Array 1 4970-5237 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDD01000207.1 Acinetobacter baumannii strain ABBL023 contig-3000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4970 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 5030 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 5090 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 5150 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 5210 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : | # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2833-1964 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDD01000314.1 Acinetobacter baumannii strain ABBL023 contig-4000022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 2832 29 96.6 31 ............................T AAAAATAGTGTGTTAATTATTTATGATGAAA 2772 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 2712 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 2652 29 96.6 31 ............................T GCAGCTACTCGACATGTTGGTAGGGCAGATG 2592 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 2532 29 100.0 31 ............................. GATTGAGGCGATTTTTATCGCGGACATTGCC 2472 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 2412 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 2352 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 2292 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 2232 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 2172 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 2112 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 2052 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 1992 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 15 29 96.8 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : | # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-2308 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDD01000344.1 Acinetobacter baumannii strain ABBL023 contig-4000058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 61 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 121 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 181 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 241 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 301 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 361 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 421 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 481 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 541 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 601 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 661 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 721 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 781 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 841 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 901 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 961 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 1021 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 1081 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 1141 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 1201 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 1261 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 1321 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 1381 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 1441 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 1501 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 1561 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 1621 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 1681 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 1741 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 1801 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 1861 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 1921 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 1981 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 2041 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 2101 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 2161 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 2221 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 2281 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= =============================== ================== 39 29 96.3 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : | # Right flank : | # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 92-2334 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDD01000627.1 Acinetobacter baumannii strain ABBL023 contig-9000037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 92 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 152 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 212 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 272 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 332 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 392 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 452 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 512 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 572 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 632 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 692 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 752 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 812 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 872 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 932 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 992 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 1052 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 1112 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 1172 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 1232 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 1292 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 1352 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 1412 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 1472 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 1532 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 1592 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 1652 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 1712 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 1772 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 1832 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 1892 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 1952 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 2012 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 2072 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 2132 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 2187 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 2247 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 2308 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 38 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : ATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTAG # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2-209 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDD01000633.1 Acinetobacter baumannii strain ABBL023 contig-9000054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 62 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 122 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 182 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : AG # Right flank : ATT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //