATGCAAGTACGCAAACTGGTGCCTGC 3706 28 100.0 32 ............................ CTCACCTTATGCCCGGTGACAAGCTGTCTATC 3646 28 100.0 32 ............................ TGCTTAAAGTTGCTCATCTACATTGGCCGATT 3586 28 100.0 33 ............................ CGATGAATAACTTGCCTGACTCTGCGCTTACTA 3525 28 100.0 32 ............................ TATCTTGTGCTACTGCATATCCTAATCACTTC 3465 28 100.0 32 ............................ ATCCATTTCTGCGATATCTCGCTTAGTGAAAT 3405 28 100.0 32 ............................ CCTTGGGAATAACCAAAGTAGCCACGTTTTTC 3345 28 100.0 32 ............................ TGCAATCCTTGCCATGCCAGAAAGCAAGCTTT 3285 28 100.0 33 ............................ AGTCAGGGAACCAAGTCAGCGACACCCCTTTAT 3224 28 100.0 32 ............................ CACTCCCCGCCGCCTACTGGCTCAAACACGCC 3164 28 100.0 32 ............................ AGTAGCTGGATTCATCAAGTATTTGGTTTTCA 3104 28 100.0 32 ............................ CTTAACAAAATCGTAAGCGACTAAAGCAGCAA 3044 28 100.0 32 ............................ TGATGGCTCTACAGTGGGTATAAATCGTGCAG 2984 28 100.0 32 ............................ CCAAAAGTAAGGATGAAGCATGAAAGTCGTTC 2924 28 100.0 32 ............................ TTTAATGTTTTAAAATCCTCATTCGTGAAAGA 2864 28 100.0 32 ............................ TGAACGGATCAGCGCGATCGCTTGTTCTTCAA 2804 28 100.0 32 ............................ AGTATCGATTATTCGATTATGGCGGCCTTAGA 2744 28 100.0 32 ............................ TGTGGGGGCTGTGTCAGTTATGCTGAGAATTC 2684 28 100.0 32 ............................ TTTTGTAATTTGAAATCAACAACCCAATTTTT 2624 28 100.0 32 ............................ TTAAATCAGTTGGAGATAATCCTATGAAATTT 2564 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTGCAGTTGTTGTGTTTGAGTTTGGTGGTAATGCGTTGGCAGCCCCTTAGGCGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGGATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATAAAGTTTCAT # Right flank : TATTGGTAAGTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGTAGCATTTTCATTATGCATTGATTTTATTGGTTTTTAGTGCAATGCGGTAAGTTGGTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGAGCCAATATGGAGAAATTAATTTGTACGGTCCAAATCCAAATGATAAAGAGCCAATGAAAGGTTTTCCTCAAGTCGGCTATCTAAAAAACTATATTAAGTCTCCAAATATTGAAGTTGGTGATTATACGTATTACGACGATCCTAATGGGCCTGAGAATTTTGAAAGTAATGTGCTTTATCATTTTCCTTTTATTGGGGATAAGTTAAAGATTGGAAAATTTTGTGCTATTGCTAAAGACGTTAAGTTCATTATGAATGGTGCAAATCACAGTATGTCAGGTTTCTCAACTTACCCCTTTTTCATTTTTGGCAATGGTTGGGAAACGTCAGCCCCACAAGTTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //