Array 1 1346522-1341028 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049234.1 Campylobacter concisus strain P15UCO-S2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1346521 30 100.0 34 .............................. GCAAGCTCGTCATCAAAATCGTTCTCTTCTAACT 1346457 30 100.0 37 .............................. TCAAAGTGCAAATTTTGATGAAATAAAAAATATTGAC 1346390 30 100.0 37 .............................. GTTGAAAAATTAAATCAAATTGTAGATAACGCAAAGT 1346323 30 100.0 37 .............................. GCATCGCCATAAAGCTTTCTCTTTTTTGGTATATATG 1346256 30 100.0 36 .............................. ATGAAGACCTAGCAGAGTATAAGTTTTTGGGACTAA 1346190 30 100.0 37 .............................. TTGGGATGAAGTCGTTGGTAGTGATTGTCGCAGGGAT 1346123 30 100.0 33 .............................. TGACCCAGCTGGCTCGTTTGTTGCACGGCTCGA 1346060 30 100.0 36 .............................. TCTTTTAGGTTTTTGTGACGAAGTTCGTCCGATTTC 1345994 30 100.0 35 .............................. TTGCTACTTGTAATGCTGGTGAAAATTTTAATACT 1345929 30 100.0 36 .............................. CTGCCTTTGTTGGCACGTATTTGATGTGTTGGATAA 1345863 30 100.0 34 .............................. CCTCTTCTTTAACCTCCGCATCATCAAAATCAAA 1345799 30 100.0 35 .............................. CTGCCTTTGTTGGCACGTATTTGATGTGTTGGATA 1345734 30 100.0 36 .............................. TCTGCGATCTTTGTTATATTTAGTCTATCATATGGA 1345668 30 100.0 38 .............................. ACAGCGAAGAATACGCCATAAGCAACAAGAACAGCACC 1345600 30 100.0 34 .............................. CTTTGAAATTTGATAGGCTATAAGGAGTAAAAAA 1345536 30 100.0 36 .............................. ACTGCTGGGGCTATTCAGTCTGAAAGCGTGCGTAAA 1345470 30 100.0 38 .............................. CCGTCACCCTTTCCGTCTTCTTTGCCGTTGCCACTATT 1345402 30 100.0 37 .............................. GGTATATGTCCAACCCTAGTATTGTGGAATATAACAT 1345335 30 100.0 37 .............................. TATAAAGAACAGCAGTTGCATAAGAAAGGATTAAACC 1345268 30 100.0 36 .............................. CCTTTAAGGAAGTGAATATGCGAGCAAGGAATTTAT 1345202 30 100.0 37 .............................. TATAAAGAACAGCAGTTGCATAAGAAAGGATTAAACC 1345135 30 100.0 36 .............................. CCTTTAAGGAAGTGAATATGCGAGCAAGGAATTTAT 1345069 30 100.0 37 .............................. ATTGAAACAAACGCAGAAACTGAGAAAATAAGCGAGC 1345002 30 100.0 36 .............................. GTTTATAGACTTTTGAAAAGTCAATGTCCCTATTAA 1344936 30 100.0 35 .............................. TTGTCATTAAAATGCTAATACCAAGACCGACAGCA 1344871 30 100.0 33 .............................. CCCACGACTGGCGGCAACGGAATAGGAGCTGCA 1344808 30 100.0 34 .............................. TCGATGAAGCTAAACGAGCCAAGAGGCAAAATAC 1344744 30 100.0 36 .............................. ATACTGCTACTTCTTTTTCGGCACTACAAAGCGAGC 1344678 30 100.0 35 .............................. TTTCTTGTAATGCAGAATTTGAAAGAGTTTTAAAA 1344613 30 100.0 39 .............................. TCACCAACAAATGGCTGAGGATTTTTGTTGTATTTCCAA 1344544 30 100.0 34 .............................. CCCGTTGGGTCTGTATAATAGGGGCTATTAAGCC 1344480 30 100.0 36 .............................. CAACAAAGCCCTTATACTCGCATACATCATAGCTTT 1344414 30 100.0 36 .............................. TATAAGGAAACAAGCTTATATAAATAGTTAAAGGGG 1344348 30 100.0 36 .............................. ATTTGACAAGAACGCCCAATTTGCAGGGGCGGACGC 1344282 30 100.0 36 .............................. TTATTTGAAGAGTTGCCACTCTCTCCGCTAGAGTTG 1344216 30 100.0 34 .............................. AAAAAGATATAAAAATAGAAATGAACTAAATTTT 1344152 30 100.0 35 .............................. GGATAATCAGAAACAACAAAATGATCAAAAATACC 1344087 30 100.0 37 .............................. GAAAAAGCAAGAGAGCATAAAAGAGATAAGACAATGA 1344020 30 100.0 36 .............................. TTGCCACTCGAGCCGTTATTATTGCCACCGCTAGAA 1343954 30 100.0 36 .............................. TTTGGATCTTCAACACGATGCTTGAAAACAATACTA 1343888 30 100.0 34 .............................. TCCACTCGTCAAACTCGTTTCTAATAAGGTCAAT 1343824 30 100.0 36 .............................. CAGTTAGCTCGTCTGTTTTTATACCGCTTGCATAAG 1343758 30 100.0 35 .............................. AAAAATAATGTGTTATTCATTGCTATTTCTAATCG 1343693 30 100.0 37 .............................. ATTTTCTAGTGTCTTTATAAGTATCAAATTGAATTTA 1343626 30 100.0 34 .............................. CTCAAAGTTTTGTTCCTTTACCAAAATCAAAAGC 1343562 30 100.0 37 .............................. ACGAAAAAATCGTAATTGAATATATCAATAATCTAGC 1343495 30 100.0 39 .............................. TTCTTTATCGTCTGACGATTTTCGAGTTTTACAATTTTC 1343426 30 100.0 37 .............................. TAATGTAAATTTTTTTAACATAAGCCTATGAAAACAA 1343359 30 100.0 35 .............................. GAAAGCGAGCAGTATCACAGCCTAAAAGAGAGAAA 1343294 30 100.0 37 .............................. ACGAAAAAATCGTAATTGAATATATCAATAATCTAGC 1343227 30 100.0 39 .............................. TTCTTTATCGTCTGACGATTTTCGAGTTTTACAATTTTC 1343158 30 100.0 37 .............................. TAATGTAAATTTTTTTAACATAAGCCTATGAAAACAA 1343091 30 100.0 35 .............................. GAAAGCGAGCAGTATCACAGCCTAAAAGAGAGAAA 1343026 30 100.0 37 .............................. ACGAAAAAATCGTAATTGAATATATCAATAATCTAGC 1342959 30 100.0 39 .............................. TTCTTTATCGTCTGACGATTTTCGAGTTTTACAATTTTC 1342890 30 100.0 38 .............................. ATTAAACTTCGATATATTCTTATTAAAGCTAAACTTGC 1342822 30 100.0 34 .............................. TATAAATAATCTTCAAGATATAAAAAATCTTTAA 1342758 30 100.0 35 .............................. ATTAAGCTAATCAAGCGCAATAAATTAAACTTAAT 1342693 30 100.0 36 .............................. ACTAAAACTAAAAGTGAGCTTTTAGACGTAATGGCT 1342627 30 100.0 36 .............................. ATTGCATTTAAATTAACGCTAGTTGATTTTTATCGC 1342561 30 100.0 36 .............................. GAGAGTTTAGCACTCTCAACAATTTGATTTAACTTT 1342495 30 100.0 38 .............................. ACAGCGAAGAATACGCCATAAGCAACTAGAACAGCACC 1342427 30 100.0 33 .............................. AATTAATGATGATACTATATTTGATGTAGAACA 1342364 30 100.0 34 .............................. TATTATGTTAATAATAGCAAAGCAACTAAAGAGA 1342300 30 100.0 36 .............................. ATTCGTCTAAAGTTTTAAACAATTCTAACTTTTCTA 1342234 30 100.0 34 .............................. TATTATGTTAATAATAGCAAAGCAACTAAAGAGA 1342170 30 100.0 34 .............................. AATGCAATTTAATCATTTTCTATAATGCAATTAA 1342106 30 100.0 35 .............................. GTTTGAGTGCAAGGCTTTTATCTCATCATCTTCTA 1342041 30 100.0 36 .............................. GCACAGTGATAGTGTCGCCGTCAGATATTTTTATGA 1341975 30 100.0 38 .............................. GCCCTTTCCAAATTTCAAAAAATGCGTCAAGTATTATG 1341907 30 96.7 35 ..........G................... ACACCTGCGAGGCTAGCAAAATATTCTTTGCTTTT 1341842 30 100.0 33 .............................. TCGGTCTTTGCTACTTGTTCTTTGCTTAGCCCT 1341779 30 100.0 36 .............................. TACAGTGTATCGAAACACACTATACCGCCCTCATAT 1341713 30 100.0 35 .............................. TTGTGGCTACTCCCCTCTTTGCCTCTTCAGCCAAA 1341648 30 100.0 34 .............................. TTCTGTATTCCTCTCTATCAAAATCCCAAGTATC 1341584 30 100.0 36 .............................. AATGTCGCCCTGATTTTTATAATGAGAAAATGGGTG 1341518 30 100.0 38 .............................. TATAAATCTGTAAAATAATCATTTACAGATACTTGATA 1341450 30 100.0 35 .............................. ATGATGGAGAGGGTCATTGGCTTGATCCTATTACG 1341385 30 100.0 37 .............................. AAAACAACCTTTTGCTCTACTTCATCGGTAAAGCCAG 1341318 30 100.0 34 .............................. TTGGTTCTCGATGTTTTAGGGGTATTGCTTTAGA 1341254 30 100.0 37 .............................. GCCTTATACATCTCCTCCGCCCAGTCTAGCCATATAT 1341187 30 100.0 34 .............................. TTTGCAACCTAGAAGGGCAAGACTGGGAGAATTT 1341123 30 100.0 36 .............................. CATATATTGGCTTTAACTCTACAAAGACAATCCCTA 1341057 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 84 30 100.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCACTAAGCCTACACCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTGATTTTTAATATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGTCTTTGCGAGACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAACAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCTTATGAAGGATTTAAGTGGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTAGGGCTTGGCGTATTTATACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCATCAAAAGGCCTATAAATCAGCTTTTTGGTGCT # Right flank : ATATGTTTTCAACTTCATTTTTAGTTTGATATATTAAATTATTAACATGAGTATTGATATTTTAAAATATTTCTAAAGAAGTTGGACCCAAATATGGGTCCGAATAAGGTAGTTATAGACCTTCAAAAGGATTTGAAACTACGTCTTTGCGATCAATTATATAAGGTATGATGGCTGCGTGACGAGCTCTCTTGATTGCTTTTTCTACCATCTCTTGATATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGATAAGCAATACTTTAAAAGTGAAGTATCTTTGTAGTCTATAAAATCAATCTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCCTTCAAAATTGTCAGCGTCAACATTTATATCAGGGATTTTCTCTTCATAATACTCTTGTTGCTTTTTATTTTGTGGCTGTGCTTGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //