Array 1 141421-140477 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLZA010000002.1 Lactobacillus crispatus strain An726 An726_contig-115_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 141420 29 100.0 32 ............................. ATATCAGTGAAGAATTTGAACGAATCAACTCT 141359 29 100.0 32 ............................. TCCACATAATCACTCCATATTTATATATTTTT 141298 29 100.0 32 ............................. GTTTGAACCATACCTGCAGTTAATAGATTTCG 141237 29 96.6 32 ............................T AGCCTGAAGTTTAACCATGTCTGATTTACTGT 141176 29 96.6 33 ............................T CTGGCTAAAATGCCAAAGTTTGAATTACTTGTC 141114 29 96.6 32 ............................T CTAGGTTGCCGTCAGCATAAGGAACATAGCCA 141053 29 96.6 32 ............................T TAATTCAGCCAATTAAGCAACAACAACTGATT 140992 29 100.0 32 ............................. TCCCCCACTGATGAAATTCAAGCAAGGTGTAA 140931 29 96.6 32 ............................T GAAACCCGTGTCGTTCCTATGTCAGACTTAGT 140870 29 100.0 32 ............................. AACTATGCGGTAAATTGCTTCTTGCAGGTCGC 140809 29 100.0 32 ............................. ACAATCATCATCTTTATAGTTGCCTTGTATGT 140748 29 100.0 32 ............................. TATATACCGTTTTGCGCCTAGTGTTTTAAAAC 140687 29 100.0 32 ............................. AACAGAACCACCAACCCAACCAATAGAAATCA 140626 29 96.6 32 ............................T CATCATTAAGGTGATATAAATGCTTAGTTTAA 140565 29 100.0 32 ............................. CAATCGCAATCGCCAGCTTTAAGTCAAGTGCA 140504 28 86.2 0 .............A.........-..TG. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.9 32 GTATTCTCCACGTGTGTGGAGGTGATCCC # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTCTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGAAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATATCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAACTTTTAGTAAAAAGTTTTGGAGGTGCTTTTTAATGATTGATTTAAACAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3267-2749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLZA010000021.1 Lactobacillus crispatus strain An726 An726_contig-115_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3266 29 100.0 32 ............................. GTAGTTAGTGCTAAAGTTTGGGGTGCTGTAAG 3205 29 100.0 32 ............................. ACAACTGTAACTGGTAGCAATTTCAAAGTAGG 3144 29 100.0 32 ............................. AGTATCTGCCGTGACCAGCATAGACACCAACG 3083 29 96.6 32 ............................C AACAAGGCTGTTATGGCAATCATGGACATGGA 3022 29 100.0 32 ............................. AATCTAAGTTCAGATATGGAGAAAATATCTAA 2961 29 100.0 32 ............................. CATTCTAGCTGGGTTCATTTTGCGCATTAAAT 2900 29 96.6 32 ............................C TTGAAGGATGGAGCTGCTCCAGACGCTATTTA 2839 29 100.0 32 ............................. AACTGATTTAGTGGGTGCAGTTCTGGATTGAG 2778 29 82.8 0 ...........AC....T......T.A.. | A [2757] ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.3 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACGTACACTATTGTAGCTCAGCAGTTTTACGATAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGACAGACAAATAATATTTTTCTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCTAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAATTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAACA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1609-2247 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLZA010000050.1 Lactobacillus crispatus strain An726 An726_contig-115_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1609 29 100.0 32 ............................. CACGACTTCGTGATTGATCCAATTACGCATGA 1670 29 100.0 32 ............................. GAGGGTATGACTGTGCTTGACAATACAATGGG 1731 29 100.0 32 ............................. TTTTGGGTGGTACTAGCAAGGAAAAGCGTCAA 1792 29 100.0 32 ............................. AATCGGTAGTTGTATTAAATAATTTAGCGATT 1853 29 96.6 32 ............................C AAATATTTCTCTGCTGAATCACCAAGTCAAGG 1914 29 96.6 32 ............................C TTCTAATGCTGCATCATTAACTTCAGGTGCTT 1975 29 96.6 32 ............................C GAAGTCATCAATCGGATCAAATTGACATACTA 2036 29 100.0 32 ............................. CACTGATCCAGAATCTGGTGGTTTTGCATATG 2097 29 96.6 32 ............................A CGCTCCAGCACTTTGAAGGATACCACCGGCTT 2158 29 96.6 32 ........................G.... GAGCCTTCCTGACGGCTGACTACGTGACACTA 2219 29 79.3 0 .............GA........T.AGT. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTGATAACGACATTATATCCATTTTCTTTGTAAGAGCGAATCCAATTGCTTAACATACCATTACCAGGCAAACCTAGATCAAGTGCTACTGCATTAATCGATTCATTTCCTAAAAGCACTCTTTTTATGGCATGTTCTTTATACTCTTTTGAGTAATGCGTATAAGATTTATCAAGTACTGATAAGCCATGAATTTTAATTAAATTTATTAGATAATTTACCTTTTCTCTTCTGATACCATATTTCTTACTTAAGTACGTTCCACGTTTATTTTCTAAAGTCCATTCTTCAAAAATATGAATTTTATCCTTTTTAGTTAGTTTAGACATAGTAAAAACCCTCGAGATTCATGTCCGAATTTCGAGGGTCACTACAAAATGCTTCTTTTTTATTTGGGGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTAGT # Right flank : TATATGGAGAAAGATATGTTTACAAAGCAAGAATTTAAGCCGCAGGGTTATAAGGAAAATGTCGAAAGGCTTAAACTTTTTTATCACAGTGAATTTTATCAAGACTTGAAAAAGTTATATCCTAATTATTTGAATAAAGTTGAAGATGCTTTATATCAAGATCCGGATTCTAGTGATGAATTTCTTTATATTGCATTAAGTGAAAAATATAAACTCGATGTTTCTAAGAAAAATAACTCTTTTTGTCTTATTGATAAGGTGGGAAACAGTGAAATTGCATTAGGTGCGGATGCTATTTGCGGAGTAAAATGTTTAGCTAAATACTATCCTGATCTCGATGACTGGATCGATGCTTATGAAACAATACGAAGTCAAACATCCCTGCATTTTGTATGGCCAAGACATAAATTATCAACGATCAATACTCTTAGATACATTAAATATTTGGACCGTATTGATTTTACTTTATTTGATTTAAAAAATTATTTTGAAGGTAATAA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3144-3419 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLZA010000050.1 Lactobacillus crispatus strain An726 An726_contig-115_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3144 29 100.0 32 ............................. ATCCGACCGCGAATATCGCTTTGAAAACTGAT 3205 29 96.6 32 ............................C GTTCTATCAGTATCAATTAAAGGCTTCTTAAA 3266 29 100.0 32 ............................. ATAGCCCGTGCCCTGTGTAAGCTTAATCAATG 3327 29 100.0 32 ............................. CATATAATCGTACATACGCGCTTGAAGAGCCC 3388 29 93.1 0 .......................A..G.. | C,A,A [3410,3412,3416] ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 GTATTCTCCACACATGTGGAGGTGATCCT # Left flank : CAAGACATAAATTATCAACGATCAATACTCTTAGATACATTAAATATTTGGACCGTATTGATTTTACTTTATTTGATTTAAAAAATTATTTTGAAGGTAATAAAAACACGCCGCTTGCTAGAGCTTATAAAAATGAAGTGACTAATCTATGGTTATCTCAATTTTATGATTTTCCATCCTTTGTAAAAAAGATGCAATTAGGACGTTTTGTTGATAAAAAATATAACGTTTTGAATATTGCTAGTCGGCAAAATGAAATCATTAAAAAATTTCTTGCAAAATCAGAATTATCTAATTCTATGCCTATATATGCTAACTCCCTGATTTCTTTAGTAAAAGACAATATAATTTAATGAATGACCAGGCTGAAATAATTTGCAAGCACTTTGTGTAGGTTCTTTTTTATATCGATAGATATTAAAGAAACACTTTGTGTTAAAAGCAATAAAAAATGCTATGATTTTAGGTAGGGATTGTTGCTGTAGCGGGATTCATTTAGT # Right flank : TGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAAGTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACACATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //