Array 1 77453-82487 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSOG01000001.1 Bifidobacterium pseudocatenulatum strain TM10-1 TM10-1.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 77453 33 100.0 33 ................................. GGTATTGGGGAATGAGTCGTGCGTAGCGCGGCT 77519 33 100.0 33 ................................. GCAGATCAAAGGCTTATCAGCCGGACCCTTGAC 77585 33 100.0 34 ................................. TACCAGCAATACGGATTATGCGCATTCCTCTGAT 77652 33 100.0 35 ................................. GAGTTGGGTGAGGATTTGGTCGATCATGCGCATTG 77720 33 100.0 35 ................................. CTCCTATTTATTGTTTATTATTCATGTGTTTTCAT 77788 33 100.0 34 ................................. ACTTCCGCACTCGGATTAAGCACCGCAAACGCCA 77855 33 100.0 34 ................................. CAACGGGTCGCAGGGCATGAAACGCAATGACATC 77922 33 100.0 33 ................................. CATGGCTGGGTTACGGAATCCCACAAAGCCCCC 77988 33 100.0 34 ................................. TCGTATGAGGTTTGAGCGGTCTACTAATGACATG 78055 33 100.0 36 ................................. CAGCATGACGTTGCGTTCGGCAGCTGTTATGTGACG 78124 33 100.0 37 ................................. ACGTTCTGGCAGATGCAGGAAGCGTATGTGCGGGGCA 78194 33 100.0 36 ................................. AGTCCATACACGCTACGATTGTCGAGCAAAAAAGGG 78263 33 100.0 35 ................................. AGGGCGAAAAGACGGTTAAGGGCGGCGCACATATC 78331 33 100.0 35 ................................. CGGAAGACGCGCTGCTGACGGCATTTGACGGCGAA 78399 33 100.0 33 ................................. CAGCCGATCGGCATCGAATACAAGGTCGAGGGC 78465 33 100.0 34 ................................. ACGGCGGCGTGGCGTCCACCTTCGGTCATGACGC 78532 33 100.0 33 ................................. TTTGGGGCTGGGTTTACGAAACCGTGGGCTACT 78598 33 100.0 32 ................................. GACGTGCCCAATCGGTTTTGCTCACTGGCGTA 78663 33 100.0 33 ................................. CAGCCGGATAGGATACACCCGTCCGTATTGGCG 78729 33 100.0 34 ................................. CGCGCTAATCGTGTTGAGAGCTGATTGGAGGTAA 78796 33 100.0 33 ................................. AGCTGGGGTTTGCAATGCCATTGCTCTGTGTGC 78862 33 100.0 35 ................................. ATCACTCAATACGTTTGTCATTTGCAAAAAGTCAG 78930 33 100.0 34 ................................. TGTCCTGCCAACGGTCAACGGTGTTGTAAAACTC 78997 33 100.0 35 ................................. TCCGCCCAGCCAGGAGCTCGGACGGAGAAATTGAC 79065 33 100.0 36 ................................. GGTCGAACGTGGCGCGAACGCCTACACGCTGCCGAA 79134 33 100.0 33 ................................. AACCATGCTTCGAACGAAGCGTCATCCTGCTGC 79200 33 100.0 35 ................................. GCCGTGTAGGTGAGCCGACGGTCGATCAGGATGAC 79268 33 100.0 33 ................................. TTTGATTCGAGGCCGGTGAAGCCGATGGTCCAG 79334 33 100.0 33 ................................. AGATTGCCCCACATGGAGCCTAATACGCTTTGA 79400 33 100.0 34 ................................. TCCTCCTGCATGAGCGACACCACGTCATACGACG 79467 33 100.0 33 ................................. AAGCAACGCCATCAACGACCACCGCCGAACATC 79533 33 100.0 33 ................................. TTCCCATGCTTCAAATTATAGCTAATTGCGTAG 79599 33 100.0 34 ................................. ATTTCCGGCCTCCAGTATGGCGATAGTGTGACCA 79666 33 100.0 33 ................................. TTGAAGAGCTTGAGCACGAGCGGAACGCCAATG 79732 33 100.0 34 ................................. ATGTACTGATTGATGCGTAATGATTGTCGCATTT 79799 33 100.0 32 ................................. GAAAGTGCTTGCGAATTAGATGAAACGCTATT 79864 33 100.0 34 ................................. GTTCGCGGTCTGCTGGATAAGGCGCAAGAGGTTC 79931 33 100.0 36 ................................. TTCGGGGGTGCCGGTGGATGGGAACATGCAGCCGAG 80000 33 100.0 37 ................................. GTGCGTGACCAGCTTTCCAGCCTCGGGGCATCGCTTG 80070 33 100.0 32 ................................. CGCGCAGGGCGTCACCACCTCCGCCTACTTGG 80135 33 100.0 36 ................................. TACGGCAAGGCCTTAATCGAACGTTGGAACACCGCA 80204 33 100.0 33 ................................. CTCGTCCTTAACCGTCAGGAGATCGAGCAGGCG 80270 33 100.0 33 ................................. ACCGAAGCGGAGATCAAGGCGCGGCGAGCCACG 80336 33 100.0 35 ................................. GCGATGATACCGGCGTTGCGCAGGCTGGCCAGGTC 80404 33 100.0 34 ................................. GCAAGGGCAATGTTCAGCGCAAGAACAATGCCGT 80471 33 100.0 34 ................................. TTGGAGGTGAGCATCGAGTTGAAATAGGTCTTTA 80538 33 100.0 36 ................................. GCCATCGTTGGTGCGAATATAGAATTCGTCGCTGAT 80607 33 100.0 35 ................................. AATCTTGCTAATGGGTTGATTGGCGTCATGGTGCG 80675 33 100.0 32 ................................. CACACGCATACTGCCAAGCATGGAGACAGCGT 80740 33 100.0 34 ................................. CGCGCCATCAACACGGAATACTCGCCGAGCACCA 80807 33 100.0 35 ................................. ACCCAGCCGGGCGCAGTGCATCGCGGCGAGGTCGA 80875 33 100.0 32 ................................. ATTGCGGCGAACGTTCTGCACGCTCTCCCGTG 80940 33 100.0 33 ................................. GGGGAATAATGGTTACATTATTGTTGCTTGGTG 81006 33 100.0 34 ................................. ATCGACGAATGGGGGGAACTGAAGCAGAAGGCGA 81073 33 100.0 35 ................................. GCCGTACGGTCGAGGCCAATGTCAGGGCTTCGCGT 81141 33 100.0 34 ................................. AAGCGGGATTTCTGTGATCTCACCGAGGAACGGG 81208 33 100.0 14 ................................. GCCTCCAGGTCCTG Deletion [81255] 81255 33 66.7 33 .AA..CAGAGA.GC.A................. GACGCGGGCTGGGCCACCAAGGCCGACATCGAC C [81270] 81322 33 100.0 33 ................................. GTATGCTGCGGGTCCTCGGCCTTCAACGCGCCG 81388 33 97.0 34 ...............T................. GGCTTTGCGTGCGGCAGCTGCGCGGTGTGCCGCG 81455 33 100.0 32 ................................. TCACCAATAATCATCAACCATGTGGCGCATGT 81520 33 100.0 33 ................................. ATCGAGGTGTGCCGTGAGCTCTCGCATGCCGCT 81586 33 100.0 33 ................................. GAACTCAGGCCGCAGTACGACGGCCACAAGTCC 81652 33 100.0 33 ................................. TTCGAGACAATAGTGAGGGGTATCAGCGCTCAA 81718 33 100.0 33 ................................. GCGCAATCTCCAGCACGCACGTCTCATACTTGC 81784 33 100.0 35 ................................. CAGCTTCAGCAGTCGAGCCTGAGCCAAGTCACGCT 81852 33 100.0 36 ................................. GGCGGAACGTGGGATCGAATCTCGCAAGGCCGATTC 81921 33 100.0 36 ................................. TGCGCTGCGGTCAGACTGCGGAACTGCTTGAGTCGT 81990 33 100.0 32 ................................. GTGCTTGACCTCGACCCATTGCAGCAGCTCGA 82055 33 100.0 35 ................................. GAAGACGGGCCGTATGCCTCCGACTCCCGCAACAT 82123 33 100.0 34 ................................. ACGATAGCCATGGCGCTGCCCAGGATCATCGTCG 82190 33 97.0 33 .............................G... AAGGCCGCGTCCGTGCAGGTGCAGGCAGCTCAG 82256 33 100.0 33 ................................. ACGCAGGTCAGCCCGATCCTCGACCGCATCCCC 82322 33 97.0 33 ....T............................ AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 82388 33 100.0 34 ................................. GATACGATTAAGATGATTTTCGAGCGTCGTATCA 82455 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 76 33 99.4 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAACGGACAAAAATGTCCAGCTGCACT # Right flank : TCGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //