Array 1 725251-726901 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEGX01000004.1 Serratia marcescens strain 4TM tig00000176, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 725251 28 100.0 32 ............................ TGTTCGGGAACAATGCTGCCGATCCGAATCGC 725311 28 100.0 32 ............................ TTTACAGCGGTGGCGATGCTTCAGCTGGCGAC 725371 28 100.0 33 ............................ ACGCATGCCCTCGACCTCACGCAGAACCATTTC 725432 28 100.0 32 ............................ TTCTCGAGCACCAGCTCGGCCAACGTGGCGCT 725492 28 100.0 32 ............................ ACTCACTGTCGGTGGTGACTGCCGTCGTGCCG 725552 28 100.0 33 ............................ TTTTACGGGTTTCACATGCATGTTTTTTTACTC 725613 28 100.0 32 ............................ AGGCCAAGGAGAACAAGAAGAACTCAGACGCG 725673 28 100.0 32 ............................ TCCATGAATCACTGTGCGGACGCCGTTCCAGC 725733 28 100.0 33 ............................ CTTAACCTGCTGTAGAGTGAATAGCGGCCGGGA 725794 28 100.0 32 ............................ AGTCATGAACTCCCATCTCATTCCTAAGCTGT 725854 28 100.0 32 ............................ TACATCCTTCCCGCCGGAACTCAGCTTGATGT 725914 28 100.0 32 ............................ TGGGTGATGGTAAGCAGCTTATCGACCGTGGC 725974 28 100.0 32 ............................ TTATCGGATCTATGGGCTATAGGAGGGGCTAT 726034 28 100.0 32 ............................ TGCGCCATCACCTCGGCGTACTGTTCCAGATC 726094 28 100.0 32 ............................ GCGAGCACCATCCCTATGTCTGGTCGGCAATC 726154 28 100.0 32 ............................ ATTCAGCAGGTAACCCATGAAATATTTCTTCA 726214 28 100.0 32 ............................ TCGCCACCAGCAAAGGACGGTTGAATGAGGCT 726274 28 100.0 32 ............................ TGTAAGAAGCGGGAGATATGCAACTGGTGATT 726334 28 100.0 32 ............................ TCAACCACCACCTGCGGTATCTGGTACCGGAT 726394 28 100.0 32 ............................ TTGCCGGTGCTGATGCGGCGCACGGGCGCACG 726454 28 100.0 32 ............................ AGGCAACGAGGTGTCGGTATTGATGAGGCTCA 726514 28 100.0 32 ............................ ATGCGCGGGTGATCTCGATGGCAACGTGTTCC 726574 28 100.0 32 ............................ TGATCCAGTTCTTCCAGTGCAGGCAACTCCAC 726634 28 100.0 32 ............................ GTTCGCGCAAACGGGAAATCGTGATGCAGCCT 726694 28 85.7 31 .........T.C.T........C..... TAGCTGGCGGGTAGTGATTTCGCCGGTATCG 726753 28 92.9 32 .............T............G. CTGGGCGGCGCGCATGCGTTGGTAGTAGATGA 726813 28 92.9 33 ..T..A...................... CCGACTGTGGCTACGCCTTGTCGTGACCACTCC 726874 28 82.1 0 ....................AA..T.GG | ========== ====== ====== ====== ============================ ================================= ================== 28 28 98.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCGGCCTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGAACTGCCGCTGGCCGGACACCGAAAGCGCATTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAACGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCTGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCACCTGTGGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCACCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : GAGAAAGTAATATGTATTTGGTAGATTCCGGCAGTGATCAATAAGTGGATGACTTTATTTTTCTGATTGATGAATATTGACTCGCTTGCAACGGATTTCCCAGGAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGACATACATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAGTTAAAAACAATACTGCACTCGAAACGAGCCAATTTGTATTACCTGCAATATTGTCGCGTTCTAGTGAATGGCGGCCGTGTCGAATATGTCACGGATGAAGGAAAACAGTCTTTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 735385-736913 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEGX01000004.1 Serratia marcescens strain 4TM tig00000176, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 735385 28 100.0 32 ............................ AAGAAAGGGGAAAGATGATGATCGCACCAATT 735445 28 100.0 32 ............................ TGATGGCTGAATGAAATATCGCCCGTGTAGCA 735505 28 100.0 32 ............................ ATTTGTATCGCTATCCGAATCAACTTTTCATC 735565 28 100.0 32 ............................ GCGTGGATCTCTACTGCGAATGGTCTGCTGAC 735625 28 100.0 32 ............................ CTGTTTGGTCTAGTTCCTGCAAACATCAAGCA 735685 28 100.0 32 ............................ TGTGGAAGTTGCCGGTAACGCCTTATGTGACG 735745 28 100.0 32 ............................ ATGGAAAAGGCGATAGCGAAACTCAACAAGGC 735805 28 100.0 32 ............................ AAGTCCTGATCGGCTACCGGCAGCAAACCCGA 735865 28 100.0 32 ............................ TCTGCGACGTTGGTGTGTGGAGGTAGCATTTT 735925 28 100.0 32 ............................ TGCAGAAGCAGACCGACCAGGCCAAGGAGAAC 735985 28 100.0 32 ............................ GTTGTCGGCGTCGAGAGCATCAACGCGCTCAA 736045 28 100.0 32 ............................ GCGAGCATGGCGTATACGCCGACCGTGAAGCC 736105 28 100.0 32 ............................ GCTAATCTGCGGAATGCATAACGGAGCACCAT 736165 28 100.0 32 ............................ ACTAGCAGCACCACCACTACAAATGAAAAAGC 736225 28 100.0 32 ............................ ATCCAAGAGCCAACCAGAAGCCTAGACCAGAA 736285 28 100.0 33 ............................ TACTACATTGCGCTGTTCAAATCGTTGGCTAAG 736346 28 100.0 32 ............................ AAAGAGCGCCTGGCTGCAAACGGTGTCGAGTT 736406 28 100.0 32 ............................ AGGAATGCGGCGCGGCTTCTCAAGGAAGTTCT 736466 28 100.0 32 ............................ GCTCAGAACCTTAACGACTTGCACGCCGCCGT 736526 28 100.0 32 ............................ GGTGGCATGGGGAATGCGCTACTGGAACAGCG 736586 28 100.0 32 ............................ ATAAACTCGTTGTCATGCTCGGCACCGTAAAC 736646 28 100.0 32 ............................ AATGGCAGTTACAGAGCGAAGCTCAGTACCTC 736706 28 92.9 33 ...........T.C.............. AATTTACGCAGCGGGTTGCCGACTTTGATTTTC 736767 28 92.9 32 ..G........T................ TGCAGCATGTTCAGCGGGCAGCGTGTCAGCAC 736827 28 96.4 32 ...........T................ CCGCGCTTCGATAGCGGCAAGTGTGGCACCAC 736887 27 78.6 0 T..........T.C......-..T...T | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGCGCTAACGGCATTGGAGGGATTCGGCTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCCCATCCAGGCCGTACCTGCTGAGACGGCGTTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTTGAGCGTATACGCCGCCGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAAGCTCGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACATTTTCGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAAACCAACGCCGGGTGTTTTTAGTTTTTATGGGTTGAGTGCGTCCGCTACGGTACCTTGGTTTTAACCCTTTTTTTTCGTTTAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGGTTTGTCTATTTTTCTTTAATAATCAGTTTGTTATAGGCTGTTCTGTTCA # Right flank : TAGGGGGGATAAAAATTTACCGACAGGTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAATGCCAGCGTCAGTTCTCCTTTTCCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGAGGTGTCGGTCATCGTACGCCGCTTTGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGCTGCCTTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //