Array 1 137111-137690 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVMV01000010.1 Cronobacter sakazakii strain MOD1_Jor146A Jor146A_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 137111 29 100.0 32 ............................. CCAGCCAGCCCCAATGTGTCGATAAAAAGTGA 137172 29 100.0 33 ............................. CACACGGCGGCACAGACGCACTGAGCAACCTGC 137234 29 100.0 32 ............................. CGGGTGTGCCTTTTGGATGTAATTTCCACGAC 137295 29 100.0 33 ............................. CTCCGCAAACTGAAACGCGACCGTGAAGTGGCG 137357 29 100.0 32 ............................. CCAGATAACGTTAGAGATGGTGCGCTAATGCA 137418 29 96.6 31 ............................A TACGCCCAGGCGTCAGACGCATACAGGCTCG 137478 29 96.6 32 .C........................... AAGCAGACAAACTGGAAAGTTGTTATCTGGAA 137539 29 93.1 32 .C..........T................ ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 137600 29 93.1 32 .C.................A......... TACTTTGAGAAAACCGCGCAATCTGTGCTGGT 137661 29 79.3 0 .C...........C...A..A....T..T | C [137686] ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.9 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : TCCCGCGTTCTTCGCGCCTGTCAATCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163904-164664 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVMV01000010.1 Cronobacter sakazakii strain MOD1_Jor146A Jor146A_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163904 29 100.0 32 ............................. ACATACTATGAGAGCGCAGCGGGCGAGCGTAT 163965 29 100.0 32 ............................. AGGGGATGAATCACGCGTACCCGTGCCGTGTA 164026 29 100.0 32 ............................. CTTTCGCTTCAACAGTCACTGAGCCGTCAGTG 164087 29 100.0 32 ............................. TTTGTATATTCCACATCTCTTGGCGAGAAGAC 164148 29 100.0 32 ............................. TCTATTGAGCGCCCCTTGCGGGGCGCGCTCCT 164209 29 100.0 32 ............................. ATCACGCCCGGCCAGCGTGCGTGGGTGAAATA 164270 29 100.0 32 ............................. CCTGTATCGGAAATAACAACGATTTTGTCGTA 164331 29 100.0 32 ............................. GCAATCTGCAATAAAGTTCACTGGCTGTGCGC 164392 29 100.0 32 ............................. ATGACGTGTTTATGCTGGAGTTTGAGAAGCCA 164453 29 100.0 32 ............................. CAGCTAACGCAGGCGCGTGCGCGTCAAAACGT 164514 29 100.0 32 ............................. CCGAACTTTGTCGCGGTATTCGCGGGTTGTGC 164575 29 96.6 32 ....C........................ GCGGTGCCGCATGAGCAAAGAAGTCGAAAAGC 164636 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTTGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATAAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCGGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATTCCGGTGGATTTGGACGGCCTGCGGCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCGCGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 476557-477546 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVMV01000001.1 Cronobacter sakazakii strain MOD1_Jor146A Jor146A_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 476557 28 100.0 32 ............................ ACATTCTCCGCCGCCAGCGCGTCGCACTGCTT 476617 28 100.0 32 ............................ AAAGGCGAGCTAAATAAAGCACTGGCTCAATG 476677 28 100.0 33 ............................ CTGTTGTGCCACTACCAGCGAACGGATCTAACA 476738 28 100.0 33 ............................ TCATTAACACTTTCGTTCAGATGGGGGTTGAAT 476799 28 100.0 32 ............................ AAATGCCTCGATGCTGGCGGCAATTTCCTCTG 476859 28 100.0 32 ............................ ATGTCTGGCGGCGGCAGGCGCCCAGATTCTTC 476919 28 100.0 32 ............................ AGCAACACCAGCCCCGCGACGCGCTCCTGATC 476979 28 100.0 32 ............................ GTTACGACGCCGATCACGTCGAGTTCGTTTAG 477039 28 100.0 32 ............................ AGGATATCGGGCTAACCGTCGCTATCAAATCC 477099 28 100.0 32 ............................ GCAGCGGCTCCACCGAATGAACCGATTGATGC 477159 28 100.0 32 ............................ AGGGCCGGAACTGCCAGCTATGTTGACGGCGG 477219 28 100.0 32 ............................ ACAAGTGCCGGATACAGAGCCACGTAATGACG 477279 28 100.0 32 ............................ TTTAGCAAACGCCAGCAGCACGGCGAGCTGTC 477339 28 100.0 32 ............................ CGTCTTCGTAAATGCCAAATTGTCCGCCATTG 477399 28 100.0 32 ............................ AGCGGGTCGTTGGTGTGTTGCTGATTGATCAG 477459 28 96.4 32 ...........G................ GATTATTCACGAGCGGGGCGCTCTCACCTGGC 477519 28 96.4 0 A........................... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTATAAGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : AACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAGTAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCATGGGGAAATTATCTATAAAATTTATGGTTTCTGCTGTAAGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCAGTGCTAATTAGCCGATATAACGGCGATAACACGTAAGAACCACATTAACTACAGACATTTGCAGGCTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAATAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAATTGACATTTAGTGTCATTTATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGACCGGAATGCCGTAACGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 486646-488414 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVMV01000001.1 Cronobacter sakazakii strain MOD1_Jor146A Jor146A_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 486646 28 100.0 32 ............................ TGCGCGTTTTCCGTTTCGATAACGGCTATTGA 486706 28 100.0 32 ............................ CCACCGAGGCCGCGCGTGCAGCCGCACCGGCA 486766 28 100.0 32 ............................ CGGAATAAAACCGAAGCAGACCATCACGTCAG 486826 28 100.0 32 ............................ GCTGATTCGCTGCCTGCTCAAAAATAGTCCGC 486886 28 100.0 32 ............................ ATCCCTGGCGAATTTTTTCATCCATCCATGAC 486946 28 100.0 32 ............................ ACGCTGGGAGAATGTGAAATGAAACGCGCGCC 487006 28 100.0 32 ............................ AACTAGGCAGGATCACCATGAAAGAGCTGCCT 487066 28 100.0 32 ............................ GCTGCACGACGCAGGAAAGCTTCCATGCCCGT 487126 28 100.0 33 ............................ GTCCCTCGCGGCCGCGCAGGAGCTGATGCCCGG 487187 28 100.0 32 ............................ AGTACGTAGCGGATAAATACCAGGTGCCTCCC 487247 28 100.0 32 ............................ ATACCCCGAACTTCTCAATCAGAGGAATGAGC 487307 28 100.0 32 ............................ TCCATCTTGTCCAGGCGCTTTTCCATCTCGTC 487367 28 100.0 32 ............................ ATCGCGTGTTGATGCTGGCCGCAGCATCTGCA 487427 28 100.0 32 ............................ AGGGCGCTCAGATTGCCGTCATATTCGTTCTT 487487 28 100.0 32 ............................ TGCACGCCGGCGTTTTGTTTAAACGTCGCGTT 487547 28 100.0 32 ............................ GGCATTACGCCGGGTGAGGTTAAGTTCCGCTA 487607 28 100.0 32 ............................ TTTGCTCTATCCTCGTCAGATAAGGAATAAGC 487667 28 100.0 32 ............................ ACGTCGTCAGTTTCAAGCTCACTGCGAAGGAA 487727 28 100.0 32 ............................ CGCTACCGTGTGCTTCATTCACCGCGCGAAGT 487787 28 100.0 32 ............................ TTGTTGTGCAGGCCCGCGAACGCCTCTGTGTT 487847 28 100.0 32 ............................ GCGAACAGCAAACGGCCCGGAAACACCTCATT 487907 28 100.0 32 ............................ GTTTTAATGCCGAAGAAGGCACGGCTGACCTT 487967 28 100.0 32 ............................ TCCGGCGTTCGGTTTGCGGCGGTATCGTCCCA 488027 28 100.0 32 ............................ GTTGTGGTGAATGCGCAGGCTGATGCGCTGAT 488087 28 100.0 32 ............................ TCAGAATGGCCCAGCGATGACGGCTACCGAAG 488147 28 100.0 32 ............................ GTACGACCCGCAGATTGCTGAGTACGAGCAAA 488207 28 100.0 32 ............................ AGCGCTGCTATCAGCTCAAGAACGGCAGCGGG 488267 28 100.0 32 ............................ AATGGGGTCATTATCGGTTCCTCCGTGATGCC 488327 28 96.4 31 ......................A..... TCGAACACAGCGACGCCGTTCCCGTCGCCGC 488386 27 92.9 0 ........................-..T | T,G [488406,488409] ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCCATGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACAGGTTCAGGGCTGGCGCACCGTGACGCGCGTACAGGTGAAAAGCAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCGCAGCAGCGGCTTTCTGGTTTACAGGTGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCACTACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTCGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTAAGAAGTAAGCAGCGTTTATATTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : TCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGCCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAATCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGAATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //