Array 1 664268-662464 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAABZZ010000001.1 Neisseria flavescens strain N13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 664267 33 97.0 33 C................................ CAACGCGCCGAAAAATAGGACGGCATTTAAAAC 664201 33 93.9 33 GG............................... ATTTGTTGTCTCACTTCCTAAAGAATCGTTTAA 664135 33 93.9 33 AC............................... ATCCATTCCGCGCTTTATACCGACACCATACTC 664069 33 97.0 32 .G............................... AATGCCTGCCAGAACATTTGCAAGCATCTTCA 664004 33 93.9 34 AC............................... ACTAGCAAGGCATTTATCATATAAACGCGCCGTT 663937 33 97.0 31 A................................ GGCTATGGTCGAAACCATCGGCCTAGTCATA 663873 33 97.0 33 A................................ ATATAAAACGGTAAATATATTAGAAGTAATTTA 663807 33 97.0 32 .A............................... CAGCAGAGCTTGCAAACGAGGCTTGCCCGCAA 663742 33 100.0 32 ................................. TTTAACTGATTGCTTGTCATAAAGCCTGCTTT 663677 33 97.0 32 A................................ TGTGGCCGGACACAACTGACGTTATGGGGGTT 663612 33 100.0 32 ................................. TCGCGGCTGCGTATCCTGCATGAACCGAAAGT 663547 33 97.0 33 A................................ ACGCGCTGGAATACTACACGGCTGGCAGCGTGC 663481 33 97.0 32 C................................ ACGCGCTGGAATACTACACGGCTGGCAGCGTG 663416 33 93.9 34 CC............................... AATCGGCGGAAGCGTTACCGCTCGAGACGAATTG 663349 33 93.9 31 AA............................... CTTTGGGTAAAGTGAGTGTGTTTGCCGCCTC 663285 33 100.0 32 ................................. AAAGAAACGAAGCAGCCGCCGCTTAAAGACGT 663220 33 100.0 32 ................................. TCAACCTTTTGGACGAAGACGGCCTAATGTTT 663155 33 97.0 34 .C............................... TGCCAAAGCTCACGCGCCTGCCGGTGGCGGTGGT 663088 33 93.9 32 GG............................... ACGCAATTACGCGCCCTTGCCGATAACTACGA 663023 33 97.0 32 .G............................... TATCTTGGAATTTGACGGCCTGTTGACCCAAA 662958 33 97.0 33 .C............................... TTATGCGATCCATTGAAATATCCGCATTTTTCA 662892 33 97.0 32 A................................ AATCGTCCTGACGGCTGTGTATAAAAGCAACT 662827 33 93.9 32 GC............................... ATCACATATTCGCTGTGTCGGGCGAACTCTTC 662762 33 97.0 32 G................................ AGGCGCGATGGATTCGCCCATTTTGGCTAAAA 662697 33 93.9 32 AG............................... AGGTCGCTGTCGTCGTAGACGGTGTCTTGGTC 662632 33 100.0 37 ................................. GCAGTGTTTTGGCCGTGTCAGCAATCACTATCGCGGC 662562 33 97.0 33 .C............................... CAGCAAAACCCTCTACTCGCCGCCTTTACCGGC 662496 33 93.9 0 CC............................... | ========== ====== ====== ====== ================================= ===================================== ================== 28 33 96.5 33 TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CTGTATATGGGAATACAAAATGCTAATGCTGATTACTTACGATATTTCGTTGGAAGACGCGGACGGACAGGCAAGGCTACGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGATATCGCGCCCGATCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCTGAAACTGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGGAAAGTAGAACATCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAATAATCAGGATATTGCGAATGCGGGCGTAACGGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTAGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAACAAGGCTTTTAAGAGAGG # Right flank : TCTGCCACCGTATCTCATGTCTAAGTAAGGAAGAGGGGCTGTATGTTCAAATATTGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTCATAAAGGGTAATCAATAACAATGCCGTCTGAAAAAGTTTCAGACAGCATTTTTTCTATTTGCATATTAAATTTAATATCATATTATCATTGCATAATATCAGTTTAAATTTTTTAGAATTTCAATATGAAAACCCTAATTTACTACGCCCATTCTGCCCAAGACAAACTCGGTAATCTCTTGCCTTACGAACATTGGCAAACCTTACAAAGCCATTTGGTCAATGTTGGGGAAATGGCGGTGGAGTTTGCTCGGGTATTCGGTGCCTGCCATACTGGACAGCTTCATGACTAAGGGAAATATTCGGAAGCCTTTAACCGCCAATTACATGGCAGCCCTTTAGTCGATCAAGCTATCGCCGGAGCC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //