Array 1 121193-123722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFAL01000024.1 Bifidobacterium sp. UTCIF-38 contig00027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121193 29 100.0 32 ............................. CACGCGGTCTGTGCGGGTGCGTTCGGCAGCAT 121254 29 100.0 32 ............................. CGACGTTCCGTACAGATGGCCCGCCCCGAGAT 121315 29 100.0 32 ............................. AGTCCGAGGTGGGTGAATGATTCGAGGGTGAA 121376 29 100.0 32 ............................. TCGCCCAGTGTGTCCGAGCCGTCGCCGCTGAG 121437 29 100.0 32 ............................. CCGTCCACGCCCACCGGCGACACGGACACGCT 121498 29 100.0 32 ............................. TCGTTCGTGTTCTTGGTCTTCACGTCGCCGCC 121559 29 100.0 32 ............................. TCCTTCAGGTACTGCACGCCCGTGGTCGCGAA 121620 29 100.0 32 ............................. GCTTTGGTGGACCCGAGCGTGATCAACTATGA 121681 29 100.0 32 ............................. GCGCGACAGGCGGACATGGAAGCCGCGTTCAC 121742 29 100.0 32 ............................. AGCAACCCCGCCGCGACCGCCACCCTGACCGT 121803 29 96.6 32 ............................C GGCTCGCACATCCGCGACAAACTTGGAGATCC 121864 29 100.0 32 ............................. GACCTTGCGGCCGGCATGGAAACGGCGCTTCA 121925 29 100.0 32 ............................. AGTGCCGCGTGTTCCTTGACTTCGACCCGCTG 121986 29 100.0 32 ............................. TCGGTGCCCCTGCTGCGTCGCCTGCTCGGTGA 122047 29 100.0 32 ............................. TCGCGCAGGTTCTTGCCCACGGTGTCGGGGTC 122108 29 100.0 32 ............................. ACGTTCGAGTTCTCCAGCGCGCAGATGACGAA 122169 29 100.0 32 ............................. TCGAGCCAGTAGGAGACTCCATCATCTCTCTC 122230 29 100.0 32 ............................. GTGGCCGTGTTCATCGAACCGCCCGACATCGA 122291 29 100.0 32 ............................. GTGACAGCAGCTATCTCCGTCACTCAGCAGGA 122352 29 100.0 32 ............................. TCGGCTCGCAGGGCCGCTGGCGACTTGGCCAG 122413 29 96.6 32 ............................A CGGCACCGAACGGCAGGGCACCACCGCCACCC 122474 29 100.0 32 ............................. ATCGCCGTGTTGATCGACCCGCCCGAAATCAC 122535 29 100.0 32 ............................. GAAACAGCCGACACGATCGACGGCATGTTTCC 122596 29 100.0 32 ............................. TACCCGCAGGCGTTCGTCAAGATCACGCTCGG 122657 29 100.0 32 ............................. ACGTGGCGACGACTTTCGCCTTGTCATTCGTG 122718 29 100.0 32 ............................. TCGCTGATTTGGTTGAAATCCCTGACCTGATT 122779 29 96.6 32 ......T...................... GCGGGGAGAAGCCGCAGGTGCACCTGCCGGAA 122840 29 96.6 32 ......T...................... GCCATACGACATCCCCCGGGGCGTCCCTCGAC 122901 29 96.6 32 ........A.................... ACGCTGCAGGATCGCGTCGACCTGTTCAAGGG 122962 29 100.0 32 ............................. CAGATGCGCTACGCCATCGCGATCCTCAACGA 123023 29 96.6 32 ............T................ GCGACCTATTTCGCGAACGACGCTGCACGGAA 123084 29 100.0 32 ............................. CCATTGACCTACCTGAGTTCGCTGGACTCGGT 123145 29 100.0 32 ............................. CCGCCCACGTAGAACACCGGGGTGCCGTAGGA 123206 29 100.0 32 ............................. TCGCCGACGCTCGTCACCGCGGACGAGAAGAA 123267 29 100.0 32 ............................. ACCTCGTCACCATCGCCAAGGCCACCGGCAAC 123328 29 96.6 32 ............................T AATGGTGGTTCGAGGAATTCCGGGCTGGTGGT 123389 29 100.0 32 ............................. CTCAAAACGGATACGGCGACGGTCGCGAAGAT 123450 29 100.0 32 ............................. GTGGGCGCCGCCCCGATGCATAAGATCCTCAC 123511 29 100.0 32 ............................. GATGTTGGGCCGGGGGAAGTTCCTGTGATTCG 123572 29 100.0 32 ............................. GCGAGTTCTTGGATGACCTTGATTCAGACGAG 123633 29 93.1 32 .............A..............T GACTCGCACAGGTACTTCGTGGTGACGATCGG 123694 29 89.7 0 .......................TG..G. | ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.0 32 GTTCGCCCCGCACGCGCGGGGATGATCCG # Left flank : ACGTATATGACGTATATGAGGAATTCCACGAGGAGGGGGAATGGTAGTCATCGTATTGACTGTTGCCCCGCCCAAATTGCGCGGTCATTTGACCCGATGGCTGTTTGAGATCTCACCCGGCGTCTACGTGGGCAAGGTGACCGCGCGCGTCCGGTCGTTACTGTGGGAGCAGATTTTGGATAATATTGGAACAGGTCGGGCCATAATGGTCTTTCCGTCCGATAATGAACAGGGAATGGAATTCCGCACCTATGGCCAAGAATGGGAGCCAGTGGACTACGAGGGTCTGGAATTGATTATGCGACCGAACACGAGTCAGCAGCAAAGACGGAATGCAGATCGGAAGACCGGATGGAGTAAGGCGTCTCGATACCGTAGGTTTGGTCGATGATGCCGGTGCTGATATGTTGCGTTGCGCATTGATCGTTCCTTTGGAAATGACTGTACGAATCGAATTTTTCAGTAAACAAGTCGTCGTCATTTCGGCATAAAATCAGACT # Right flank : GCGGGGTCATGCTGTATCGACGCCTGTATGGGATTCAGCGCGGTTGTGGCCGATTTCGTTGCTGAGTCCCGCGGATTCGGGGGACTCAGAGGGATTTATTGCGATTTTCGCGTTGAGTCCCTCGACGTCACCCATTCATGCCGATATCGGATCGGAGGCGTTCCGCCGGGGTTGCTTGAGAATGGCGGAATTCCAACGATTTCCGCTTCGTGTTCGGGGGATGGCTGTGTGGTTGGTGCCTGGGATGTGCTCATGGCGTGGGACTCAGTGTCGATTTCTGCTGTTATCGCGTTGAGTCCCGCGGATTTGGGGGACTCAAGGTGGTTTTTCGTGATTCTTGTGTTGAGTCCCGCGGTCATGCTCGTCATGCGCATGTGGGGCGACCGGAGGCGGCGGGACGGACCCGTGTTGTCGCCTCAGGATGGCGACATATCCACGTATTTGGACAGGGTGTTTTGTTTTGTTGATGGACTGAATTAGACAGGGTGCCTAGACTTGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 54303-55173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFAL01000004.1 Bifidobacterium sp. UTCIF-38 contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 54303 36 100.0 28 .................................... CATCAAATCAATCCCCGATGTGATGCAA 54367 36 100.0 28 .................................... CGAGTATCACCGGATGCTCCGGGCGATG 54431 36 100.0 28 .................................... CGGTCCGGGTTCCTCATGGTGGGCCGCT 54495 36 100.0 28 .................................... GAAACGAGCGTGGTGTCGTGGCCCGCGT 54559 36 100.0 29 .................................... CTTTCACACAGCAAGCCGGACTCCGCGTC 54624 36 100.0 28 .................................... CTCGTGGAGCGGTGGACCTACCGGCAGG 54688 36 100.0 29 .................................... TCAACGCCCACGTGGTCTTATGACCAATA 54753 36 100.0 28 .................................... TCGTGCGTCGCCGGGACTTGCACCCGGC 54817 36 100.0 28 .................................... AGGTGGTCGAGTAGGTGGTCGGTGAAGT 54881 36 100.0 28 .................................... CCGACGAGGCGCAAACGTTCGGCGGCAT 54945 36 100.0 29 .................................... GAAGCACTCGGGTACTGTTCGTGACGTTT 55010 36 100.0 28 .................................... GAGTCCCGAGGATATTCGCGAGGATACG 55074 36 100.0 28 .................................... GCGTGTTTGTGTGTATCGCGCGTAGGTA 55138 36 94.4 0 ......................C.......T..... | ========== ====== ====== ====== ==================================== ============================= ================== 14 36 99.6 28 CAAGTCTATCAAGAAGGGTGAATGCTAATTCCCAAC # Left flank : ACTCAACGGGACCGGATTGACGATTCCCAGTTCGCTGAATGACTTCGCACAACAATATGGCTTGTACTGTGAAGGGCGTGTCGACCGACTCGCGGTGCCCGAATATGCGGGCATCGTATGAAAAGGGATGAGGACAGTGGCGGCATGTGGTGTTTGGTGATGTTTGACCTACCGGTCAAAACCAAGCAACAGCGTCGTGCTGCTACAGAATTCAGGAACATGCTGTTGGATATGGGCTACAGCATGGTGCAGTATTCGGTTTACGCCAGATACACTCCCACGCAGGCGGGAAACCGTTCGACGGTTCAGGCGATCAAAGCGGCTTTACCGGCACACGGATATGTGCGCGTGTTGCACATCAGCGATCACCAGTGGTCTTCGGCACTACGATTCTCCAACTCCGAACAGGACCTGGAAGAGGAGACTCCGCAGCTGTTCACGCTTTTCTGAATGAAGAAAGTGCTACAAACCGCAGAAAATGGCCCTTCTTGAGAGGCTAT # Right flank : CCCGTATCCTGCGTGAATTCATTGCTGAATTGACTGTCTCTTAGACCCGTTTCGTGGCCGGCTGTATTGCGATTATGGACGCGCTGCGTGCGCGTCATGCCGGCCCGCCTGTCGGCTTGCACGTTGCCTACAAGCAGCTCCGCCGCTTGCTTCACGGCAACGCCCCGACAAGAGGAACCCTGACAAGAGGAGTCAGGATGAGACCAACGAATTTTCCGGCGCGAGATGTTAGACGCTCGGCCGCGCCATCATGAACCGACTCAATTGCGCCGCTCTCCCGCACCACTTCAGCCATGCCGCCCGGTTGCGCCCCTGTCTGTGCCCCCGGCGGTGCCGCTCAACGCAATTTTCGTCGATTTTGGCGTTGAGCGGCACGACGATACGTCGTTACTGCCTCGCCGTCGTTTTGACATGTTGTCAAAACGGCTATTTTCCAACGATTCTGCAATAGCCAGTATTCCAAAAACTGCCTCTGCCGCCGCCTTGTCTGCCGTTCAACG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTCTATCAAGAAGGGTGAATGCTAATTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //