Array 1 1166850-1175110 **** Predicted by CRISPRDetect 2.4 *** >NZ_UIGP01000001.1 Campylobacter hyointestinalis strain NCTC11610, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1166850 30 100.0 35 .............................. TTATCTGTCCGCTATTCTTGTCCGTTTTAAATTTA 1166915 30 100.0 35 .............................. CTTTCAACTACTTTGATTAAACCTTGAACATTTGT 1166980 30 100.0 36 .............................. GTTAATGTTGTGCTTGGTTTTTAACTGCTCTTTGTG 1167046 30 100.0 36 .............................. AGTTGTTATTTGATTTGTCATTTTTTATCCTTTTTT 1167112 30 100.0 37 .............................. TTAAAATTTTAGCTCTCATAGCGTTATGATTTTTTGC 1167179 30 100.0 36 .............................. TATCCTCCATCTCCTCTTTTGTTTTTAATCCAAATT 1167245 30 100.0 36 .............................. TATCAAAAATGAGCAGGATTGCACAAAAAGAAATCA 1167311 30 100.0 37 .............................. AATGATAATTTTGATTATGAAATTATCGAAGTAGAGG 1167378 30 100.0 36 .............................. GTTAATGTTGTGCTTGGTTTTTAACTGCTCTTTGTG 1167444 30 100.0 38 .............................. GGTTGCTGAAAACTTGACCACCTGCTTAAATAAGAGCG 1167512 30 100.0 36 .............................. CGCACCGAAAAAATTAAATCAATATCAAAAAGATAG 1167578 30 100.0 35 .............................. AATATACCTTTATAGCGCTCTCTCCGCCTATTTGA 1167643 30 100.0 33 .............................. AGATATCTATGCAAACCATAGGGGGATTTTAAC 1167706 30 100.0 34 .............................. AGCAAGAGATAGATGAAGCGTGGGCGAGGCTTAG 1167770 30 100.0 38 .............................. CAAAAATACATAAAGCCCATAGGGTAAGCATAATAAAA 1167838 30 100.0 37 .............................. ACAGAGGTAAAAAGAGACGACGAGGCTATTCAAAAGC 1167905 30 100.0 36 .............................. CAAAGATAAACAAAACCAAATCTACGCTTATGATGA 1167971 30 100.0 39 .............................. GGGCTAGTATATACTTTGGCTTTATATCGAAAAATATCG 1168040 30 100.0 35 .............................. CGGCAAACAAAAATGCATAGTAGCCTACGACTCTA 1168105 30 100.0 33 .............................. TTATTACACTTTCAAGCTCATCAGCAAGGTTAA 1168168 30 100.0 35 .............................. TATATGATGCTCTTTTTATTTGCACCACTCTTTAC 1168233 30 100.0 34 .............................. TGAATATACCAAAGGGCTTTCAAACAAACGGGGC 1168297 30 100.0 37 .............................. CATTTTTTACCCTAAGATATTTTTTCGCAAAACTCTA 1168364 30 100.0 35 .............................. ATCAATTTTTCTAGGGAAGAGGTAGAGCTATTCGA 1168429 30 100.0 36 .............................. TACACCTGTTATTGCTGAGCTTCCTATAATGGACTT 1168495 30 100.0 34 .............................. GCTAGCTTATTTTCTACAAAGACGCTCATTTTGG 1168559 30 100.0 36 .............................. AATAAAGCGTTACTTTTCTAGCATATCAATCAAAAA 1168625 30 100.0 35 .............................. TTTAGAATGCGTCTGTGCAGAGAATAGCATAACGC 1168690 30 100.0 37 .............................. CAAGCCTTTTATTGTATATTTCATATTTTTCTTCGGA 1168757 30 100.0 35 .............................. GTTATGCTTGAAACAATACCCGGAAGCCAATTTTG 1168822 30 100.0 34 .............................. AAAGCCAAACCACGTTTTTAAGGCTATTTAAACA 1168886 30 100.0 37 .............................. GAATTATTCGGTTCTTTTGGTTTTGAAGCAATAGAGC 1168953 30 100.0 34 .............................. TTAGGGTATTTGTTAGCTCGTCTGTTTTAGTGTT 1169017 30 100.0 36 .............................. CAAACCAAAGGTCACTCCACTACCAACAAAAACACC 1169083 30 100.0 36 .............................. TCAACGCCGACAAAAAACATAGGGTCGCCATACTTA 1169149 30 100.0 36 .............................. TCATACAAAAAACAACTCATCTAAATTTAAAAAGAA 1169215 30 100.0 36 .............................. TCAAAAAAGGAATGAGCGTAGCGGAATTTTTAAATT 1169281 30 100.0 34 .............................. TGCCTGTTATATCATTAGCAAAACTTATATTTGA 1169345 30 100.0 35 .............................. GCTCCCTCTTTATTTTTTTCATCTCTTTTTTTAGC 1169410 30 100.0 35 .............................. GCGTTTAGGATTTACAAGAGGTTGTGCAAATTACG 1169475 30 100.0 34 .............................. ACTGGGTGCTTAGTAGATATGACCTGAATGAGTT 1169539 30 100.0 36 .............................. TAATTCCAAAATAGAGAGCCTATATCCACAAGCTAG 1169605 30 100.0 34 .............................. TACGAGAACGAGGAGCTATTAGTAGGAGAGATGA 1169669 30 100.0 35 .............................. GACCCAGCCAAATAAACAACGATAGAACTCTCAGA 1169734 30 100.0 37 .............................. AAAGTTTCAATGCTCATTTTTAATCCTTTTTTGATAA 1169801 30 100.0 34 .............................. TTAATTGATGATTTTTATTTTCTTTGTGAAATCT 1169865 30 100.0 34 .............................. TTTTGCTGATTTGTTAGACTTCCCCTTGAACTTC 1169929 30 100.0 35 .............................. CTTTTGGTTATGGAGAAAAAGAGGGAAAAGAGGTT 1169994 30 100.0 35 .............................. ATGGAAATGTTAGATAATAAAAACGTCACAACAAA 1170059 30 100.0 35 .............................. ATTTCTATTTTGTAGGTCATATGTGATTTTTGATA 1170124 30 100.0 37 .............................. GCAAGATAGATAGCTTAAATGATGAGCTTAAAGCGTA 1170191 30 100.0 35 .............................. AGCGGTTGGGAGCATTTTCAATTTTCTAGCTTTGA 1170256 30 100.0 35 .............................. GAAATCATCAAAACAACGCAAGATGAGTTCAAGAT 1170321 30 100.0 36 .............................. ATAGCACTGTCTAAGCCGTTCATTTTAGATTTTAAG 1170387 30 100.0 35 .............................. TTATTTCAAATTTAGCCGATTTTTATTTGATAGTG 1170452 30 100.0 36 .............................. GATACTGTCTTGAATTTCACGTGTGCAAAGTATCCT 1170518 30 100.0 34 .............................. TTTACTTCATAAATGCTACTTAAGCATTCGTTAA 1170582 30 100.0 35 .............................. ATTCGGCGGATACCAATACAGAAGTTGCGAGGACA 1170647 30 100.0 34 .............................. AAAAATCACGCTAGGCTTAACTTCAGCGTTATAG 1170711 30 100.0 36 .............................. CAATGGCGATAGAAATGCGATAGAAACAAGAGCCAA 1170777 30 100.0 34 .............................. CTAAATAGACCAAAAGAGCCAAGCCTTGATGAGC 1170841 30 100.0 34 .............................. TCACAAAAATATTTTAAGAGAAAAGACACTCAAG 1170905 30 100.0 35 .............................. TTAGCAGGTATGCCTATCATTCCTTTATCGATGAT 1170970 30 100.0 34 .............................. GATGAGTTTCTTATATCGTTGTTATCAAAAAAAT 1171034 30 100.0 35 .............................. GTCAGCTCCAACCATATGCAAAATATTACCATTTA 1171099 30 100.0 35 .............................. CTTGCGCGACTAGAAATGAAAAAATCACCAAAACC 1171164 30 100.0 34 .............................. GTTGTGTATCAGTTTTTAAATTATTTTTCAAAGG 1171228 30 100.0 34 .............................. TTTAAAAAAAAGCGTTTGTTATATTTGCTTGAAA 1171292 30 100.0 34 .............................. ATGATCATATACGCCAAAAATCGCTAACTGGCTA 1171356 30 100.0 36 .............................. CTATCGTTACTTCATCTCTTTTTACTTCTATGTCAA 1171422 30 100.0 35 .............................. ACAAAAAAAGCTTTTAGACGAAAAGATAGAGGAGC 1171487 30 100.0 36 .............................. TAATACAATTGGCGAGTTTTGGGATGATAGCGTTCG 1171553 30 100.0 36 .............................. CTCAGACGGTGTTTCAGTTTCTGCAGGTGGGGAAGG 1171619 30 100.0 35 .............................. ATACGCCAACTAAAGCCAAAGCTAGGGCTAAAAAG 1171684 30 100.0 39 .............................. GGTCATTTAATAATCCATATGTTTTATTATTACCATTAT 1171753 30 100.0 34 .............................. CATTTCATAGTCTTTTTTTACATTTTCCCAAAAA 1171817 30 100.0 34 .............................. TCAAGCCAAAGTATATCAAGGGCGAACCTCTTCA 1171881 30 100.0 35 .............................. TCCTCTTAAAATATTTTTCTGTTTTGGTTTGTGGA 1171946 30 100.0 34 .............................. TAGCTTTGATATAATATCTATCGCCGATTATCAC 1172010 30 100.0 36 .............................. TCTATCATTTTTTAGCTCTCTATCAAACACAAAATA 1172076 30 100.0 37 .............................. ATTTGTCAGAGGCTACAAGCTTAAGCGACGTAGCGAG 1172143 30 100.0 35 .............................. TAGGGTCATTCGCAAAACCCCAGTCTGCCCCAAAA 1172208 30 100.0 36 .............................. TTTGGGAGGGCGAACTTAGAAAAAACACAAACGAGC 1172274 30 100.0 37 .............................. CGAATTTAACTTGCGTTTTATCCGCTTTGCCATTAAA 1172341 30 100.0 33 .............................. AGTTTGATAGACCTAAAATAGTGCAAATTCAAA 1172404 30 100.0 35 .............................. TTTAGCTAAAACTTCGCGGTTGCTTGGTGAAAATA 1172469 30 100.0 36 .............................. TAAATCTTGGGGCTCAATCTACATTCGGAGCAGAAG 1172535 30 100.0 33 .............................. CAAAGCCTACTTAAAGCTAAATATTGCTGTCCG 1172598 30 100.0 35 .............................. GCTGTCTACCGTTTCAGACTTTGTCTCTTGTTCTT 1172663 30 100.0 34 .............................. ATTATGAAGCATTCACAAAAACTGACCTTCGCTA 1172727 30 100.0 34 .............................. TTGGTATAGCCGACAGTTGTATCGGTTTCCTTGA 1172791 30 100.0 36 .............................. TCTCTTGAAAATTTGTTTTATTTTTTTCATCATTTA 1172857 30 100.0 37 .............................. AGCTTTAATATTCAAATAGAAAATATCACGTATGAAA 1172924 30 100.0 37 .............................. TTTTGTTTTAGCCAAATAGCGAAGTCTTGAACTTTTG 1172991 30 100.0 35 .............................. AGCCGACCAAAAAATAGAAGTTCCAAAAGAGTATG 1173056 30 100.0 34 .............................. GTATTTAAAGGGACGTAGGCATAAAGCAAAGCTA 1173120 30 100.0 36 .............................. CGATATAATCTTTGTTATATCTTCTTATAATCTCAA 1173186 30 100.0 36 .............................. CGTCAGCTGTTTCACTAGCGTTAAACTTCGTTTTTC 1173252 30 100.0 34 .............................. CTGGGCGTGAGTTTGGCTTTGCGCCATATGGCAA 1173316 30 100.0 35 .............................. TCGCTTTGTAGTCTTTGTAGGCTTTGTAACCTTTG 1173381 30 100.0 34 .............................. TTTTTTATCCTTATTTGATTTGGTTTTATTTATT 1173445 30 100.0 35 .............................. ACCGATAGCGTATATCAAGAGGTAGAACAAGAGTA 1173510 30 100.0 35 .............................. TTGATTACCACCTGCAATATTGCCACTATTGTTTA 1173575 30 100.0 34 .............................. TTTCTACAAGTTCTTTGCCTTTACTTGTTAGCTC 1173639 30 100.0 37 .............................. TCTCTTTTGGTTTAGCTTCGTTTATCATAAGCTTAGC 1173706 30 100.0 33 .............................. TGGCATCGCTGATAGTTGCATCGGCTTCCTTGA 1173769 30 100.0 33 .............................. ATATCATATCGGCGAAATTAGAAAAATGTATTT 1173832 30 100.0 38 .............................. AAAAATCGGCGATTATGAAACAAACAAAGAAACAATGC 1173900 30 100.0 33 .............................. AGATGGGAAGTTTTATCAAAGCTTAACCGATAA 1173963 30 100.0 37 .............................. ACAGTTTGGGCTAAGATACTTAATATCAATTTTTCAG 1174030 30 100.0 35 .............................. TCAGAGGTTTTATCCACCTTATTTAAAGCACTATC 1174095 30 100.0 35 .............................. ATCAACTGATGACTATGTGAGTGTGTATCAGTCGA 1174160 30 100.0 34 .............................. TTATCATATCTACAAACATACACAGAGCCTTCAA 1174224 30 100.0 35 .............................. CAGATGAATATACAGGCTATACCTAATCAAAGTTT 1174289 30 100.0 38 .............................. CTTTACGCACTGTGTCATCTTTACCATATACGAGCGTA 1174357 30 100.0 35 .............................. TCCTTTAGCATAGTGCCTTTTTCGCCTATAAGAAC 1174422 30 100.0 36 .............................. CTACTGGGTTTTAAGCAGATATGACTTAAATGAGTT 1174488 30 100.0 36 .............................. TTTACCGAAGCTTTGGGATAGTATGCAAGATATTCA 1174554 30 100.0 35 .............................. AAAAACTTTGATTATTCTATCAATGATTTTAATGC 1174619 30 100.0 35 .............................. CCTTAATTTGATATCTATATTATACGCATTTTTTA 1174684 30 100.0 37 .............................. AGCGTGAGAAGATATTCAAAATACAACGCTAAGAGAA 1174751 30 100.0 36 .............................. TGATAGCATCAATGCAAGTGCTATTATTATCCCTGA 1174817 30 100.0 35 .............................. GGCTACTATAAAAAGTTTGATTGATGAAAATTTGC 1174882 30 100.0 37 .............................. CGCATCTGTAGCCCCACCCATTAGATTACCGCGTTGA 1174949 30 100.0 36 .............................. GGGAGGGTATAGAGATAATAGCTCCTTACTCATCAA 1175015 30 100.0 36 .............................. ATATGTACTCAAGAAGATTACAAGTGCAGGAAAGAT 1175081 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 127 30 100.0 35 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : GCTATTGGCTCAAGTATAGTTTTATAAATGCTTTCCATATGGTTATTATAATATAAAAAAGTAAGCTCCAAATCCTAAAAAAGGTGAATTTTATACCATTTTGGGTTTAATGAGATTTTATCAATGGATTTAAATGAATTTATAGATTATTTTGAGATAGCAAAAAAAGGATAAATGAGGCTTAAAGCTTGATATCTTTATATCTTGCATCAGTTTTGCCAGTGTAAGGCTTTGAGCAGCTAAAATCAAAATGACAATAAAATTTTATTAAAGCAAAAACCAAAACCATAATAATAAAACTAAACATTTATAAGCCTTTTTTAAAAAAATACCATAAAAGGATTAAATATGTCAAATGCTACTTTAACCTTTGGAGTGGATTTAAGTGAGTTTAATACTGCTTTTAATAAAATTAACAAAACAACAACCACCCTAAGCGATGCCCTAGATAAAAACATAAAAACAGCACTAACAGCGATAAAAAATGCAAATCACAAAAA # Right flank : CAGCAACAAAAACAGCTAAATTTAGTACTTTGTACCAAGTTTTACTATATTTATTTTACTAAAAAATGGCTTAATATAGTATTTATAAAATCATCAAATAAAGCATTTAAGCTATTTTATAAATCTTAAATATAGCTTTATCAAGTTATTTAAAGCAATTTTTTTTAAGTATTTAGGCAAAGGTTGATCCATAAATAAATCTAACTTAACCATATTAAATCAAAATAAAAATAGCTATAAGGCAAATTTTAAACTCGCTAAACGCTTGTAAATTATTTTATTTTTTCATAGTCTATCAAGCCGATTATACCGTTTTCTATTTTTTTATGACAAGCCACGCAGTTTGCTTTGGATTTTACATCTTTTCTTAAAAATACTTTTTCATCTATCTTTCTATGCTTTTTTATCCAGTATTCATTTTGAGTTATGGCTATATTTTGGTCGTTTTTTGCATATTTAAGTATGTTAAATGCAGTTTTATCACCCCTTGTCTGAGCAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //