Array 1 11487-9439 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054010.1 Prevotella melaninogenica strain FDAARGOS_760 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 11486 47 100.0 30 ............................................... CCCATTTCGCAGCCTTTAGCTGGTGCTCAG 11409 47 100.0 30 ............................................... ACCAGTAAGGGTGTAGGCAATCATCGTTAG 11332 47 100.0 30 ............................................... CATTTCATTTCGTCTATTGATTTAACATAA 11255 47 100.0 30 ............................................... TTATTAAGAGTTGCTTTCTTAATTGCCCTA 11178 47 100.0 30 ............................................... ACTTCTGCTAACCGTGCTTCAGCTACTTTC 11101 47 100.0 30 ............................................... ACTTGCCTGTTGAGCAATTCAACCAAGTTA 11024 47 100.0 31 ............................................... TACTTGCCTGTTGAGCAATTCAACCAAGTTA 10946 47 100.0 29 ............................................... ACGCTATTGTTAACTTGCCTGTTGAGCAA 10870 47 100.0 29 ............................................... GTGGACGTATCTATGAATATCTCAAGGTA 10794 47 100.0 30 ............................................... GCCCTAAGACAGGTCTATATCTCTGCACTC 10717 47 100.0 30 ............................................... ATGAAAAGAAGTACGGTGTAGAGATTGCAA 10640 47 100.0 30 ............................................... TGCCGAGAAAGAGAATATACATACTATCCA 10563 47 100.0 30 ............................................... AAAAGTGGGAAGACCATCTTTACGAAACAA 10486 47 100.0 30 ............................................... TGCTTGTTGTGGTGCTGCCTGCGTTCTGTT 10409 47 100.0 30 ............................................... TAAATTGAAGTATAAGCGTAACATCTTAAA 10332 47 100.0 30 ............................................... CAAATGCTATTAAATCAGCTGAGGAAGCAA 10255 47 100.0 30 ............................................... CGTTTTATAGTCTATTATTGTGCTATTTTT 10178 47 100.0 30 ............................................... CCGCTAATATTGATTCTCCTGCTTCAAATG 10101 47 100.0 30 ............................................... ACCCTGCGTGGTACTCTGTCGCTTGCTCCA 10024 47 100.0 30 ............................................... GGGTACGTGTACTTTGGTAGTTGCTTCTTA 9947 47 100.0 30 ............................................... TTATATTGATTGTTTATTTTCTCTTTATCA 9870 47 100.0 30 ............................................... GGCTCGCGTTGCAGCGGATAATAACGCTTA 9793 47 100.0 30 ............................................... CTGCTAACGTTGATTCCCCTGCCTCAAATG 9716 47 100.0 30 ............................................... CCTGCTGGTATTCGTGATTCTTCTGTGTTT 9639 47 100.0 29 ............................................... CATTTGACTATAATTTTAATTAATACTAT 9563 47 100.0 30 ............................................... AATGAATATGCGAGGGAGTATGAAGAAGGT 9486 47 78.7 0 .....................A....C.....T.CA..C..A.T.CA | G [9454] ========== ====== ====== ====== =============================================== =============================== ================== 27 47 99.2 30 GTTGTTTTAGATACCACAAAGGTACAGATTTTCAAGCAAATCACAAC # Left flank : AATTATGTGGATTCTTGTATTCTTTGATCTCCCAACGGAAACAAAGAAGGAGAAAAAAGCCTATAGTGATTTCCGAAAATCCCTTATCAAGGATGGGTTCACTATGTTCCAGTTTTCCATCTATGTACGCCATTGCGCAAGTATGGAAAATGCAGAGGTACATATAAAACGAGTTCGAACCATGTTACCAAAGTTAGGAAAAGTCGGAATACTCTGTATAACAGATAAACAATTTGCAAACATTCAACTCTACTATGGCGAAAAAGAACAAACTCCTAACGCACCTGGACAACAATTAGAACTTTTTTGAACTTTATACCCTAACAATTAAAAACAAGCTTTCAATATCCTCTTAACCAACTTAAAACTTATCCTTCTCAGCATAGTCATTAAAGTAAAAAATCCCATTCTAAACGAATGGGATTTCACTTTGTAGTATCAAATTATTTTCGAATAACAAACTTATATCTTGTTGTTAGCCAATAAATTAAACAATATCA # Right flank : GAAACATGCTGATAAAGGGGAAAGTAGTATCATTATACCACAAACATGGTATTTTTCAGATAATTAAGGCATAAAAGGCATGATAAATAGGTCTTTTGAAGCATTATTTGAAATAAATACAATATAATTCTTTGTGGTTTGAAGATTAATATATATCTTTGCCGACAAATCCAAATAATAGGGATAAAATAGATTAAAGAAATAGGGTAAGACTAAACTTAATCTATAAATTGCAGGATAATTCCACAAGCACAAAGTATAAATTCAAGAGATAAAATTCAATAAAAAAACAGATTATGAATAAAGTAAAATTATTATTAGATTTCGTTCTTAATACCGCAGCATCGCTGAAGGGTACAGGTATTCATTTGATACGTATAGCTATCTTTATCATCTTCGTATGGATTGGTGGTTTGAAGTTCTGGAACTATGAGGCAGAGGGTATTGTACCTTTCGTTGCTAACAGTCCATTTATGAGCTTCTTCTATGCAAAAGATGCA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTTAGATACCACAAAGGTACAGATTTTCAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 1102514-1102343 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054010.1 Prevotella melaninogenica strain FDAARGOS_760 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1102513 33 97.0 36 ...........................G..... AGATCTACAATCGGTGAAAGCATAGTCGCCAATTTC 1102444 33 100.0 36 ................................. CGCGCTACAACCGCTGAAAACAAACCCTCCAATTGT 1102375 33 97.0 0 ............G.................... | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 98.0 36 TGTAACACTATTTGGAATGGTTACAGAAGTTAG # Left flank : TATAACTCTTTGCATTGATATTTGCAAGAAAGTAAATGAAAATATGGTGTGGCTTAGGAAAACCGATGTGTCTGTTATTTAATGATTATCTTTTTACCATTGACAATATAAACACCCTTAGGCAAAGCATTAATTTCGTCAGTGCTTGCTTTACTTAGCCGTTTTGTTCCATCTATTGTATAGACATCAGCAAGTCCTGCTTTATTATAAACAGTGTTTGTAATGCCAGTAGTACTACCCTCTATTAAGAAAAAATCTTCCCATTGGTATGCTTGTTTATATGCGTCAAGACTATTCTTAGGAACAATAAGTTTACATTTAGATTTATTAATGCCGTTAAGAGCATTTATGCCACAGGTTGGTGGTACGACTGCCTCACTCGAAATCTGTGTTATACTTGTACAGTAGTCAAATGCTGATGTTCCTATAGTCTTAACACTATTTCCGATATTTACTTTTTGTAGGTTGGTGCAAACTCTGAAAGCACACCCTCCAATTGT # Right flank : AAAGAAACATCTGTCGAAAGCACTGCTGCCAATTGTGGTAATACCATCACCTATTATAATTCTTTTTATAATTCGATTAATATTATATTTGCCCCATGGTGCTTCGTTTCTGTATGAATAATCATACATTTCCCCTTTTCCTGAAATGGTCAAAACTCCATCATCAGTAAGGTGCCATGTTAGATTAGGTCCACAAGTGCCAGACGTCTCGGCATTAGCTGATAAGCCCATGAGTAGGGCTATTAACAAGATGTAGATTTGTTTCATATTAGTACTTTTATATAAATAATACTTTTTTGATTTACGGAAGTTCAAATACAAAGATAAACAAAAATTATTATAAACCTTAATTTCGCAGTATAAATTCTTGTAAGAACTTCAAGTGCCTGAAAAACAACGTTCTCAAAACACTTGGATATGTCAGAAACTTCACCTATCTTAGTGCTACGAAAAGTGTGAGATTTAATATATTTAACTTTCGGTCACATCAAAAATTACAT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTAACACTATTTGGAATGGTTACAGAAGTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //