Array 1 1053241-1052111 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072361.1 Prevotella melaninogenica strain F0054 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1053240 37 100.0 37 ..................................... GCAGGTCCATGGAGATATTCATACTGTCCGTGCATCA 1053166 37 100.0 37 ..................................... ATCATAATTAATGATTTTAGTTATGTTGATACTATTC 1053092 37 100.0 36 ..................................... ATAACATTCTTCTTTTCCATAATTGTAAGTAATTTA 1053019 37 100.0 37 ..................................... GTCTTAGAACATATTGTTTGAAGTACTTCATAATTGT 1052945 37 100.0 36 ..................................... GCGTGGTAGAGTCCTTTTTCTTTTGCCCAAGCTATT 1052872 37 100.0 36 ..................................... CATCTCTAACTCACGATTCATTACATCTGCAATCTG 1052799 37 100.0 36 ..................................... TGCATCCTTGCAGATATAACCTGTAACTGTGAAATT 1052726 37 100.0 37 ..................................... GTTCTTGCCGTCCTTGGTGTAGCTCTCTGGCTTGACT 1052652 37 100.0 35 ..................................... GTTTAATCAGTGTTACGAACATCAAAAAAAAGGGG 1052580 37 97.3 38 T.................................... TACTCACCTCCAGCCATACAAGCTATATCATGACCAGA 1052505 37 100.0 37 ..................................... TTGTAGCGTCCTTTTGACACGGCTGTGTCGAAATTAG 1052431 37 100.0 33 ..................................... TAAATCAGACTGAAGTGTGTTAATATTAACAGA 1052361 36 97.3 36 .......................-............. ATCTTTGATTCCTAATAGCTCCAAAACGACATTCTC 1052289 37 100.0 34 ..................................... CGAGCGATGGCTGCCTTTTCGAAATTCTTAACAT 1052218 37 100.0 34 ..................................... TGTAGAATATTAAGTTTAGCACCTGCAAGAATCA 1052147 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 16 37 99.7 36 CTCCGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Left flank : ACTAATATGCTATTCTTCGTTATGTATGATATTGAAAGCGACAAGGTGCGTTATCATATTGCAAAATATTTGGAACGTAAAGGATGTATTCGCATACAACGATCCATCTTTCTTGCCGACCTCGACAAGACCGTTTATGACCAAATCAAGAATGATCTTGCCGAAGTACAGTCATTATACGACAATCATGACAGCATCATCGTATGTCCCGTCTCCACTGATCAGTTGCAAGCTATGAAGATTATCGGTGAAGATCTCAATATAGATATTATCACTCATTCGCGTAATACATTGTTCTTTTAATAGGGTAAATAAGAAGTAATATTCCAGTAAGATTACCTCTCTTAAAGAATATTTAACGCATCGATCTTTGAAATTTTGAATAATTATTTGTACCTTTGCAGTCGCAAACAAAGTAGTTAATTTATGTTAACTAAAGCATTCTACCAAAAGTAAATACACTTCAAACAGCGATAAACAAAGAAATATAAGTCTTAGCT # Right flank : ATACCAGCCTGTCCATAAATCATCATCTTTATTGGGTTCTGTGTGTCCTATTACATAGGGAAACTTACTTCATCACTCTGCATTTCGAAAGAGCCCAAAAGTATCTATACCATTTAGCCGATTTCGTTTTACAGAATTACCCCAAACTTGATTTCCCGTCATTCCTGTCATTTGTAGTAGGTTATTAACTTACTATATTACAGCAAGATAAATTAAATGTTAAACGTGACAGCAAAACGGAAATAAAACTTTCTGTTGTTTTATGTAACAAATATCTTTCTTCTTTGGGAATACTTATTACCCGATAGTGTGGAAGAACTTTTTTATAATTAGCTTTTTGTGCACACAAGGATTAAGACAATTAAAATTATAAACTAAAAATTAAAACACCGAGAGTAATTTCCATTAAAACAAGGATTAAGACCTTGTTAAACACACGCCTTATAGCAACAACCTTGCCTCTAAGAGAACTTCCATTAAAACATAAAACAAGGATTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 357577-354463 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072362.1 Prevotella melaninogenica strain F0054 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 357576 47 100.0 29 ............................................... ATGTTCTAACTCTATTACTTGTGCTTTAG 357500 47 100.0 29 ............................................... TTACTATACCGCTACAAACTCATATATTT 357424 47 100.0 29 ............................................... AATATACGAGGCAATGAAGTATTCTGATA 357348 47 100.0 30 ............................................... TCTGTCTGTCTTGCTGTTACGTCAATGGTA 357271 47 100.0 30 ............................................... TGCCGTGAATAAGGTTATACATCTCTATCC 357194 47 100.0 29 ............................................... AGTGGTGGGATAACGAGGATTTTGTATTT 357118 47 100.0 30 ............................................... CGACCAGCAGGTCGCTGCACTTGTGCAGAT 357041 47 100.0 30 ............................................... GAAGAGACTTACGGAAACATTCACGAACCT 356964 47 100.0 30 ............................................... CCACTTCCTGAAAGCAAGATGAAAAGTCCT 356887 47 100.0 29 ............................................... TGCAAAAAGCAAACAGCTTGATGACGAGT 356811 47 100.0 29 ............................................... CATCTGCTGATAATTTCTGTAATGGTATT 356735 47 100.0 30 ............................................... CGACATGTGCGGAGGTCTTCACTCCGCCTA 356658 47 100.0 30 ............................................... CCGCCTGACTCAAGACCAGTGGCAACACGT 356581 47 100.0 30 ............................................... GACGGAACGCCAAACGGTTTCAACAACACA 356504 47 100.0 29 ............................................... ATGCGAGAAAAAGAGTAAACAGCTAACTT 356428 47 100.0 30 ............................................... TCAATATGTGAATACTTCCAATCGCAAGTA 356351 47 100.0 30 ............................................... TTTATTATTAATAACGCTACCAGCAATAGA 356274 47 100.0 29 ............................................... CAGCCTGTGAGTATGTATCATCCAATTTA 356198 47 100.0 30 ............................................... TGACAACTGGCATACCAACACGCACGGCAT 356121 47 100.0 30 ............................................... AAGCACTGGTTGTTGCTCTGTTTTTATGCC 356044 47 100.0 29 ............................................... TCAATCCTCCGACAACCTCATCAAATGCA 355968 47 100.0 31 ............................................... CAGTTGGCTCATACATTCTTTATGCCCTGTA 355890 47 100.0 30 ............................................... GATTCTACGCAAAGAAATATACCGCATTGG 355813 47 100.0 30 ............................................... TGCAATCCTCGCCACTTAAACTCTGGTATA 355736 47 100.0 30 ............................................... CACGTCTTTTCAAGTTCAAAGCGCATCTTA 355659 47 100.0 30 ............................................... CACGTCTTTTCAAGTTCAAAGCGCATCTTA 355582 47 100.0 29 ............................................... ATTATAACATTACCACGATTTACAACGTT 355506 47 100.0 30 ............................................... AAGTTTAAGAACAATGAAAACTATTGCAAG 355429 47 100.0 30 ............................................... TGACGGATTCCGACAAGCTATGCTTACAGC 355352 47 100.0 30 ............................................... TGTCGAATGAGATAGCAAGAGGTTTAAGTT 355275 47 100.0 29 ............................................... ACACCTTTGTTATTAAAAGCAGCAACAGC 355199 47 100.0 30 ............................................... ATAAGGGTTACCATGTGGAGCAGGGAACAT 355122 47 100.0 30 ............................................... CGTCGCCTTGTAACATTTTATCAAGCAACT 355045 47 100.0 29 ............................................... ATTTGTGCAGAGTATGGACCTAAAACCTT 354969 47 100.0 30 ............................................... GTTTGTGCGTAAGTATATTACACATACACA 354892 47 100.0 29 ............................................... CAAAATATAGAACGTATCAAAAAGAAAAT 354816 47 100.0 29 ............................................... TGGTAAAGAATGGATGCAATATCATGCTG 354740 47 100.0 30 ............................................... TGCTTTCTTATTAAATAGTATTCCACCCTT 354663 47 100.0 30 ............................................... CGCAACTCCATAATTACCACCAAAATCTAT 354586 47 100.0 30 ............................................... CTTTGTCTATTTGATCTTTAGGATATAATA 354509 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 41 47 100.0 30 GTTGTGAATTGCTTCAAAATGTGTATCTTTGCATTAGCATGTACAAC # Left flank : ACTCGCTTAAGACTCTCTCGGCAAAGCCAACACCAGTAACGACAGCACCTCCCGTTAGTGTTATGGGGCAAAATGTCTGGCACTATGCAAGTAACAAATCATGGATAGTAGGCTCTTTCGATGGACTATTCTATTGGGACCGAAAGAACAACGTAGTGCTTTACTACAACGATTCAATGGGGTCTACTCCTAACATACCAGGCACAGCTCCAGATGAACAGACAATCTCTGGCTACAGTTCTGACTTCACAAACAAGGAGTGTATAGCAACCTATTTTCAAGGTTCGTCCTTCGCCACACAACCAGAAGAATTGAAAGATAAGCCCATGTCGCTTTGGAGTCTTGCTTTAGAGGTACACACGGGTAGAATCTATGCAGGTGCATTAGGCTCCTTCCTCTTCATTTTCATCGTTGGCATCCTCATTATCTTCACCCTCGTGTCTGGTAAGAAGGCATAAAAGTCGTACAACCATTTGCTATATGATTCTAACCGCAAGCAC # Right flank : GCCAAAGCCATATCTACCTATATTACAGCAAGTAATAAGGCTTTTGTACAAATAAAAAAATGCAAAACAAAAGAGTCCTATCACAATGATGGGACTCTTTTTTAGAATAATTCTAGTTGCTGTCCTGGGGCATTAGGTTCTTGAGACTGAGTTCCACGAAAAAGTTCTATCTCACCAAATTGTTTATCAGTGATGACCATAATACAGACATTACCAGAATTAGGCATAAAAGACTTTACTCGTTTCACATGAACTTCTGCATTTTCTCTGCTTGCGCAATGACGAACATAGATTGATAATTGAAACATAGTAAAACCATCTTTCATCAAATCTTTTCGGAAAATAGTATAAGCACGCTTCTCCTTGTTTGTATTCGTTGGAAGATCGAAAAAGACCATCACCCACATAACCCTATACTCACTAAGACGCTGCATCAAATAAAAGAAGGATAAGAGATTTCACGAGCATCTCCATTGTAACACTTTGCAAGACTTGCTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAATGTGTATCTTTGCATTAGCATGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 1078544-1077489 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072362.1 Prevotella melaninogenica strain F0054 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1078543 37 100.0 35 ..................................... CCTTGAAGGTTTTTGGATCTCCGACCCGAACTTTT 1078471 37 100.0 35 ..................................... CCTTGAAGGTTTTTGGATCTCCGACCCGAACTTTT 1078399 37 100.0 34 ..................................... ACCAAAGTAGCTGCTGGTTTAATTTTACCAATCT 1078328 37 100.0 35 ..................................... CTGCCCATCTCAGACATTAACTCTCTTGCGTTATT 1078256 37 100.0 35 ..................................... CTCCATATAATCATTTTGCTGTTCAAGGGTCATAT 1078184 37 100.0 35 ..................................... GTGATACTTCTACTTGACCATGAATGTCATGTAAC 1078112 37 100.0 37 ..................................... ACATAAGTACACAAATCCGCACCATCCATTCCAGGGT 1078038 37 100.0 36 ..................................... CAAGTGTTCCCCAGGTCTTACCTAAGAATGCAAATT 1077965 37 100.0 36 ..................................... TTGAGCAATAGCAGCAGAACTAAAAGTATCAAACCA 1077892 37 100.0 39 ..................................... ATACATCAGGATTTTCTGCATTTATAGTACAAGGCTCTA 1077816 37 97.3 36 ............T........................ TATCCATTGCGCTGTCATAGACACGCACAGAGTAAA 1077743 37 100.0 35 ..................................... ACACACCATCATCGCCAACATTACGGTTTATCTCA 1077671 37 97.3 34 ...............T..................... TGATACTTAGGTGACTCAACATCATCAACAGTAA 1077600 37 94.6 38 ...............TT.................... AGTTGCCGACTTTCAGGGTATCGAAAGACTTAACCGTA 1077525 37 83.8 0 .............C.......A..........T.CCT | ========== ====== ====== ====== ===================================== ======================================= ================== 15 37 98.2 36 CTCCGAGAGTATCTTCCATTAGAACAAGGATTAAGAC # Left flank : CTACACTGATTCTTGAGATGGAAGACACGATAACGTGTGTGGGCTTTATGGGAGGCGATGCCGATGCTGAAGAAGTTGACAGGCTCGCTGAACACATTCGATGTCATCATGCAGGACTGAAAATAGGGTGGTATACAGGGCGCACAGCTATTTCTCCGCTCATCAATCAGCAACGCTTCGATTATATCAAAGTCGGACCTTATCTCCGCCACCTCGGTGGTTTAGATTCTCCTTGCACCAATCAGCGAATGTATCGTCGCTGTGCTGATGGCAGCTTTGAGGATATCACCTCCCGCTTCTGGAAGGCACAAGCTGGCGAGAGTTTATAAAAATCCATCTTTGATTAAGATAATTTAAGTCTGCGCTCTTTGACATTCTGTAAAAAATGACTACCTTTGCACTCGCTTTCAAGATGGTTAATTTGTGTTAACAAAAGCTAAGTTGGTAGGTCTTATTATTATCAAAACCTCTGAAATAAAGGATTCGTAGGTTTTGCTCTC # Right flank : CAGAGCACTTTGTGTCCGTCATTAAGGGTGCGTACTTCGAGGATGGCAAATGATTTTTATAAAGGGAGATTTTACCTTTCAAGTAATTGTAAAGTAATCAATCTTCTTTTTATTCATTTAGAGAGTATTTCTCTGTGGTAACATGATGGGGGAGGGTAGAGATGGGTGGTGAATGCTATGTGCCTATCATCTCTGATGTTGTTAAGTTTACTCCTCTTAAAAAATGGTTTAAGGGGGGAATAAGATGGGAAGTATAGGAAAAGCCGACTGTTAATCAAACCAAGATTATTAAATAAGCAAAATATCTTGGTGAGAAGCACGATTTAGTTTTTTAGGTGGGTTCTATTAATTAGCTCTGTTCGAGAATAAAACGAGAGTGAGCGAAGAAGTTATGTAGACATAACACCTGAGTGAACTGGCAATTTGAGCCAAATCCACCTTAAGATTAATAAATGCAAATACTACGGTTCGGAACTTATATATGATGATATAAGGTCTAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCGAGAGTATCTTCCATTAGAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //