Array 1 52844-52396 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRP01000019.1 Acinetobacter sp. WCHA39 NODE_19_length_56250_cov_128.626, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52843 28 100.0 32 ............................ AATGCGTAACCAACAGTACCCACATTAGCTAA 52783 28 100.0 32 ............................ ATGCATCTTCCGCAATCTCCATTCCATATACA 52723 28 100.0 32 ............................ CACAAAGATGCTATCAATGAAATCGCAGAGCT 52663 28 100.0 32 ............................ GACCATGGCATATTTAGCATAAGTTGATGTGT 52603 28 100.0 32 ............................ GAATAGAGAATGAAACACGATATACAACCCCA 52543 28 100.0 32 ............................ ACCTTCAAGTACTGCCAAATCACCATCATCAC 52483 28 100.0 32 ............................ TTCAAGGTGGGTTTGATACAGCTCCAAGCTGT 52423 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CAATCGGAGCAGAAGCCTGCCATCGTAGTTATAATGTAATGTATTTTAACGCGATAAGTTTATTTGATGAAATTAGTAATTCAATTGCCTTAGGAGAAATTAAAGATTTTAAGAAAAAAATATGTTCTACAAAATTACTCATCATAGATGATTTCGGATTAGGTGGTTTTAATCAATCATTAGCGCCATCATTTCTTGATATCATTGATAAACAATCACAAAATGGTGGAATACTAATTACAAGCCAAGTTCCTAAAAAGTTGTGGTTTGAACAATTTCAAGATCTATCTATTGCAGATGCAGTTATGGATAGAATTTTACACCGTTCATATGATTTAGAAATTTCAGGAAGATCTTACAGAGAAAAAGTTTTCGCTAAAAAGAAGACTAGTTAACTTCGACCTATGTGGTCTACTTGAAATAGTAATTGATGGTAGACCACGAACAAGAATAGGTGGCTGAATTATCCAGTAATTTGCAATCGCGCTACAAAGGCGCAT # Right flank : TATTATTTTCAGTTATACTTATGCAAGCGAGATATTCTGTAAGTAATTCTTGTAATAAAAGCCAATTATTTCAGTGAGATAATTGGCTTAAGTGAGAGTTGCGATTATCCGCTAATTCGTCGGTCATCCCAATAACACGGCACTACAATCAAATGGTTCTCATGCAACCGTGACCATAATCGGACACCTAAATCCCGTTGCATATTCTGTAATGTGAAATTGGAAATTAGCAGCGTCGACTTCATATTGTCATAACGGCTATACAGAACCTTATGCACCATCTCCAGACGTTTCTCATGCCGGTCATGCAGGCCATATTCATCAATCACTAATAAATCAAAACTGGAGAAATGGTCGATGACTTCTTTCTCAGCGCGTGAAGTGTCTGACCAGGTATCCATCATTTTTTGAGCAATTTCTGCACTGGTATAGTAGCGTGCAGATTTTGTACTGTTATGCAGAATGTTGCGAATAATTGATGCGCTCAGATGGGTTTTACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12326-951 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRP01000009.1 Acinetobacter sp. WCHA39 NODE_9_length_113627_cov_134.223, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12325 28 100.0 32 ............................ AGGACCAACACTGCGAGCTGAGCAATCGTAAA 12265 28 100.0 32 ............................ AATCACGGTGCCTGCGTCACTATGCAAGCGTC 12205 28 100.0 32 ............................ CTTATCTTGAATATTTTGCAATCAATGACAAA 12145 28 100.0 32 ............................ GCAGGCACAGCTTCAGTTACCACAATCAATGA 12085 28 100.0 32 ............................ TTGATGGATGCCTTTAAACGTACCTTTAACAA 12025 28 100.0 32 ............................ GATCCAGTTTAAACCTATTTGTCCGTCATCAG 11965 28 100.0 32 ............................ TTCCATTGCTAAAGCTCGCATATTGTTTAAGT 11905 28 100.0 32 ............................ AGTCATTTAGAGTGGTTGTCTTCACCATGTCA 11845 28 100.0 33 ............................ CGCTTAACACAAGAGCAAGAATCGCCCCTACAA 11784 28 100.0 32 ............................ TGGTAGAAATGCGCCCACCGACTGCAATGCAA 11724 28 100.0 32 ............................ GCCAAAATTTGTAAAAGACTATGTTTGTTGGG 11664 28 100.0 32 ............................ GTAAAAGACACAACTGCTGAAAGTACTTTTTT 11604 28 100.0 32 ............................ GTAACGTCATGAAAAAGCCGACACTTAGAACA 11544 28 100.0 32 ............................ TATTTAGCAAGTTTGCAGGAAGTAGGAGGTGT 11484 28 100.0 32 ............................ CGAAGAAATCGCAGCAGGGCATCGTATTGAAT 11424 28 100.0 32 ............................ CTGGAATGCCATGTTGAACTCTGATTCTTCTT 11364 28 100.0 32 ............................ TGAATTTATTGCCACTGTTCAGAGTGCAGACC 11304 28 100.0 32 ............................ TTGAAGATACAAAGAATGGTGAGAGTAGGGAT 11244 28 100.0 32 ............................ TTTTAAAATCGGTGTACCAAAACGCTCTAAAA 11184 28 100.0 32 ............................ AAGCTCACCCGAAGCTCTTGCAGCATTCAATG 11124 28 100.0 32 ............................ TGCGAATGTTGTCATCATCCATAGTGCAATTC 11064 28 100.0 32 ............................ GTTTCGTTGAAGTCAGCAGGCGCTAATGCAGT 11004 28 100.0 32 ............................ TACGTTTCAAGCCATTGTTGATGCGCTTTGTG 10944 28 100.0 32 ............................ AATTTTCGGTGTTTCGGAAGATGATGCACAGA 10884 28 100.0 32 ............................ ATTCCATTGGCTTTTCACCAATCCAGTTCAAA 10824 28 100.0 32 ............................ ATCTTCTGAAAAGACTCGAATGTCTTTGATTT 10764 28 100.0 32 ............................ TATTAGGTAGTTGATTTAACTTTTACCAATGC 10704 28 100.0 32 ............................ TAGATGATCTATTTGGTATGGCTGTTATTGGG 10644 28 100.0 32 ............................ ATGTATCTCTTGGTAATGCAGAGCCAATCTGA 10584 28 100.0 32 ............................ AATGCGGTTTTGATGGTGATTGCTGCTGAAAC 10524 28 100.0 32 ............................ ATTTAATCAAACAGACAAACAACAGATCAGTT 10464 28 100.0 32 ............................ CATAAGAACTGGAAAAACCTTATATACAATGA 10404 28 100.0 32 ............................ GTTAAGAGAGCCTCTTGTATAGCCCACTGGAC 10344 28 100.0 32 ............................ TCCAAAGAGAGCATAGAGAAACTTAGTGTTTA 10284 28 100.0 32 ............................ TGATCTTCTCCAACTCTCACCATAATGATAAA 10224 28 100.0 32 ............................ AAATCGCTCCATTGTCTCTTTAGCGCGATTAA 10164 28 100.0 32 ............................ ATTGCAAGCGTCTAATTTCAACAGTACGTAAC 10104 28 100.0 33 ............................ CCGTACCACTTTCGGGATAACAAACTGTGTTTG 10043 28 100.0 32 ............................ TTATACATTGCTATTTGGTCAAACCACATCTG 9983 28 100.0 32 ............................ TTAGCTAGAGATGTGGCTTGGTATTTAAAACA 9923 28 100.0 32 ............................ CACTTGCCATAGCAATAGATCAGGCTGATAAA 9863 28 100.0 32 ............................ TTGAGATGAGCAGTTGCCTGATGTACATGGAA 9803 28 100.0 32 ............................ AACTACAAGTTGACTGACATTCGTCTTGAAAC 9743 28 100.0 32 ............................ TGTCTCAAATCTCAGTAAGCCTTTAGCAAAAT 9683 28 100.0 32 ............................ AGATAAAAAAATTATTATTTGGTCTACACAAT 9623 28 100.0 32 ............................ ATCAATAAATTCTTGATCAGGTGTACATTTCT 9563 28 100.0 32 ............................ GTGATTCAGGCAAGTACCTGAGATTATACGAA 9503 28 100.0 32 ............................ GATACACGTCCACAAGACGCCGATCTCCCGTA 9443 28 100.0 32 ............................ AAGTTGTCATAGCTTCGCCAAATTCCCAGATC 9383 28 100.0 32 ............................ ATGTCACAACATCACAAGCAACAATTTCACAG 9323 28 100.0 32 ............................ TGTGGCATTGAGACTTTAGGCACTATTACACA 9263 28 100.0 32 ............................ GTCACCCATGTGACACCAGATTCAACATTATC 9203 28 100.0 32 ............................ CACCACATTGGTCATAGCGAAGCATTTAAGTT 9143 28 100.0 32 ............................ TATATCAAAAAAGGGCGATTTAGCTATATTAG 9083 28 100.0 32 ............................ CGATCTGTTGTTAAGGCTGTGTCGGGTTCACA 9023 28 100.0 32 ............................ AGAACAAGTATTCTTTGAAATGGAACGTATAA 8963 28 100.0 32 ............................ TGTGAAGCGATGGCTCGGCTCCGTAGTGATGC 8903 28 100.0 32 ............................ GCCGTGAAATCTTAAAGCAGTTGGACAAGCCT 8843 28 100.0 32 ............................ TTAATATTAAACACCCATATTTGCACCATAAA 8783 28 100.0 32 ............................ TCATGTGAGTGGGAAGCCCTGTTTGATGTGAG 8723 28 100.0 32 ............................ CATCAAAATCGCGACCAACTAAACTGTTGTGT 8663 28 100.0 32 ............................ ATGATCTTGATATAGGTCTCAAAACTACAAGC 8603 28 100.0 32 ............................ TTAAAAGATAGTTCGATGATCAATCCTGCATA 8543 28 100.0 32 ............................ TGCATAGAATTTGCAACAAACTGACACTGATA 8483 28 100.0 32 ............................ GCTTGAAAACTTACCTGTAAAGTCGGCATAAA 8423 28 100.0 32 ............................ TGTGAATGGAAACGCTTGCTTAATGGTCATGC 8363 28 100.0 32 ............................ GTACTACAGCACAAACCGTATCTTTGTAGCAG 8303 28 100.0 32 ............................ TTCAGGGGAGCTTGGTGAAACAGTTTTAACAG 8243 28 100.0 33 ............................ ATGCTTATAGAACTTCTCTACATATACGTTTTC 8182 28 100.0 32 ............................ TGACATTTCAATTGAAACGAACAACACTGGTA 8122 28 100.0 32 ............................ GCTAGTGTGCTTGGGTGGAAATCAATCCAATA 8062 28 100.0 32 ............................ AATGATTATTTCAGCCGTTCCTATATCCTTTG 8002 28 100.0 32 ............................ ACCCTAGAGACGGCAATGATGCTGTGATTGTA 7942 28 100.0 32 ............................ ATCTACACCCAATATTCAAGCGCCAAATATCA 7882 28 100.0 32 ............................ AGCTATTTGTAAGCTGTGGCGCATTGGTATTA 7822 28 100.0 32 ............................ TGCATATTTGATCTGTTTAGCAATACGAAAAA 7762 28 100.0 32 ............................ TAAAACGGCATAGCTATCCAAAATATTTTTTT 7702 28 100.0 33 ............................ GACCTAATCGTCATGTATGGCAGTGCTTGATCT 7641 28 100.0 33 ............................ TTGAGCTGTTCCGCCACTTAGAGCATCACGCAA 7580 28 100.0 32 ............................ GGATTTGCTCTGTAATTTCAGAATATTGTCCA 7520 28 100.0 32 ............................ TGAAGGAGCGTTAAGTGAACCTGAATATCAAG 7460 28 100.0 32 ............................ TGAAAATCACAAAAATGGTGAAAAAACTAGAA 7400 28 100.0 32 ............................ TGCCTTACTTTCAGCCAGTGATTTAATGTCAT 7340 28 100.0 32 ............................ AATCTTTTGGATTGAAATCATATTCATTATTG 7280 28 100.0 32 ............................ ATCAAGTATTGAAATGAGTAAAACCATGATGC 7220 28 100.0 32 ............................ GACCTGATTAACTTCATGTTCGACATACAAAA 7160 28 100.0 32 ............................ GCACCTTTTTCTGCGGCTTCAATCTTAAAACC 7100 28 100.0 32 ............................ AACATTGCAGCTTGAGTAATGTTGCCACGTGT 7040 28 100.0 32 ............................ CCAATGATGAAGTTAGCCGCAGCAATGTTTGT 6980 28 100.0 32 ............................ ACCATCACGATTCGCTACAATTGACCGCTTTA 6920 28 100.0 32 ............................ GATGTGCTTGCGTGCTTCTGCAATCCAAGGCA 6860 28 100.0 32 ............................ ACTGGCTAGGCTGATCCCCGAATCGAAGATGG 6800 28 100.0 32 ............................ GCAAGTGCAGATTGAAAAACTACTAGCTGATA 6740 28 100.0 32 ............................ AGCATTCAAAACTAGATTAAAAGGCTTATCCT 6680 28 100.0 32 ............................ ATTATCAATTGCATCTTCAATATTGCGTTCTG 6620 28 100.0 32 ............................ TTTCGATGAGCTTTTTTAGACTTAACTAGCAC 6560 28 100.0 32 ............................ TCTTGCAGTCCATACTCACGGATAAAATATTG 6500 28 100.0 33 ............................ GAAAAGGAATAACATCCAATGAGGACCTGCCAA 6439 28 100.0 32 ............................ TCGTAACGACAGATAATCGGCTGATACTGGTT 6379 28 100.0 32 ............................ TTGTTCTTCTAAACGCTGAATCATCAATCTTT 6319 28 100.0 32 ............................ GCGCGGGTCATAGGTCCATACCCAATGGTTAA 6259 28 100.0 32 ............................ TTTCAGTTTTGCTGCAAGTGTTAAGGGTCTTA 6199 28 100.0 32 ............................ GTGAGTATGGACTGCAAGAGGGCGATTTGGCA 6139 28 100.0 32 ............................ ATGTTGATACCTTGGTTAAAATGTACGACTTC 6079 28 100.0 32 ............................ GCCACCACCGACTGAGATCATCTCTCCCAGCT 6019 28 100.0 32 ............................ GTGACCATCAAGCCACGACATTTGAAGCAAAA 5959 28 100.0 32 ............................ TGCACCAATCACTACTGACACCTTTGACATAG 5899 28 100.0 32 ............................ ATAATCTCACCGCTGTTGGTGCGACCTAACAA 5839 28 100.0 32 ............................ AAGAAAGCGCATCATCACGACCACCATCACGA 5779 28 100.0 32 ............................ TTGTGCCATGTGCGAGTAATGCCCTGCCAGAT 5719 28 100.0 32 ............................ ACATAAAGAAAGAGCTAACTTAGCTAGTTATA 5659 28 100.0 32 ............................ AACAGCAATTTTTGGTGTTTCTTGATTTGCAT 5599 28 100.0 32 ............................ TATGTCATCAATAATTGGTTTTAGAAGCCCCA 5539 28 100.0 32 ............................ GTAATTTGGAGAACGTACGATAAGCATGATTA 5479 28 100.0 32 ............................ GCAGCAATGTTTGTTTGTTGAATCTCAGTCAT 5419 28 100.0 32 ............................ GACCTAAAGGACGGGGATTCCTCCTGCGAGAC 5359 28 100.0 32 ............................ GTTATCAGACCCGTGTAGAGTTTTTTGAGCAG 5299 28 100.0 32 ............................ TGTGTAAAGATTCTTGTAGAGTCGGTGGCAAC 5239 28 100.0 32 ............................ CACAAGGATCTTTGGAGAATATTGCACAAGCA 5179 28 100.0 32 ............................ ATTCGCCTGATCCATCTCGCCAATTAAGATTT 5119 28 100.0 32 ............................ GCCGTGAAATCTTAAAACAGGCTGACAAACCT 5059 28 100.0 32 ............................ TCCGCGCAAAGCTGCAACAACTTGCTTGATTT 4999 28 100.0 32 ............................ TGTGCAACTTCAAGCGGCATGGTTACTTCTAA 4939 28 100.0 32 ............................ AAGAAAACCAATTATTTGGTCTTGTTGAAAAG 4879 28 100.0 32 ............................ ATCCAATCAGCAATAATCTGTTCTTTGCCCTT 4819 28 100.0 32 ............................ TCTCGGCACATCGCTAAACGGCTTTAAAGAAC 4759 28 100.0 33 ............................ AAGGCGTTTCGTCATCCATCCACCAAGCACCCA 4698 28 100.0 32 ............................ CGACATCGCTTGCTCAAAGTTTCCGCTATCTT 4638 28 100.0 32 ............................ TCTGATACTGTTGGGAAACCCATCACTGGCTT 4578 28 100.0 32 ............................ TTTCAAATCCGATTTAGATTTGATGGCAAAGG 4518 28 100.0 32 ............................ GTGTGTTGTGTGTGGTAGATCGCCAGTGGATG 4458 28 100.0 32 ............................ CGTACCACATGAATGCTTCAAAATCGCTTTCG 4398 28 100.0 32 ............................ TTATGATTTGACTGAATATCTTTTTAGAGAAG 4338 28 100.0 32 ............................ GATTAACTCCTTATGCAATTGCAATTGAACTG 4278 28 100.0 32 ............................ TGTTGCCAACTCTGCGTCAGTTGGTGATTTAC 4218 28 100.0 32 ............................ TGAGCGAAGACAGTTTCTAACAGAAGTATTGA 4158 28 100.0 32 ............................ ACAATCAATGACCAAGACAGCAAAGAGTACGA 4098 28 100.0 32 ............................ GATTTAAAAGCGCAAGAAGCTCAACATGTTTC 4038 28 100.0 32 ............................ ATAATCTCACCGCTGTTGGTGCGACCTAACAA 3978 28 100.0 32 ............................ CATGAGCACAGTGAAGAAAGCACGGATACCTT 3918 28 100.0 32 ............................ TAGCCATCAAAGCGCCAATCAATATAGAAATA 3858 28 100.0 32 ............................ GCCGAACTGTCCACCGCCACCAGTGTAAGCAA 3798 28 100.0 32 ............................ TGAACCTGAACCTGAACCTGACCCGAATGATC 3738 28 100.0 32 ............................ TTGATCAAATTCATGATCAACAGGTTTTGGTT 3678 28 100.0 32 ............................ AGTAGTACATCTTCACGGGTCAATGCACCAAA 3618 28 100.0 32 ............................ TGCATGACATACTACAAAATAATCAGCATCAG 3558 28 100.0 32 ............................ AGCGCGGAACAGCGTTATAAGCTAGGCTGTGA 3498 28 100.0 32 ............................ GACAAGCTCACGACGAAACGTATCCCAACACG 3438 28 100.0 32 ............................ AGTTGATTCCCACCCGTTCAACCCATTACTAA 3378 28 100.0 32 ............................ ACCAGTTGGAACACCAATTTCGGCACTTATAC 3318 28 100.0 32 ............................ TTGTACGCGGACTTCTGCCATGAGTAGCTACT 3258 28 100.0 32 ............................ GAAGAAGTCACTGGAAATGACTTAAAACCTTT 3198 28 100.0 32 ............................ AGTAAAGCAAATTTTATAAAGAGTACCATCAC 3138 28 100.0 32 ............................ ACGTTGTTTAACCAATGCCACTGGTACTTGAT 3078 28 100.0 32 ............................ AATCAGGTAAAGCAGCGTAAACTTGTGATAGT 3018 28 100.0 32 ............................ AGTAGTGAACAAGCCTGTGATAGATCCTGATC 2958 28 100.0 32 ............................ TCGTCCTGAAATGATTGATGCTTTGGTTTTTG 2898 28 100.0 32 ............................ ATGATCCAGTGGGGCTTTAGGAATCCTAAAGT 2838 28 100.0 32 ............................ CCCGTAAACCCGTAAACATGTTGTCATGTGGT 2778 28 100.0 32 ............................ ATTTAGAAAAGGGAAACCATCTGGAAAAGATA 2718 28 100.0 32 ............................ TCCTTAACTAGCTTAATAGAAGTCATAACACC 2658 28 100.0 32 ............................ GTTCATTTAAGAAATAGTTGCAAGCATGGGCT 2598 28 100.0 32 ............................ TTTAACAGAGTTGATAGGGTCTGATAGACGAG 2538 28 100.0 32 ............................ TTTGCTTTAAACAACATGCGACCCTCAAGCCA 2478 28 100.0 32 ............................ GACTCCCATAGCTTCAAAAATTGCTTGTACTT 2418 28 100.0 32 ............................ ATGAAGAACTTTCTCAAATTTGGATTAAATGC 2358 28 100.0 32 ............................ ATTAACGCACCAGCACCAACAGCAACAGGAAC 2298 28 100.0 32 ............................ TGCCACTGGCATAATAACCATTGTATTTAAAG 2238 28 100.0 32 ............................ TTTTTGGGGGATTCGCGCGCTCACCCCTCAAA 2178 28 100.0 32 ............................ TGTGGAATTTTTAATATCGAGATTAGGCCAAG 2118 28 100.0 32 ............................ TATGGCAGACATTACAACGCTTAGGGCTTGAG 2058 28 100.0 32 ............................ TATGGCAGACATTACAACGCTTAGGGCTTGAG 1998 28 100.0 32 ............................ TATGGCAGACATTACAACGCTTAGGGCTTGAG 1938 28 100.0 32 ............................ TTGCGGTGATCATTTAAAAGCGTTTATAGGCG 1878 28 100.0 32 ............................ AGAGGGGAAATAATCGGAAAGCGAGGGGAAAA 1818 28 100.0 32 ............................ TGGTCACAATTTTGTTGTGATACCACGTATTA 1758 28 100.0 32 ............................ TAAGCGTTATTTTGTCAGCTATTGGCATTGCT 1698 28 100.0 32 ............................ CGACATCGCTTGCTCAAAGTTTCCGCTATCTT 1638 28 100.0 32 ............................ TTAAACGTTCGATGAACCAGCTTTACCGAGAA 1578 28 100.0 32 ............................ GACAACAGCACAAATCGCAGAATTAACAACAT 1518 28 100.0 32 ............................ AAGTAAGAAAACAATTTCCTTTTAAGTATTTC 1458 28 100.0 32 ............................ GTCTGGGCATGTATTACAAACATCATTATCAT 1398 28 100.0 32 ............................ AAACAGGTCATTGATATTCAGCGATTCAGGCT 1338 28 100.0 32 ............................ GTGTTGAAATTGCGCGTATTCCATTGATGCCG 1278 28 100.0 32 ............................ TTGGCAATTCACCCAAGCGACGACCCGTGTAA 1218 28 100.0 32 ............................ TGAATTTCTTGGCGCAAAACGGCATCTATGAT 1158 28 100.0 32 ............................ GCTTTCATGTGCCAACTGTGCTAAGAAGTGAA 1098 28 100.0 32 ............................ ATAGTGAAGCTGCCTGTGCCTTTGGCTGACAT 1038 28 100.0 32 ............................ TTCCACATTCATCATTCGCTTTGCCAAAGCTG 978 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 190 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTAGATATTCGAAAATGGCTGGAACGTTTAGAAGATTATGTGCATATTACATCAATTCGTGAAGTACCTAGCGATATTAAAGGCTATGCCATTTACAAGCGTAAGCAAGTGAAAACCAATGCCCAGCGTTTGGCACGGCATCGTATTAAACGTGGAGATATTGGCTTTGATGAGGCATTAGCAAGATATAGCAATGTAGTTACCACAACGAACTTTCCATATATCGAAATGAAAAGTCTGAGCACTTCAGATCAGCAAAGTGAAAAACGTTTTAAATTGTTTATCGAAAAGCAACCTGCTGAAAAAACCAAAACTCAGGTTTTTAGTACTTATGGATTAAGTTCAGTATCATCCGTACCCGAATTTTAACCCAATATTTTTTCACTCTTTAACAGCTTAATAAAATCAATAAGTTATAATAGTAAGTTAATACTTGGGTCTTTTATAGGATTTTAAGCATAACTTGCTGTTATAGCTTTATTTTTTATGTTAAAACTATT # Right flank : GCTATTAAAACCATCGCGCTTGCATATTCTCATATAAATAGCCCATTTATTCTTATTCCTAATCTACCATCAGTTCTTATTCATAATAGTCCATAACAAATATAGTTATATCCATGAGGTAATTTTTTAAGTTATTTAATATATTTGCGTATTCTTATTTTAATGGATACCAAACCTTATAAATAAATGAATAAATATTTCTATCTTACTTGGATGCTTTAAAGTTTGTATAACAGCCCCCGTGTTAAATTTATCACCCATCAAGTATTTCAATATTTAAATCAACTGAGTGTTTTTTGATCTAAAAATATTGTTTTTAGGGGAATAGTGGTCGCTTTTAAAAAGATATATTTATCTCACTTAGTTCATTTCAGTTAGAGGAAAGACAATGACACAAAAACCTAATGATCAACGTTCTGTAGTGAAGAATCCTAATAATATTCAACATACACAGAATCAAATTAATCGTATCAATCAATTAAACCCTAACCATAAACCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //