Array 1 985-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFNV02000031.1 Salinisphaera shabanensis E1L3A Contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 984 29 100.0 32 ............................. CGAATTCAAAAAACACTTTCTCGGCCTGTCCG 923 29 100.0 32 ............................. TGCGCGCATCGCGATCGACGTCGTACACGTCG 862 29 100.0 32 ............................. CAGGGATCCAACGAGAGGGATTTTCATGCGAT 801 29 100.0 32 ............................. TTGTTTGTCGACCGCCTCCACGTCCTGCACAA 740 29 100.0 33 ............................. CACTGGTGACTCACGACCGGTTGACCGTCTCCG 678 29 100.0 32 ............................. AGCTTAGACACGCTCTTTTCGCTCCTGCTAGC 617 29 100.0 32 ............................. GCACGGAGGCTGCGCCGCCGTACCTTCGCAAT 556 29 100.0 32 ............................. GATGACCGCTATCTAAAGCGTCTGCGCTTAAC 495 29 100.0 32 ............................. ACCGGCTTCGCGATGACGTGGCGGTGGGCGCA 434 29 96.6 32 .......................G..... CTCGAATTCATGCGCCGAAGCGCGCAGCACGC 373 29 96.6 32 .......................G..... CGAGGCCCGAGAGACCGGGAGGTCTCAAGCCA 312 29 96.6 32 .......................G..... CGTGTAACCGACATGATCCGCACAGGAGTAGT 251 29 96.6 33 .......................G..... TGTCGAGGCTGCGGGTATGGGTTGTTCGGGGTC 189 29 96.6 33 .......................G..... TCACGAGCAGATCATCGACAAGAAGGTCTGCGC 127 29 96.6 32 .......................G..... CGCAACGGAGAAAGGCAATGAGTACCAACTTC 66 29 96.6 0 .......................G..... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.5 32 CCGTTCCCCGCAGGCGCGGGGATAAACCG # Left flank : CGTACTTGTCCGCGATCTGCCCGGCGGTGGCCGAAAACAGGAAAAAAGGCAGGATGAACAAGCCGGCTGCCACGTTCACGAGCACGTTCGCGCTCATGCCGCCTTCCGTCATTGCCCAGCTCGAACCCTGAAACGCGATCAGGATCACCAGCGCATTCTTGAACAGATTGTCGTTGAACGCGCCCAGAAACTGGGTAAAGAAGAACGGCGAAAAACGCCGCTCGCCAAGAAGCTTGAACTGTCCGGAAGCCATGCTGCGGTCCGAATTAATTAAACGGTGTTCAGTTTATAGCAGCGCAGCAATAGGCTGGCAAGTGGCGCGTCGATTTCCGTGCCGACGGGCGTACGGTCTTGCCTTTTCGAATTTGCAGTGTTCCAGTCTTGGCAAAGACAGCGATGTGCCGTTTCGAGCGGCGTGCCTGAAACCTGAATGCGTCGTTCAGGTTGGTGGAAATTCATGCGCGCTATTCGGTCTTTAAAAATAAGCAGTTATGATTAGA # Right flank : GGCGTGGAAGCGATCAACAAGCTGCGAGGCCAGCCGTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATAAACCG # Alternate repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGTTCCCCGCAGGCGCGGGGATCAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3-689 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFNV02000041.1 Salinisphaera shabanensis E1L3A Contig41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3 29 100.0 33 ............................. CAAATATGGCTTGGCGCGATCGCTCTGGTAAGC 65 29 100.0 32 ............................. CGCCTGAGCCTCTGGCGCAAACGCCCATGCGG 126 29 100.0 32 ............................. CGGGCTAGACTGTTTGGGGTAAATAAAAAGAC 187 29 96.6 26 ............................C GTTTTGTCTATGACCGCTGGCACCGG 242 29 100.0 33 ............................. CAGTACTTCCCCGAGATCGCGGAATGTCGCTAA 304 29 100.0 32 ............................. GAATACCAGCGCAAGCTCGACCGGATGCAGAA 365 29 100.0 32 ............................. CCTTCATGGCCGCCGGGTACGCGAGCGAGTAC 426 29 96.6 32 ............................A GGCGATAAAGCAGGCTGTGTGCGACATAGCCC 487 29 100.0 27 ............................. GCCGAAACTAAGCGACATGAACGAAGC 543 29 100.0 32 ............................. CGTTATATGGGCGACAAGATCATCCCGGCCGA 604 29 93.1 28 ...........................GA GTTAGAGCGGCTGACGAAAGATGAGAGG 661 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.9 31 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : ACC # Right flank : GTTCTGCTGGGTCGTACTCGAGGCCGGCGGCCGCCCGTTCTTCGCAAGCGTGGACAAACCAACGTGTATCTAAGCGGCTTCCACCGAAAGCCGGAGGCCCAGCACCCGCGCGACTTTATAAACCGTCTCCAGTGTGGGGTTGCCCTCGGGCGAAAGCGCCTTGTACAGGCTTTGGCGGCCCAGGCCGGCCTCTTCGGCTATGCCGGTCATGCCCTTAGCCCGGGCGATCGCTCCCAGCGCATTGGCGATAGCGCCGACGTCGCCTTCGCTATCTTCGATGGTGGCATTCAAATACGCCGCCATCGTTTCCGGGCTGTCCAGAAAATCGGCCGGATCATAGTGGCTAAGTTCGATTGTCACGGCTGCCTCCTTGCTGACGTATTAATCCGAAAATCCTCACTGGATTTGTCGCGCGATATGTTTCGCCTCCTTGATGTCTTTCGATTGAGTGGACTTGTCACCGCCACAAAGCAGAATCACCAGCGTCTTGCCGCGCTGGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11332-13043 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFNV02000041.1 Salinisphaera shabanensis E1L3A Contig41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 11332 29 100.0 29 ............................. TCATTAATGGATGTCTCGCCGGGAGTGAT 11390 29 100.0 32 ............................. ATGAGAGGGCCGAGGTATGAGCGAACCGTCCC 11451 29 96.6 12 ............................C AGCCCCGGCTGA Deletion [11492] 11492 29 100.0 32 ............................. ACCGAAAAGAATCAAAGGAGCGTACAGAACCC 11553 29 93.1 27 ...........................AT GATGGAGCCTGCGCACGAATGCCCGAA 11609 29 100.0 32 ............................. TGCCCAGGGCCGGGCATGATCTCGACATTGAC 11670 29 100.0 32 ............................. AAAGGTCATAACACCGACACCGGCAAACCAAC 11731 29 100.0 32 ............................. ACCAGCACCTGTTGAGAATGGATAGTGCCGCT 11792 29 100.0 32 ............................. CTAAAGGTTCCGAACCCCATAAGGTCGCTCGT 11853 29 100.0 32 ............................. CCGTCGCAGCTTTCAGGCCTGTCGACAGCACA 11914 29 100.0 32 ............................. CCGCTTGTGTGCGGAGCGGCTCACGGTACTAG 11975 29 100.0 32 ............................. AATGACGCGGTTCGAGAGCGAAGCCGCATCTT 12036 29 100.0 32 ............................. ACGGCGGCAGGTAACGAGGAACTCGCACAATG 12097 29 100.0 32 ............................. CTGACAGGACGACTTACGACTGCCGAGGTAAA 12158 29 100.0 32 ............................. TCGGAGCGCACGCGGCGCACACACGACCACAG 12219 29 100.0 32 ............................. AATCGGCGAATAACCGGCATTACTTCGCGTGC 12280 29 100.0 32 ............................. GTCGCGATAGCAGCGAAGCGATTGCCACGATC T [12303] 12342 29 100.0 32 ............................. TCCGAAGAGGTAACCGAAACCGAAACGTTGCC 12403 29 96.6 31 ...........................G. ATCAGGATAATTCCGAAGCCCGGAACGAAGT 12463 29 100.0 32 ............................. CCAACGAAATCCAAGCGCGCCGGCCGCGTGCC 12524 29 100.0 32 ............................. GAATGGCGTGCGATTACGGGCGACTCGTTCAT 12585 29 100.0 32 ............................. GCCCGATTTATTATAGCGGCGGGTCGATCAAT 12646 29 100.0 32 ............................. GATCGAAGAGGCCGTGACCACGATGGCTTTTT 12707 29 100.0 32 ............................. AGTGCGCAAAGCGGCGCGGTCACGACGCACTG 12768 29 100.0 35 ............................. TGTTCCCTGAGGCCGTCGCTGAGATGTTCCAGGAC 12832 29 100.0 32 ............................. ACTATCTGGCCGGCGTACTGAGCAGCGCAATA 12893 29 100.0 32 ............................. CGCGATCTGATCGTCGAGCGCAACGCGCAAGA 12954 29 96.6 32 .............C............... ATCGCGGAGAAGGGCCGGCGCACGGGCATCAC 13015 29 93.1 0 .............C...A........... | ========== ====== ====== ====== ============================= =================================== ================== 29 29 99.2 31 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : GCGAGATCGAACCCCCGCCCGCATCGCCCGATCAGGTGCCGCCGGCCATTCCCACGCCCGAATCACTGGGCGATGCCGGCCACCGCAGCGGCTGATATGGCCATGCTCGTCGTTGTGACCGAAGCGGTACCGCCGCGCCTGCGCGGCCGGCTTGCGGTATGGCTGCTTGAGATTCGGGCCGGTGTCTACGTAGGCGACGTGAGCAAGCGCGTGCGCGAGATGATCTGGGAACAGATCGAGGTGCTGGTAGAAGACGGCAACGTTGCCATGGCCTGGGCCAGTCGTCACGAATCCGGTTTCGAGTTCCAGACCGTGGGCGTTAACCGGCGCATTCCAATCGATCACGACGGACTACGTCTGGTGCGGTTTCTGCCCCCTGACGATAAATAGCTGAAAACGCTCGATCTTTAACAATTCGAGTTGGTTAAAAATCCACCGAATTGGCTGGTGGATTGAGGGCCGTCTGAATTGCCATTTGTAATCAGGTGCTTATAATTAGA # Right flank : AACGTTACCGATAACGCGCGCGCCAAAGCTGCTTTACGTTCTCTGCTTCCAATGCTGCGGGTCGCGGCTGCCGTGCATGACTGCCATAACAACGATGAATTCGGGTTCGACGCGGTAGAACACGGCGAATGGGAAGCGCCGAATTAATGCGCGACGCGTGGCGCGGTGCACTAGGGCGTGTTGCCGTTTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 66926-67298 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFNV02000025.1 Salinisphaera shabanensis E1L3A Contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 66926 34 100.0 33 .................................. ATCGTCGATGCTGCGCCAGTGACCCGGCTTGGC 66993 34 100.0 34 .................................. AAATCGCTATACGCGCACCAGCTCCGTTGTTCGA 67061 34 100.0 33 .................................. ATCGTCGATGCTGCGCCAGTGACCCGGCTTGGC 67128 34 100.0 35 .................................. GGCTTAAAGCCGATCACATCCTTGCAACGAACGCG 67197 34 100.0 34 .................................. TCTTTGCTGTCGCAGTCTGGCCACCCGACGACCG 67265 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =================================== ================== 6 34 100.0 34 GTCGCGGCCCCGCGCGGGCCGCGCGGATAGAAAC # Left flank : AGGAGCAATCTCCAGATGATGGTACTCGTGAGCTACGACGTCGCCGTAACCAGCAGCGACGGCCCACGGCGATTGCGCCGCGTCGGTAAAGCCTGCCTGGATTACGGGCAACGCGTACAGTATTCGGTATTTGAAATCGAAGTCGAACCCGACCAATGGGTCAAACTCAAAAGCCGTCTGTGCGATATCATCGACGAAGAAACCGACAGCCTGCGCTTCTACTTCCTTGGGCGCGAATGGCAACGCCGTGTCGAACATGTCGGCGCCAAACCGGTACGCGATCTCAACGCACCGCTTATTCTCTGAGCCTGCACCTGCACCGTGCGCGCGAACCCCAAGCGTACCCAGTAACCCCGGCAGGTTCGCCGATCTTTAAAAAGCTGAAAAACAATTCGTTATGCGACAAGCGGTCGCATAACCGGCGAAATTCGTTCAATATCGCCGCGGTTCGCACAAAGACAGGTTCTAACGCATTAGAAACAGTCGCTTGGACGGACCGA # Right flank : ATCATCGCCACGGGTGCCGGAATTACCGGCAAGAGGTCGCGGCCCCGCGCGGGCC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGGCCCCGCGCGGGCCGCGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.40,-13.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //