Array 1 446567-448290 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029696.1 Akkermansia muciniphila strain EB-AMDK-6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 446567 31 100.0 34 ............................... ATCGTATGCGGGCAGGCCCATTTCGCCGCAAAAG 446632 31 100.0 34 ............................... TAAAAAATAATGATAAATTGAATGCATCAAAGGG 446697 31 100.0 34 ............................... CCGGCGCGGGGGCCAACATGTCTTGTCCGCTTGT 446762 31 100.0 34 ............................... CGGACGGCTCTCTATTCTGAAAATCAATCTCCTA 446827 31 100.0 33 ............................... TTTATCAACTCTAATAAGTTTTTTGTTCATGCG 446891 31 100.0 33 ............................... AGTTTCCATGATTGTTTCAACTTCTCCGGTGCG 446955 31 100.0 34 ............................... CACATGGAACATTTACAATTTAAATCCAAAAGAT 447020 31 100.0 34 ............................... TTTATTGCCTGCGCACAGAAGTGTCCATGTCCAG 447085 31 100.0 35 ............................... TGTTTGGTTGATTGTTTTGTTCACCGCCCCTTATT 447151 31 100.0 34 ............................... AAGGTTGTATGACAAATTACAAATAATTAACATG 447216 31 100.0 36 ............................... CTGTTCCGCAATCAGGGCAATGTCTTTTTGCTGACG 447283 31 100.0 35 ............................... CGAAAGATATAGCGGCGGCCTTTATGCTGACTCCC 447349 31 100.0 33 ............................... CCTACCAGATGGCCCGCATAGGCATTTCCGCGG 447413 31 100.0 34 ............................... CCTTTGGAGTGCGTTCTTAACCCGTTTTTTAGCG 447478 31 100.0 34 ............................... TGCTTGCCCATGCCCGCTTCCTGGAATCGAAATT 447543 31 100.0 34 ............................... CGGCGATAAGGTTAATGGTTGCGACTACATGGGG 447608 31 100.0 34 ............................... AGTTTGTCTTTATTCATAGTCTATTGTCTTTCTA 447673 31 100.0 35 ............................... GTTTACCCCGGGTCCGGTCGGGCAGGGGTGGCAAA 447739 31 100.0 34 ............................... TGAATGCTACGTCCTGCCAATTCTGGGAGATGAC 447804 31 100.0 34 ............................... ATGCCCCCCTCCTTTCCACGATTTGAATCCTGCG 447869 31 100.0 34 ............................... AATAGATAAAAACACTTATAACCGTATCGTGTTG 447934 31 100.0 33 ............................... AAACGGTGATGGTTCTCTCAAGGCTAGCAACAA 447998 31 100.0 35 ............................... ACACCGTCTTGTGCAAGTCCATGACGGCGGTATGG 448064 31 100.0 34 ............................... AAGCTCGCTTTTAATGCGGTTCCCCTGCTTTTTC 448129 31 100.0 35 ............................... GAGGCAGAAAAGCCAATGCGCACCCATGTTGACGG 448195 31 100.0 34 ............................... AAAAATGATATAAAAAATATACTAAGGCCCTAAA 448260 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 27 31 100.0 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGTTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCGTTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTCCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAGCGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : CATTCCCGCCTACTTCTACGTCATCCGCTACGAGCGTCGCTGAGGAATGACAGGAGAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAAACACGGGAGTTAAGCAGGAACAGGCCAGGCACGAGCTATCTTATAAAAGTCGGAGCTAAAAAGAGGGCAGATGACAGGTATCTGATATAAGTACACAAGCTATGCAGGGATGTTGCACAAGATCTGCAAAGGGTAGGTGATAGAGAAACGACAAGGTAAAAAATCATGATAGGATGTCCCGCATGTGTACACCTGCATATTGCATTCCCTTGTATGGCTCCATGACTGTTATCTCGCCCGAAGACCGAAGGAAAAAGAATCCGCAAATTTATCATCTCCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAAAGAAGTAAGACGACATGCTGGGTGCGGGATGGTCGCACCCTCACGGGTGCGTGAATTGAAGTTTTATGTATGTTTGACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 940304-936258 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029696.1 Akkermansia muciniphila strain EB-AMDK-6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 940303 33 100.0 33 ................................. TTGCGATATGAGGCTACCCGGCCAGTTGCCTAT 940237 33 100.0 34 ................................. TTGGCATGGTCGTCGTAAATGCTCATAATCTTAT 940170 33 100.0 34 ................................. AAGTAACGGAAATCACTTCCGAAGGCCGTTCCAT 940103 33 100.0 34 ................................. CGCTGATACCATTTCCAATTCCCGGCCGGTTGCG 940036 33 100.0 34 ................................. TGTTTCTACAAGTTAGATACATTTTAATTATATA 939969 33 100.0 34 ................................. CTTTTTAGGGACTAGGTATAAAAAGTTTCCCCCT 939902 33 100.0 33 ................................. ACGGGCCTTGCTAACCACTTCCGGCAATTGCAC 939836 33 100.0 34 ................................. ATAATAGTCCGGGGAATGTACGTCTACCGCACCC 939769 33 100.0 34 ................................. GGCAAACAGGACAAGGGACAGGACGCCGGAACCG 939702 33 100.0 34 ................................. TGTCACCTACGGCGCAGGACTGCCCGCCGCACAA 939635 33 100.0 34 ................................. AATATAGGCATATCGGCCTGCCCCCTCATAATAG 939568 33 100.0 34 ................................. CATGATTGTTTCTACCTCGCCGGACGGAAAAATG 939501 33 100.0 33 ................................. CCCGTGCCTGAAATAAATGTCTTCCGACATCGG 939435 33 100.0 34 ................................. TCCGGATGCTGGAAAGGCTGTTGGAGTTGGCCCC 939368 33 100.0 35 ................................. CGGATGCCACCGGGTGCCGATGACGAACACCCGCC 939300 33 100.0 35 ................................. CCTTGATTTTCTACTGGATTCTTTAAGCGATGACA 939232 33 100.0 34 ................................. TCGCGGAGACCGTATCAGATTCCCGGCCGGTTGC 939165 33 100.0 33 ................................. AGGGGGGCAGGGGGTTATACCCGGCTTACCAGC 939099 33 100.0 33 ................................. TGCGATACGAGGCTACCCGGCCAGTTGCCTATA 939033 33 100.0 34 ................................. ACCGGTGGAAAGGATTGCCCACACCGCCGTTACA 938966 33 100.0 34 ................................. ATTGTTTTGGTTCCTTTCTTTTAGTGTTTCTTTT 938899 33 100.0 34 ................................. TTTTAGTTTAGTTTAGTGTTTATTGTTTCGGGGG 938832 33 100.0 33 ................................. CCACATGGACGACCTTGCCGCCGCCGTAGACGG 938766 33 100.0 34 ................................. CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC 938699 33 100.0 34 ................................. CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC 938632 33 100.0 34 ................................. TTGTATAAAGTCCACCATCTTGACGGCACCTGCA 938565 33 100.0 34 ................................. ACAGGAACGCCCCCCCCTCCGGGAAGAAACCGGC 938498 33 100.0 34 ................................. CGCAAAAATGACGAGGGACAGAATGCCGGAGCCG 938431 33 100.0 33 ................................. GATTGTTCATGATTTAGTTTCCTTTCTTCTTTT 938365 33 100.0 33 ................................. CTTTCGGTTGTGTTCCCCGCCCCATAGTAGGGC 938299 33 100.0 34 ................................. AACCCCGTCTAAGTAGTCCACATCGCCTAAGCGG 938232 33 100.0 34 ................................. TATTGTTTATTGTTCCGGGGGTTGCCCCCGTTGA 938165 33 100.0 34 ................................. ATTTCCGCCGTCTACAGCGGTAGATAAATCCATC 938098 33 100.0 33 ................................. ATCGTACTTGGGCAGTCCCATATCTTCACAAAA 938032 33 100.0 34 ................................. AAAACGATTGTAGTTGATCTGCTCGAAGACGTTT 937965 33 100.0 34 ................................. AAGGCCAAAAGCCCATTTAGCGGTGTAGCCCATG 937898 33 100.0 34 ................................. TGCCCTGGGACCTTAAGCCCGCCCTCGCAGACCT 937831 33 100.0 33 ................................. TTAAAATATAGTGTTAAATTACATTCATCAAAG 937765 33 100.0 33 ................................. CACATGGAACATTTACAATTCCAAAAGAAGCCA 937699 33 100.0 34 ................................. TCGCCGAAACTGTTTCCGATTCCCGCCCTGTTGC 937632 33 100.0 34 ................................. CCGGTTCCCCGGACGATATTTTCCGGGGGAAAAG 937565 33 100.0 34 ................................. CCTCAAAAACGTCTCCATGTCTAAGGGGCCATAG 937498 33 100.0 34 ................................. TGTGGGGTCGGGGTCATCGGTGCCAAGGTCTCCA 937431 33 100.0 34 ................................. CACGTGGAACATTTACAAGTTGAATCCAAAAGAT 937364 33 100.0 34 ................................. CCCCGTATATTCATCATACATGGGCAATCCCATT 937297 33 97.0 34 ...................A............. CTTGAGCGGGAAGCCACCCGGCCAGTTGCCTATT 937230 33 100.0 34 ................................. CGTCAAAAATGTGTCGATATCGGCGGGGTCATAG 937163 33 100.0 34 ................................. TGGACCGCAAAGACGGTGCAATTAAGTACACCCC 937096 33 100.0 34 ................................. TATCAAGCTCTTGCGAGCCACAAGACCCCTACCG 937029 33 100.0 34 ................................. TGCGTACTCATGGCATGCGCCCGTGTACATGCTA 936962 33 100.0 34 ................................. ATGAAGGAACGTTTCCATGTCCGCAAGGTCATAG 936895 33 100.0 34 ................................. CGGGTGCAAGTACTTAAAGTGGTTGGCAAGGCCC 936828 33 100.0 34 ................................. CGTCAAAAACGTGTTGATATCTGCGAGATCATAG 936761 33 100.0 34 ................................. TGCGAACAGGACAAGGGATAAGATTCCGGAGCCG 936694 33 100.0 34 ................................. TTAGATGATAAAGAGAGCGGTGTACTCTTTTGTG 936627 33 100.0 34 ................................. TATTGTATTGTTTAGTGTTCCGGGGGGGTCATCC 936560 33 100.0 35 ................................. TCCAGCCCCCTCCAATCTCAATCCCTATCGGAATA 936492 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 936426 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 936359 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [936336] 936290 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 61 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //