Array 1 18710-19104 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBAM01000025.1 Streptomyces klenkii strain KCTC 29202 contig0025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18710 29 100.0 32 ............................. GTGGTTGCCCTTGCCCGCCGTGGAGGTGTCCT 18771 29 96.6 32 ............................A CGGTCGCTCATCGCATTCATGCGGTCGAAACG 18832 29 100.0 32 ............................. AACGGAGCGTAGTCTCACCTGCACACAAGTTA 18893 29 100.0 32 ............................. GTTTGAGTCAGTCATGGTCCTTGACCTCGGCA 18954 29 96.6 32 ...............A............. CGCCGGCCCGCACCGAATCCGCGGCCGGCACC 19015 29 100.0 32 ............................. ACCCGAGCCACCGGCCAATGGCGGGGCAAGGC 19076 29 82.8 0 A.......G...T............C.T. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 CTGCTCCCCGCGCCTGCGGGGATGGTCCC # Left flank : CGGGTCCGGAGCCACGCTCAGCGCGGTCAACCGAGCAGCCCGGAGCGGCTGGTCGAGCCGGACCGGCACCGCTACGGCCGACAGCCCGGCCGCCCTCGTAGCCGCCCCGCTGATGCCGCTTCTTGAGCTGAGGATGACGACTACGGGTACTTGGCAAGCCTCGCCGCCCGGCTTGAGGCATGGCCGCTTCTTGAACGGCTCGTTCATAAGGCCGAGGAGAGGAGCAACTCCGACGTTCGTGAGGTTGCGCGTCACTACAACGAATCCTACGGACCTATGTGGACAACACGGCCGAGGCTGGCCAGTTCGAACCTGTGATGTTTCGGTGCCGCCTTGTTCACGACAAGATGGGCGAGGGACCCCCGAGCCGCCGTCAGTACCCTGTTGAGGGAGTGAGGGTGAGCGAATTATCCCGAGAGTCTGATAGATGTGGTCTGTCTGATTCTTTGCGAGTGAGTAAAAACCGGCCTGGGCTCTGGTAAAAGCCCTGGTCATCGAGC # Right flank : CTATCCGGCGAACAGGGCCAGTTGATGGCAGAGTTGCTGGGCGTGAGCGCACAGGAGGAAACGGGCCCGTACGGCGATGACGGTCCGTCCCTCACGGCGGGCGGGCCGTCAGGTGAGGACACCGACGCGGGCGGCGAGAGCGCGTAGCTCGGTGGTCGTCCGCCCCGAGACCAGCAGTCCGGAGACCAGCGACTTCACCGCCGGGCGGGCGTGGGTCTCCTCCGGGGCGTGGTGTTCGGCGGCCAGGAGTGCGCGGATGCAGTCGTCCCGGCGGCCCGAGCGGGCGAAGGCGGTGGCGATGTCGGTGTAGTAGCGGGCCCGCCGCTCGATGCTCGGCAGATTCCCGGGCGCCACCGCCCTGGCCGCGGTGAGGGCGGCGGAGGGGTCGCCGGCGGAGTTCTCCGCGGAGACCAGGTGGAGCTGGACAGTGGCGGGGCTGAACCCGCCGCCGTGGTTCCGCAACACGGCGGCCGGGCCGAGTTCCCGGGCGATGGCAGCGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24346-25490 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBAM01000025.1 Streptomyces klenkii strain KCTC 29202 contig0025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================== ================== 24346 29 96.6 32 ............................C CAGCGCCCTGCGTGCGGACGGCCCTTGCGGTC 24407 29 100.0 32 ............................. GCGTCGAAGGCGTCCGCCGGTGCGCCGGGGAG 24468 29 100.0 31 ............................. CCTTCTTCGTCATCGGCGGTCGCAGCCGGCT 24528 29 75.9 32 ........T.T...C.T.......TT..T GGCGAGACCGGCACGCTGCCCAACCAGACCAG 24589 29 86.2 31 G.........T...C.............A CCTCCCACGCGCTCGGCGAGCACGAGCTGAC T [24613] 24650 29 89.7 31 ........T.T.................A TGAGCGGCTTAGGATCGCCACGCAGGTCTTC T [24675] 24711 29 93.1 32 G............T............... GCGACAGCAAGCCGCTGCCTTCCTTGCCAGGC T [24735] 24773 29 79.3 31 ..........T..AC.T....G......A ACGAGGAACGCACGCTGCCGGGCGTGTCCTT G [24796] 24834 28 79.3 115 ...T.......A.GC..-..........C CCCGCCCCGCGCCGCCGGCTCTTCTCCGCTGGCAGCCCGTCAAGGCCGCGCTGGCCATGGCCCTCGCGGGCTGTGCGATCGGCAAGGTCGTGGTGGCCGCCGGAGCGGGCGTGCG AT [24859] 24979 28 82.8 32 .............GC.-........A..T TCGTCGTGCGCTTCCGGCGAACCGAGGCCGTC 25039 28 82.8 32 ...T......T...C..-..........C GACGGCAAGCCCGTGCAGGACGGTGAGAGCGT 25099 29 79.3 31 ..........TA.GC.T...........C AGGCCCGGCCGGGTTCGGGCATACACAGGCG G [25122] 25160 29 82.8 31 .....T....T.TG..............T GCGGAACCGGGTACCGAGACGAGGCGCCCGG A [25185] 25221 29 82.8 27 ........G..T.GC.......C...... CCTCGGGACCCATCCGAGCCCCACATG A [25246] 25278 29 93.1 32 ..............C.............C GGTGTCGCTCTGAGCCATGGAGGAGTCCTTGC 25339 29 79.3 31 ...T....T...T.C.........T...A TGCCGCGGGGCTCTTCCCGGTACGCCTCTTC A [25363] 25400 29 82.8 32 .......TT.T.....T...........C GCGCGCTCCATTGCGGATGCGCAGGCGAAGCT T [25425] 25462 29 72.4 0 G.....TT..T.T...T........T..T | ========== ====== ====== ====== ============================= =================================================================================================================== ================== 18 29 85.5 36 CTGCTCCCCGCGCCTGCGGGGATGGCCCG # Left flank : TGAGGGCGGCTGCGGCTGTGTGTGCGGCGGAGAGTGCGCACGGCCCGTACATTGCCGCCGGATGCATGGTGGCCAGTGCCCGGTAGCGGTCACCGAAGTTCCAGTGCCACGACTCGGTCGGGTAGTTCACCAGCGCGCCGACGGTCAGGGCCATGGACAGAATGTTCCGGTTGGCGTGGGCCGTGGAACTGATGTTGGTCGCCGCGGTGTAGCAGGCGCCGTTGCTCTCCTCTGGGGTCGCGTTCGTGGCAGTGTCGAGGTCGAGTTCCCGGCCGTCGACATCGGCAAGGTGAGATCGCCAGCGGCTCCGGCGGTGTGCGGGGAGGTCTCAGTGTCTGGGTCCCGGACGCTGGTGTGATCGATATTCTGGTGTGAGCGTGTCGTTGAGGGAGTGGGGGGTGAGTGAGTCGTTTCGGGAGTCTGATAGGTGTGGTTTGTCTGATTCTTTGCAAGTGGGTAAAAACAGGCTTGGGCTCTGCTAAATGCCCTGGTCGTCGAGT # Right flank : TACCGTGTCGGCGAGTTCGTTGCCGAGGCGGAAGTGCTCCTTGTGCTCGCGGGAGTGAACCCTGCTGAGCAGGGCGGGACTTGGACGCCGGTGGCTGCTCTTCGCGTGTGCGGGGGCCGGTCTTCTTGATAGGGGGCAGGGTGGGCTTGACTGTTCTTCGTGTCTTTGGGTTCTTGCGTGTGTGGGGTGTGGGCTTTTGGTGTTGATTGTCGGGAAGAAGGAGGGGGCGGTTTCTTTTGCGTGCGGGTGTTCTGGTGGTGGGGGCTGGTCGGGGGTGTTTTTGGTCGGGGCCGGGGTGTAGGTGGCTGTTTCGGGGTTGAATGGGACCGCGCCTCGTAGATCGCCTGCTTCCCGCACGTGTGGGGATGGGCCCATCACGCACAACGGGCGATCGGAGACCCGGGCTGCTCCCCGCGCCCGCAGGGATGGTCCCGACTGCGACGCCGCCGCGCCCATGGCCTACGTCTGCTCCCCGCGCCTGCGGGGATGGCCCCTGGATG # Questionable array : NO Score: 4.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.28, 5:0, 6:0.25, 7:-0.42, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [13-36] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 225845-225694 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBAM01000006.1 Streptomyces klenkii strain KCTC 29202 contig0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 225844 29 100.0 32 ............................. TCTCACGAAGAGGCAGGTCCGCCATGGAGCGT 225783 29 100.0 32 ............................. TGGCGGAGGAAGAGAACCTTGCCGGAGGTGGG 225722 29 96.6 0 .........................T... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 CTGCTCCCCGCGCCCGCGGGGATGACCCC # Left flank : CGGGGCCCCGGTGCTCGTCCCCGACGCCGACGGCAGGCTCGAAGGCTTCGCCCTGTCCCCCGGCGGCTCCCCGCTCAGCCACCGCCGGCAGGTCACCTCCGGCGGCTGGGATGCCGCTGACGACTTCGGCGAGCCCGGCGTCCGGCTCGCCGCCCCGCCGACAGCTGTGGCCGACGCCACCGGACGGATCCACGTCTTCGCCGTCACCACCGAAGGCCGGCTGCGCACCCGTGTCCAGGCCCGGCCCGGCGGCTGGCTCCCATGGAGCGCATTCGGCGACCGCCCGGTCGCGCCCGTCCCGTCGGGCAGCCCCGTGTACTGGACCTGAACGCGTGGTGCAGTGCCGCGGGCGCGCATTGCGGCCGACAGCATGCCGCCGGGGAGGCGCGGCGGGCTGTGACGTGCTGCATCCTCTTATCTGCTGGATGCGTGCTTTGCCGGAATCTCGGAAAGTAGTCAGAAAACGGGGTGAGCGTGGAAGGATGCCCAGGTCACGAACT # Right flank : CTGGCGCGATGCTGAGCCTGCCCGTCCGTTGAGGAGGACCGCTCGGACCTGCTGGCCTCCTGCCACCGGGAGTCGCTGCGGGTGGCGGATGAGCTGGGTGCGCGGACAGCGGCGTTCCCGGCGATCTCGACGGGCGTCTACCGCCGGCCGGTGGAGGACGCGGCGGCAGGCGGAAACGAACGTGGAGGAGGTCCGCTTCGTCCTCTTCGACGAGCGGGCGTACGAGGCGTTCGCCGCGCAGGCGGATCTACCGCTCTGCTGACGACGGCGGTGACGCGTCGGTGGCCCGGGCCGTGGCGAGGGCCGCAAGCGCCAGTACCGCGGCCCCGGCTAGGAAAGGCGTGCGTAGTCCGGCCAGTTGGGCCAGTACGCCGCCCGTGGCCGCGCCGAGGGCGCCGGCGCCGTTGCTGACGAGTTGGTACGACATGCTGACCCGGCCCAGCAGTTCCGCGGGCACGAGCTGCTGGCGCAGCGTCACCGCCGTGATCTCCCAGATCAGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //