Array 1 209651-207544 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZL01000002.1 Salmonella enterica subsp. enterica serovar Cubana strain 89-0199 NODE_2_length_423817_cov_2.63679, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 209650 29 100.0 32 ............................. CTGGCCGCGAGCGCCTGGTATACGGTTTATGA 209589 29 100.0 32 ............................. TAGCCGGGTGTTATGCGAGCTCGTCAGGGAGG 209528 29 100.0 32 ............................. CCAGCGGCAACCCGATCACCATCGAAGAAGAC 209467 29 100.0 32 ............................. CGATACGCATTAACCAGCACGTCGAGTCGGTC 209406 29 100.0 32 ............................. CCAGTTTGTTGATCACGTCTGCAACCTGGCTA 209345 29 100.0 32 ............................. TCGTGATCGACGAGGCCGCATTCCACGAGGCA 209284 29 100.0 32 ............................. ATATCGCTCGCTTAAAACTCTTAGGAAAAAAA 209223 29 100.0 32 ............................. TCATCCTAATTGTCAGCGTCCCCCCCACTGGA 209162 29 100.0 32 ............................. TGAAGAATCCAAACTCCGTGACTTTGAGAAAG 209101 29 100.0 32 ............................. AAATAGGTAAGGCTATGCGTCGCGGTGATAGC 209040 29 100.0 32 ............................. GCTTTCAAGTTATAATTGGTACACTTCTTAGT 208979 29 100.0 32 ............................. TCTTAATACGCGTGAGATCCCGAAATTTTTTG 208918 29 100.0 32 ............................. GATTGACTTAAAGATGAATGTAGAAAATATTA 208857 29 100.0 32 ............................. TGGGCGAAAGCATTTAATCGCGCAGCGGGCGA 208796 29 100.0 32 ............................. ACGCTGGCAACAGCCCCACACTCATCCGCCAT 208735 29 100.0 32 ............................. CTGTATGAATTACCCCTGCTGCCGGGTTCTTC 208674 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 208613 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 208552 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 208491 29 100.0 32 ............................. GCGGAGAATTATATATCGGAATGTTACAGGAA 208430 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 208369 29 100.0 35 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAGGTG 208305 29 96.6 32 T............................ CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 208244 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 208183 29 100.0 32 ............................. CCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 208122 29 100.0 32 ............................. CAAACAATGAAATTTTATTTGACAAATTGGCG 208061 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 208000 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 207939 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 207878 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 207817 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 207756 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 207695 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 207634 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 207573 29 93.1 0 A...........T................ | A [207546] ========== ====== ====== ====== ============================= =================================== ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCTAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 227461-226884 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZL01000002.1 Salmonella enterica subsp. enterica serovar Cubana strain 89-0199 NODE_2_length_423817_cov_2.63679, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 227460 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 227399 29 100.0 32 ............................. TCCATAGTTGCCGTTTCAACGGCTAACACTGA 227338 29 100.0 32 ............................. GCTACGAAGCGCCGCTGGCCGTGGCCTATACC 227277 29 100.0 32 ............................. TGCCGAAACTGGTGACAGAAACGGTGCAAAAG 227216 29 100.0 32 ............................. TAACGGTTGCCGAGGTTCGCGCCGCTGTGGCC 227155 29 100.0 32 ............................. GTTTGCAGAGATTGAGCCGTTCCCCGCTGCTG 227094 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 227033 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 226972 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 226911 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCAATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACATTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //