Array 1 15932-25167 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPC01000121.1 Methanosarcina mazei strain 3.F.A.1B.1 scaffold49_1_size32424-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 15932 37 100.0 41 ..................................... TGAACTTTTGAGAACAGTTTCCAATCAGTATATTGGTTCTA 16010 37 100.0 35 ..................................... CAGAGGAATGGACCGAGGGTCTAACTGATATTAAT 16082 37 100.0 37 ..................................... AAAAATTTAGTTTTGACAGCAAGCCGGGATTCTGATT 16156 37 100.0 36 ..................................... TCGAGCCTATTACGAGTTCGCCCGATGTTGTAATAA 16229 37 100.0 34 ..................................... TCGAATCCTTCTTCTCTTTCATTTCAACTACAGT 16300 37 100.0 37 ..................................... GCATGGACTATACGGCATCCATCGCCCATACTGTCTT 16374 37 100.0 36 ..................................... CCTCATTTGTGCCATCTGTCATGTATAATTCACATG 16447 37 100.0 35 ..................................... TCATACCGACAACGAACAACTTGTTTCCTGCAGAA 16519 37 100.0 35 ..................................... TTGGGCCCTTGATTTCATAGACTCCGGCATTTAGG 16591 37 100.0 37 ..................................... AATTGTTTCTCAGCGCATTTCCAGCGCTTTTCTGATA 16665 37 100.0 34 ..................................... TGTGAGTTCGACTCGTTGGATTCATTCCGGAAAG 16736 37 100.0 35 ..................................... TCGCCCCTTCATCGAGGATGCAGGTTATTGTCTGC 16808 37 100.0 36 ..................................... GTATGTAAGTTGAAGCAACCGCACATAGACAATTTT 16881 37 100.0 36 ..................................... TTCAGCTTGGGCTTTCCTTCTTGCAGTTGTTTTTTC 16954 37 100.0 35 ..................................... CGACTTTCCCGTTTTGGTCTACAAGGGCAAGTTGC 17026 37 100.0 35 ..................................... TTTTTTCTCGATCATTCCCAAAATCTTCAAAACAT 17098 37 100.0 35 ..................................... ATCAGTTCCCGGTTCATCTCAGAATTCAGTATCTC 17170 37 100.0 34 ..................................... TATATAGTATTAGGTTGTATAGTATATTGTACAA 17241 37 100.0 36 ..................................... GAGTTAACGTGGCGTCTTCATAAGAAGATGCAATAT 17314 37 100.0 39 ..................................... ACGGGACTAGCTGCAAGTTCAGGATCATAATTAAAACCG 17390 37 100.0 35 ..................................... TCTATTGTGATAGTGTGTGCGCTTAATTCATTATT 17462 37 100.0 40 ..................................... TCAGTCTGCTTGCCCGGAAGATTCGGCTGAATTCCTCAGT 17539 37 100.0 33 ..................................... TGCTTTGGTCCCGTACATAGCTATCTTGGCTAT 17609 37 100.0 35 ..................................... GGAGGATCAGAAGTACAACTAATTGTTGCCGACAT 17681 37 100.0 35 ..................................... CAATAAGCAATCTGCAAGCCATCCGAGTACGAATC 17753 37 100.0 34 ..................................... ACATCTCTTCCATAGTGGCGATACTGCCAGGCTT 17824 37 100.0 35 ..................................... AGTGTCAGAATAGTAACCTTAAAGTACAATAAAGT 17896 37 100.0 34 ..................................... CTCATTGTATAACTTCCTTAATTTTCTTATAGAA 17967 37 100.0 36 ..................................... AGTCATCTACCCTGATTGATTGATGGGGGCTTGTTA 18040 37 100.0 37 ..................................... CTAGATTCCAACATTCTAACACTTAGAAGCTGTTCTT 18114 37 100.0 35 ..................................... CTTCCCACTTAAACCTTATTCCTTTTGCTGATTTT 18186 37 100.0 34 ..................................... CAGTTAGTAAACCAGAGTCATCTATTGTTAACAT 18257 37 100.0 35 ..................................... AAACTAATAATTCAAGAAAATTAAAGATATATGCA 18329 37 100.0 36 ..................................... AAGAGGAATCACTATGATAGATCACGAAACACCCGA 18402 37 100.0 36 ..................................... TGAATAACCATTAACAGATATTTAGCCCTTACAAGT 18475 37 100.0 36 ..................................... TCCTACAAAAACAGATAATGCTGCAGCATGGGCAGG 18548 37 100.0 37 ..................................... GGTTAACGTATACCAAAAACATTAACTAGAGAACAAT 18622 37 100.0 38 ..................................... ATCTCATCTGGAACCCATATATTCATTCTCGGCATTGA 18697 37 100.0 37 ..................................... AGTGGATAGTGTCATATTGAAAACCGTCACCGACTTT 18771 37 100.0 34 ..................................... AGAAAACGAGATGGGCTGCTATACTTGTAACTTC 18842 37 100.0 36 ..................................... TTCCCTCTCCTTTCATCAACTGCAAAGACATATCAC 18915 37 100.0 34 ..................................... CAAAAAGCACGATAGTCAAGGACATAATCACCGA 18986 37 100.0 35 ..................................... TGCACATGTTTTCAAAGACACCATGAATCCATTGA 19058 37 100.0 36 ..................................... AAATAAGTTGTTCGGTTTCCGAGTCGGATAGCTGCA 19131 37 100.0 36 ..................................... ACCGATATGGAAAACACACAGTAATATAAAATTCAC 19204 37 100.0 35 ..................................... TAACAATTTGATTACAGGTTGTGGATGGGGAAACA 19276 37 100.0 36 ..................................... ATCATATTTTCTATGCATAACTATATATATTATGAA 19349 37 100.0 36 ..................................... TTTTCTTGTACAAACCGATGAAGTTCGTTTTGTAGA 19422 37 100.0 37 ..................................... TGTATATGTGTGTTATCAGTAAATGTAACGATATCTT 19496 37 100.0 36 ..................................... CAGTCCTGCAGTGTATTTGTTCGGGAATGTGGCACA 19569 37 100.0 34 ..................................... AAGTTCAATGGAGCCAAACAATGTCAGATGAAAA 19640 37 100.0 34 ..................................... CTATTCTTACCATCGTTTAAGCCTCCTGTATTTC 19711 37 100.0 35 ..................................... TTCCCTGCATGAAGGCGGGATATCCTCCATAGATC 19783 37 100.0 38 ..................................... AATGTGTGTGCCTGGTTGAGTTGCCGCATCTTTTGAGT 19858 37 100.0 34 ..................................... ATAGTCGTTTGCTGCACATATTACACATTCACAA 19929 37 100.0 37 ..................................... TCAAGAAACACTGTGAAAATCTGAAATACATTGATAA 20003 37 100.0 37 ..................................... TTTTATAGTATGCCATGTTAGATCAAACTCCTATTAA 20077 37 100.0 35 ..................................... ATTCACGCCATCAAGGGGATTGCATTAGGCTTGTA 20149 37 100.0 35 ..................................... TATTCAGTTGAGTCGGCTGTCGCAAATGCTTCAGC 20221 37 100.0 33 ..................................... CTTTTGAGTTCTCAATCCATCCCTTTATATCCG 20291 37 100.0 35 ..................................... CAAGCTGGCGACATTATAACCGTGCGGCTTGATCG 20363 37 100.0 35 ..................................... TAAAAAATGAGGTTGCAATGAATCCGGTTTGCGGG 20435 37 100.0 37 ..................................... ATGTGAGTATAGCGGTTCCTGCTTCTGTTACAGTTCC 20509 37 100.0 32 ..................................... ATTAACGTAATTATTATCATTTTGTTAATTGT 20578 37 100.0 37 ..................................... AAAACGTTAAGCAGGGAGCTAATGACCTTTTCCAAGA 20652 37 100.0 35 ..................................... CTGGGATAATTCACCGGGGGAACTATGGCAGCAGG 20724 37 100.0 35 ..................................... CGAAAAGGTATACGACCAAAAAAAAGACATTCTTA 20796 37 100.0 36 ..................................... ATGAACGTGTCCAGGTCTGACCGTGTAAGGCCACGT 20869 37 100.0 34 ..................................... CTGTTACCTTATCCTGGGTAACAGTTGGGTAACA 20940 37 100.0 35 ..................................... ATATACGTTTTTGCTGTATCGGTCATTTTCGGGAA 21012 37 100.0 36 ..................................... TGGAAATATAAAAGAGTGTACCTCAATTCTGGAAGA 21085 37 100.0 36 ..................................... TGATCGGAGCGGTCAGAGGATTTGCGTATTTCCTTG 21158 37 100.0 35 ..................................... TTATATATTTCTACATCATCGACTACCCCCATATG 21230 37 100.0 34 ..................................... CTGTTTTCATAGGTGAGATTAAAGGTAGTTTCTC 21301 37 100.0 35 ..................................... TCTAGGATCACTGGATATCTTCAGTCTGTTGAGGG 21373 37 100.0 36 ..................................... TTTCCAAGACGGAGATATCTGGAGAGTTGATAATGA 21446 37 100.0 36 ..................................... TTTTAGATTTGTAATTTGGAAATCCTTTATTTTCCC 21519 37 100.0 36 ..................................... ATAGGAGATTGAAAAAGGGTATTGAATGCTTGTCAA 21592 37 100.0 35 ..................................... CCGAAGCCCGAATGCATTGATAAGATAGATATCGC 21664 37 100.0 36 ..................................... CGCACAGTCGAGCGGGGCTGTGTGGCTTACGTTGCT 21737 37 100.0 35 ..................................... CATTTTACAACATTTACCAAGCCTGATTATGAGGT 21809 37 100.0 35 ..................................... ATTCTTTTGGATGTTCTGAAAACTCGCCTTGAAGG 21881 37 100.0 35 ..................................... TTTGGTGTCATGTTGAAATCCCGATCACCGGAGAA 21953 37 100.0 34 ..................................... CCATCGTAGCTCATGACGTGAAGACAGCTTTCAC 22024 37 100.0 35 ..................................... CAATTCTATGCAGTTTTCGGCAGATGATTGTTATA 22096 37 100.0 35 ..................................... TGCAACGTCGGGGACCAATCCAGGTCAGCCTCGGT 22168 37 100.0 35 ..................................... CAGGAGATGCTACAGCAGAAATTAAACTCGATGAT 22240 37 100.0 36 ..................................... CGGATACCTGCAACCTGATTATATCGTCAAAATTGA 22313 37 100.0 35 ..................................... GGTCACTTCGTACGACCGCTGCGAAGCCGTTCTCT 22385 37 100.0 36 ..................................... AAATAAGGTCGTCTGTGTCATGTAAAGTGGTTTTGT 22458 37 100.0 35 ..................................... ATAATTAATATGGGATCTTAATATATAACCAATTG 22530 37 100.0 37 ..................................... TTGATTACATAAAAGCATGTGAAACTGTCGTGGACGA 22604 37 100.0 35 ..................................... CGGTTTGCGTAACTAGCGTAACCAGTTACTTACGC 22676 37 100.0 36 ..................................... AAAAACGGGTAGAATAATAATACACTAGCGTATCAG 22749 37 100.0 36 ..................................... ACTCTTACAAAATTCGAGAAAAAACACCTGTTTGGG 22822 37 100.0 35 ..................................... TGACAGATTTTACGAAACGTAGTTCACTTTCGATG 22894 37 100.0 35 ..................................... ATCAATCAGTTCTCAATTCAGACCGGCTTACGATT 22966 37 100.0 36 ..................................... CATCACAGTAGAACAAAAACGAGAGCTTAAGACGTT 23039 37 100.0 35 ..................................... TTATTCATTTTGGTTTGCCTTTGACCTACGACAAA 23111 37 100.0 34 ..................................... CTGTTTCAGAAATATGTTTCATCATAACAGGTGG 23182 37 100.0 35 ..................................... TTCCGAGAATCAAAAAAATTGATACCTCTCTCACA 23254 37 100.0 35 ..................................... GTAGTTTTCGACTTGTCCGGGCTGCCGTCTAAAAA 23326 37 100.0 36 ..................................... ATAAAGTTCGGGCGAAATTAGTTATAAATTATACTG 23399 37 100.0 34 ..................................... CAATCTAACGCGACTTGTGCGGGAATTGCTGCCG 23470 37 100.0 34 ..................................... CGGTTAGAAGCATGTTATACACCTTTGCTATAGA 23541 37 100.0 33 ..................................... CAGTTAGAAGCATGTATTACACCTGTGTATAGA 23611 37 100.0 32 ..................................... TTTGAGATTATATACGTGTATGGCCCTCTCAA 23680 37 100.0 35 ..................................... TTATTCAGGAGTCGCAGGGAGAAGAGCCCGATACC 23752 37 100.0 34 ..................................... CTATCATGCTGACACACCCAATGCCCCACAAACC 23823 37 100.0 36 ..................................... ACAGAATCAACAAATATAACCTTGAACAAAGGGCAA 23896 37 100.0 35 ..................................... TAAAAAAGTAGTAACTCCGAGAATAACGTTTTTCA 23968 37 100.0 37 ..................................... ATTCACTTCTAGAGTAATATAGCCCATTTATTCAGAT 24042 37 100.0 34 ..................................... CTTAAATCTGTCGGTGTTTTTAAAAAGAGTAAAG 24113 37 100.0 35 ..................................... TCAAACTTTGTTAAGAGAGGGCTTACCAGTTCAAA 24185 37 100.0 34 ..................................... TTTGGATTGGCTTAATTCCCTTCTCTGCATGAAG 24256 37 100.0 35 ..................................... TAATAAAATTTGGGTATTGAAACCATTACATTACC 24328 37 100.0 37 ..................................... TTTTCTAAAACTGTCCCGATGAAAGTATAATCATCAA 24402 37 100.0 35 ..................................... ATTCTTCGGACTCACCGGTTAATTCCGGAAACACA 24474 37 100.0 36 ..................................... TCTGAGCAATAATAGGCGTCATTGAAGCCCACATGC 24547 37 100.0 35 ..................................... TAAATGTGGTCAGATGAAACACATAGCAGGAGTTG 24619 37 100.0 36 ..................................... CCCGTCTGGTAACTATGAAGAGTACGACGGTACTTT 24692 37 100.0 38 ..................................... CACACTCTATTGAATTCTTCAGGGTTTTCCCACATTTT 24767 37 100.0 37 ..................................... TACACCCGCATCCATTGTTTGAGCACATTTCAGTTAG 24841 37 100.0 34 ..................................... CTGAAGGAGATTACATCCTGCAGTTTTATATTGA 24912 37 100.0 36 ..................................... TTTCGAAAAGTCCGGGTAAAAATTGCAGCGTTGTCC 24985 37 100.0 35 ..................................... ATCTGTAGTCATTTTAGATATACCTCGCAAACATT 25057 37 100.0 37 ..................................... TTTCATTTTTTGTGACACTTATTGTTATATTGTCATA 25131 36 75.7 0 .....T.....T..........G.-GCCT.......A | C [25163] ========== ====== ====== ====== ===================================== ========================================= ================== 128 37 99.8 35 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTTAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : AGTGTTGTGACCTGTGTAGATGTCCGACATTAATATTTCGAAACTTCTACAACAGCCAATATATATCCTCAGTGCGGTAAAGAGTCTTAGAGACATCTGGAAGAGAAAAAAGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATTTGGAAAACAGGGGAAGATGGAAGCGAGATAGTATATCAGATTAAAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 14609-20283 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPC01000112.1 Methanosarcina mazei strain 3.F.A.1B.1 scaffold26_1_size43992-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 14609 37 100.0 34 ..................................... CTTTACTCTTTTGGTCATAATGCAGATTTTTAAG 14680 37 100.0 38 ..................................... ATTGATGGTCTTGCGTTTTCAGTTTGAGTCTTTACAAA 14755 37 100.0 35 ..................................... CCCTGTATCCGTCTTTTTTTGAATCCGATTTTATT 14827 37 100.0 35 ..................................... ACAATACTTTCGCTAATACTGGCTGGCATGGGATT 14899 37 100.0 36 ..................................... ATAATCCAGGAGCGAGAGGACCGGAAAGAAGGCGAA 14972 37 100.0 35 ..................................... AAAATGTATTTTCCAGCATCAGTAACCATAGCAAG 15044 37 100.0 38 ..................................... CGGACATTGACAGAATCATATCAAAGGGCAATTTTGGG 15119 37 100.0 33 ..................................... AAATGATGTCTTGATACATATCTTAGTTTTGTT 15189 37 100.0 34 ..................................... AGGGTTTCATGCTGTTTTCCGTTCATTCATACAC 15260 37 100.0 35 ..................................... TACGGACTGGAATTAAACACGGCTTCAAAGGCGAT 15332 37 100.0 36 ..................................... ATAGCGATTGTATGAACTCCGTGAACATCCTTCGGT 15405 37 100.0 37 ..................................... GATATTAACCACCCAGGCATGGGCGAGTCTGTTTTAT 15479 37 97.3 35 .....C............................... ATCTCCCTCTCTTTTTCATCTAGAGAATTCCGCAA 15551 37 100.0 34 ..................................... ACGACAGAATCAGGACACAAAATAAGCAAGGATT 15622 37 100.0 35 ..................................... CGGGTTCCACATGAACATGGATAGTACATGTTATA 15694 37 100.0 35 ..................................... TCTAATGTCAACTCTATGTATAAGTATGTACTATT 15766 37 100.0 35 ..................................... CATAGTAGCAGACGCATCCCCCGGCTTTGTTTCGG 15838 37 100.0 35 ..................................... ATCGCGTTCAGGTGCGAAGTTCCCATATCCTCCTT 15910 37 100.0 34 ..................................... ATGTATAGAGTTCATATTTTTGTACCATTATTTT 15981 37 100.0 35 ..................................... TGGATTCCTCCGAACGAATCAGTAGCTACAGGCAG 16053 37 100.0 36 ..................................... AAATTTTGATTCCTGGACGTTCTGAGCAGAAAATAG 16126 37 100.0 35 ..................................... CAGCTACTCCTGTAAAATCGTACACCGTTGTAGAA 16198 37 100.0 35 ..................................... TTGTTTACATCTATCATTTTCAATGAAAACGCAAG 16270 37 100.0 36 ..................................... TTATACAGTGCTTCAATAGGTCCGGTCATTTTCTTA 16343 37 100.0 37 ..................................... TAAAAAGAGTAAATGCGTTTTTTGCAGCTAGAGAACT 16417 37 100.0 35 ..................................... ACATACTCAAGTGCTTCAGGTGCAACGACAATAAG 16489 37 100.0 34 ..................................... AATATAATCAACATGGATACACATACATGAAAAA 16560 37 100.0 37 ..................................... CAATATCTTAAGGCTAAGTCCTTCAGAGCTGCACCTT 16634 37 100.0 35 ..................................... AGGCTATGCGTTTCTTAACTCGATTGTTCTATAGA 16706 37 100.0 35 ..................................... TGAACCGAGGGAAGATGATTGAATATATCTTACTT 16778 37 100.0 37 ..................................... ACATTCTTATAATTACCTTCGTTCTCCCAAAAAACAT 16852 37 100.0 35 ..................................... TTTTTATATCAAGTTCGTTCATTGTGTTTTCACCT 16924 37 100.0 34 ..................................... TTGATTCCGTCATTCTGATCTGTAGATGACCAAA 16995 37 100.0 37 ..................................... TATCGTATCCTAATTTTCATTAGGATATTCATGCTTC 17069 37 100.0 36 ..................................... CGTCAATTATTCCCTCCCAATCGACTACAGCAAAAA 17142 37 100.0 32 ..................................... TGGCATATGATTGATTAGATGTAATGAAGTGT 17211 37 100.0 35 ..................................... TCTGCTGTTTGCCCTCAGTGAGTTTCAGGAGATCT 17283 37 100.0 36 ..................................... ATCTTACGGGTTCTGTCATACAGGAACCTCCAATAT 17356 37 100.0 35 ..................................... ATAAAAGTAATCTCACTATATCAGGCACAAGAGGC 17428 37 100.0 33 ..................................... CTTCGTCGCCTGCTGAAAATGTATTTTCGTCGA 17498 37 100.0 36 ..................................... CCTCTCCTTATACTCCGGCAGCTTCTCCTGATATGG 17571 37 100.0 37 ..................................... CAAACCCGGGCAAGCCGGTTACAGGCATTTCAAGAAT 17645 37 100.0 37 ..................................... TCCCGAGCTTGAAAAAGCTTATCTGGCCTAATAAGGT 17719 37 100.0 34 ..................................... ATGCACAGCCAATCGATTCGAGGTCTGTAATACT 17790 37 100.0 35 ..................................... TAAAATGAATGCTGCTGCAGATATGAGACAAAATG 17862 37 100.0 35 ..................................... CTGCCCTATCATCCTGCACAGCATTTGATACAGCA 17934 37 100.0 37 ..................................... AAATCTAGCTTATGCGGTCTTTCTCTCCATTCTTCAA 18008 37 100.0 36 ..................................... TAAAATGAATGCTGCTGCAGATATGAGACAAAATGA 18081 37 100.0 35 ..................................... TGATCCAACCAATCACGCCCAACCGTTTTGTTGGT 18153 37 100.0 34 ..................................... CGATTACTCCAGGGTCACGGTGGAACCCGTCAGA 18224 37 100.0 34 ..................................... TCGTCTGGTAATACGGCATCCTGAGTGAAATAGA 18295 37 100.0 36 ..................................... CAATTATCTTCTTTCCTATCCTCATTACGTCAACTT 18368 37 100.0 34 ..................................... TTGATGGAATCCTGTAGTTTTGGACTCCGTGCGG 18439 37 100.0 34 ..................................... AGGCCAGGGATGAAAAGGGAATTCTCGCCTACCG 18510 37 100.0 35 ..................................... TTTTCGTCTATGTTGCCATGTGCATTACTAGTTTC 18582 37 97.3 35 .....C............................... CAGGTAACTCCTGTTTCTGAAGCATCCGGACCGAT 18654 37 97.3 36 .....C............................... ATCTCTTTGCGTTGTCTTCTAATTGTATCAGTATCT 18727 37 97.3 35 .....C............................... AATATAACTTGTGCGTATTATAGTATAGAGCAAAG 18799 37 97.3 36 .....C............................... AACCCTGCTTATCCTGATGACGGCATTATATTCGGA 18872 37 97.3 36 .....C............................... CTTGTTGCAGTTTGTTCTGTGACTTCTCTGCCATTC 18945 37 97.3 38 .....C............................... TATCGCATGTCATATGTTAAATTCCAGATCAGAACACT 19020 37 97.3 34 .....C............................... TAGTCGTCCAGTTCCGCCCACAGTTCAAACATTT 19091 37 97.3 33 .....C............................... AAAAGTCAGTCCCGGCCAGCCTATGCGCTAAGA 19161 37 97.3 33 .....C............................... TAATAATCTGTTTGACAGTTGCAATGGTTACGG 19231 37 97.3 37 .....C............................... TTCAGGTGTAAAACATGGCATATAAACAGCCTCAGGG 19305 37 97.3 36 .....C............................... AGCTGGGCATTTTGAATCGAATAAACTATATTGAAC 19378 37 97.3 35 .....C............................... TAAAATTTGACTGTTGAATTAATTTCGATGTTGTT 19450 37 97.3 38 .....C............................... CCGAACGTATTGTATTTGGTGGATTATACGACGGTAAT 19525 37 97.3 35 .....C............................... TTATTTAGATCGAAATGTCCTAAAATACCAGCTGC 19597 37 97.3 34 .....C............................... AAATAGCATTAACCTGTTTTGCTTCATCTTCGGT 19668 37 97.3 35 .....C............................... TACTCTTGATGCTTCAGCAAAAACAATATTACTCA 19740 37 97.3 34 .....C............................... AAATGCGACGGACACAGCCATTCAGATGATGTAC 19811 37 97.3 37 .....C............................... GATATTAACCACCCAGGCATGGGCGAGTCTGTTTTAT 19885 37 97.3 36 .....C............................... TTTCCTAATTTGAATTTTAGAAATGGATTTGTATTT 19958 37 97.3 35 .....C............................... CACTATACAGAAACTTGCAGAAATTACACGATACA 20030 37 97.3 35 .....C............................... GCAAATTGATAGCAACAGCTAAAATCTATAAAGAT 20102 37 97.3 37 .....C............................... GCCAATAGTTCTCTTAGGTGATAGCCCTTACATACGT 20176 37 97.3 34 .....C............................... TATAAATCGCATCACATCAAGATCACTGCAAGGA 20247 37 97.3 0 .....C............................... | ========== ====== ====== ====== ===================================== ====================================== ================== 79 37 99.1 35 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CCGAAATTTAAAAATATGTCGCTCGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGACAAATTGAAAATAAAAGCTAACCTGATTGACCTTGAGAGTTCGGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGAACCTTCTGTATAATTTATAATGGCAGGGTTATCAGCCATCACCCAATCAGTAATACAAGGTTTGAAAACATTATGAAAAAAATAATTCAATAGTCCATACCAGATTTCAAAACCCTTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CCTCATCTTTGAGTAAAATTTTTATTTAATTATTATTTTTTAGCTATTTTTATATTTATTTGATTTTAAACTATTGTAGTCAGCATTAAAATAAATTTTCATAATATTGACTAAATTTAGAAACTTTTATATGTAATCGAATATTTTTTAAGAGATAAATTATTTTAAAGGAGCATTTCCGATAATGAATGATGATGAACTTCAACTCATATTCTTGCTCCATGATCTTGGCATATTTTTTAAGAGAACAGGCTTGCCCCCCTTAGAAAAATTCAGTAAATTGACGGAAAATGAGATAGGTAATGGAGGGTCACACTCAATATGGAGTGCTTCATTTGCTGAAGAGCTTGGTCTGAGCCAGGATATCCAGAATATAATACTATACCACCATAATTACGATTCTTTGGAAGGAGAGAATGCAAGAATCGCAAGTGTACTTGGTCAAGCTGCTGAATTCTTCTCAGGAGAAGAAGAGTTGGGGCCGGTAAACCTTCTATCTG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 2 27975-28307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPC01000112.1 Methanosarcina mazei strain 3.F.A.1B.1 scaffold26_1_size43992-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 27975 37 75.7 39 .CT.CA..ACG.......GC................. TTTGATTTAGGGGCAAGGATCCATTGTCTGTTCGCTCGT 28051 37 100.0 35 ..................................... CATATTGAAAAAATGAGAGAGGATCGGATTTTATT 28123 37 70.3 37 A.TCGTG..C.AGA....T.................. AGTGAAATGGGGTTTTTCAGTTTGAAGGTTTTTCCTT 28197 37 91.9 37 .........C..................A.......T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC 28271 37 59.5 0 A.TCGAT.AC.AGA....T........A.....T..T | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 79.5 37 GTCGAGAAGTAGCTTCCACTAAAACAAGGATTGAAAC # Left flank : TATTACTTTATCATTGTCAAAATCAGGAAAAATTCTACAAGGTTATTGATCTTAAAGATCCTCGTGAAGTAAGTTATGAATCTGAGACTTATGTAATTGCTCCTAAAACTATTCCAGAAGATCTTAACTTGGATGGCGGGAAAAAGTTAATCCTGCATATTGTCATATCTGCTCGCCATGTTGAAAACTTTCGGTTACATGATGATCATTTTAATGCAACCAATGTTGCTATAGTTTATAATGTAGACCTAGAGCCTAAAGATGACTGGTTACCTTACGTTCAGGAAATAGTTGAAATAGCAAAACCATTGATCCATCGTTATGAAGATGTTGATGTTTGTCTAATTTGCCCTTCAGTCGTAGCTTTTGCACTTGGAATGGCTTTCTCAAGAAAAGGATCTTTAAAAGTCTGTCATTATTTTAGTGATGGAAAATATAGGCCTGTATTTCAACTCTCCGAGATAGAAGGTCACCCCCCTTTCAGTTAACTGTGAGCTAGA # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAAAAAGCAGCCGATGCGAATCTAATTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTACAATCAATGAATATTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:3, 4:-0.03, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGAAGTAGCTTCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //