Array 1 46263-45135 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZC01000010.1 Salmonella enterica subsp. enterica serovar Kintambo strain 07-0920 NODE_10_length_138197_cov_3.06649, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46262 29 100.0 32 ............................. AATCCCTCATTCCGTATCGCGCCAGCGTGTCG 46201 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 46140 29 100.0 32 ............................. TGAGAGAGTTATTGAAAAAAGATGGCTATTTC 46079 29 100.0 32 ............................. GCCGCGAGTACGGTTTTAAAGGTGAGTTTGAA 46018 29 100.0 32 ............................. GTACGTGACGCCTCATGAACTTCGCCCTGATC 45957 29 100.0 32 ............................. AATTGCCTTCCATGCGGCGGGCTCGCTATCAG 45896 29 100.0 32 ............................. GTCTGCCTAATATCAAAATGGAGGTATGGGGT 45835 29 100.0 32 ............................. CTGATGAGTTACGGCCCATTAAACGGGGGGCA 45774 29 100.0 32 ............................. AAGTAATAATAGAAGCAGGAGCAAGCACAAAC 45713 29 100.0 32 ............................. AGAGCGAGCACGTCCGCCGTAAAATTGCCATG 45652 29 100.0 32 ............................. AATATATGGCGCTCACGCGCATGAGCATTCTC 45591 29 100.0 32 ............................. GCGGTTTTTCTAATGCTGGCGTGGTATTAGCT 45530 29 100.0 32 ............................. GAACGACAATAAAGCATGTGGCAATTGCGCCG 45469 29 100.0 32 ............................. CAGGGCAAATACATCCGCCGCTGACCACTGGT 45408 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 45347 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 45286 29 100.0 32 ............................. TCACGAGGGCCCCCTTATTGGGTCGGGCAGGT 45225 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 45164 29 96.6 0 ............T................ | A [45137] ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGATTTATTAATTCAGCGGGCCGGTCGACTACAGCGTCATATTCGCGATCGTAACGGTCTGGTGAAAAAGAGTGGGCAGGATGAGCGAGAGACGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57122-56301 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZC01000010.1 Salmonella enterica subsp. enterica serovar Kintambo strain 07-0920 NODE_10_length_138197_cov_3.06649, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57121 29 100.0 32 ............................. ACCGGGCAAAGCCTGTTCTACCTCGGCGAAAC 57060 29 100.0 32 ............................. CAAAACCTGGGGGACGAGGAGCTGTCCATTTG 56999 29 96.6 32 .............T............... GTTAATTTGTTTTTGTGGGGAATTATTGTTGG 56938 29 96.6 32 .............T............... CCTGAGGATATATTCACCTTCCTGCATTTCAT 56877 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 56816 29 96.6 32 .............T............... GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 56755 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 56694 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 56633 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 56572 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 56511 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 56450 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 56389 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 56328 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //