Array 1 37931-39240 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040557.1 Corynebacterium diphtheriae bv. mitis strain PC0646 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37931 29 100.0 32 ............................. TTTTACCCCAAATGCTTTAAGCACATCAGGGA 37992 29 100.0 32 ............................. AATTCGAGCTGCTCCTAGTGATCAAGGGTCGT 38053 29 96.6 32 ............................T GATTTCCGCAGGAATGTTCAGAGATATATAGA 38114 29 100.0 32 ............................. CCTGCTTGGACATAAAGAGTATTCCGGTGCTG 38175 29 96.6 32 ............................G ATGATTGCCCTATCTGCTATCACCGCCGCTTT 38236 29 100.0 32 ............................. TAGCGCAGGCAACTCCCGTGCCATGCTGGGGA 38297 29 96.6 32 ............................G GAGAGCGTAGAACCTGTGGAGATCACCCCGAC 38358 29 96.6 32 ............................T CTGAGCTGATCCGCAAGAACGCCGAATGGAAC 38419 29 100.0 32 ............................. TTGTCATGGGCTTTCGGGCTGCTGGCAGCGTC 38480 29 100.0 32 ............................. CATTTCTAGGACAACGAACCGCGCCGTAGGCC 38541 29 96.6 32 ............................G TGACGAGCCGCATGCCGAACCAAACCACCCAA 38602 29 96.6 32 ............................G CCGGCATTGAGCACCTTAAGGCAGAGGGCCTC 38663 29 100.0 32 ............................. CTCAAGGCCAGAGCTGGAAAAGCCGACGCCGG 38724 29 100.0 32 ............................. TCCATTGACGCAGGCTACGGTGTTGCCGCAAA 38785 29 100.0 32 ............................. ACAGGCGCGTGTTTTCTCTCTCAATGAGGGGT 38846 29 100.0 32 ............................. ATACCTTTACGACCATGGGAAAGTAGTGCTTT 38907 29 100.0 32 ............................. AGCAGCAGCTGCACCAGCCACAGCAGGTGATG 38968 29 96.6 32 .........A................... CGGCCAGAAGCTCGCTAACGTGCAAAAGCATG 39029 29 96.6 32 ............................G TTTTGTACCCGCATGTGGGTTTTGAGTGCGTC 39090 29 96.6 32 ............................G TTTTTTGGCGGATCTAAGGGGTATGGCCCCGC 39151 29 96.6 32 ............................T CAGCCGTCTCCGCCTTCGCGTCAGCGTCCTCG 39212 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.5 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAACTGAGGCATTGGCTGGAAACACAGTGCGCCTGCCAACCCGAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGACCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAAAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAAGACTAAGCAAATTTGGGTGAATAGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGTCTCTAAACATGCAGCTTGATAAGA # Right flank : CAAAGCGCGGATGGTGTCGATGTATTTGCGTCAGCAATATGACGCGAATATGTCGAAGCAAGGCAGATACATGCGGACTGATCGGCCGCGATTGATGCCGGAAGAAATCTACAAGATTGCAGGTGGCGACCGTGATATTGCGGTCTCATTGCTGCACAAGAACGGTTTCTTCTTGGATGCCTCACCAACATTGGATTCGAAGCTTAGCTTTTTTACGCGGGACAAAGTCGTGAAAGAAGCGATGGAGAGCGCTCGTGTGAAGTTGAAAGCACGGTATGGCAAAGAGTTAAAGCGTGAGGCGATTAAAATTGGTAGTGGTGATCCTCCGAGCGAACCGCCACGATGGTCGAAAAATGGCGGTGGTGATGATGAGATTCGGAGGCGGTATTTCGAGGATTTGCGTACAGCGGATAAACGCGTGCCAATTGAACACATCGTTACCGGGAAGGTGCATAAGAACGTTATCCAAGGTGCCCATGATCATTCCAGACGTTCATGGG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2212079-2212900 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040557.1 Corynebacterium diphtheriae bv. mitis strain PC0646 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2212079 29 100.0 32 ............................. GGCGCGCAAATCCCTAGTCGCCTCGTAAGCGA 2212140 29 100.0 32 ............................. TGTGCAAATGCCGTCCTTTTCTGTGATCTCCC 2212201 29 100.0 32 ............................. ATTTCAAAATCACCACAATCATTCCCAGCTGG 2212262 29 100.0 32 ............................. CGGGGGCTACCCCCTAACACTAACAAACCGGA 2212323 29 100.0 32 ............................. ATATGCGCACTAGTACGCACCATGCGGTATAA 2212384 29 100.0 32 ............................. CGGCGATCGCGCCGAAAGAAAACGCGTGGCTT 2212445 29 100.0 32 ............................. GCGCTCATGCCAGTGTTTGGTGCCATCGGCAC 2212506 29 100.0 32 ............................. TGATCGATGACCTGTTGTCGGCGAAGCTCATG 2212567 29 100.0 32 ............................. AGCTGATAGGCACCAGAACAGCGGCGCAAATC 2212628 29 100.0 32 ............................. TTCCCAGACTTGGTTCTTGCTTACGACATGAA 2212689 29 96.6 32 ............................T CTGCACCTGAATAAACGTATCGGCACGCTCCG 2212750 29 100.0 32 ............................. GGGTGATTCGCGGTGGGCTGAGGCTGGTAATC 2212811 29 96.6 32 ............................T AGCCTAGCCCCGCCGCTAGGCCTTTAAGGGCG 2212872 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : CGGCAGGCAATCCAAATATTCGTGTGATGCGTGTGTCTGATGGCTCGCTCATGGACTCCGAGTCTCAGAAGATTCTCTCCGATATTGCGACAGAAACAGGATTCCAGGTGTGGGTTGAGCTGGTTGATGAAACCGGTGAACATGGCATTGTGATTGAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCACTAGATCAAAGGACAAAGAAAATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCCCTAATGGTGTAGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCAGTCGAACCAGTGGGTAGATGGTGACGCGGTTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTCACCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //