Array 1 26836-27103 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIM01000011.1 Marinitenerispora sediminis strain TPS83 scaffold_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26836 29 100.0 32 ............................. GCCGCCGGGGTGCGTCCGCTGCGCAGCAGGAT 26897 29 96.6 32 ............................C CCGCTCCGCCTCGACACGCTGGCGGCGGGTCA 26958 29 100.0 32 ............................. ACGCCGGGCCGGGTGCCGTGCACGATGTCGGC 27019 29 96.6 29 ............................C TGGTCGTATGTCTGGTAGATCCGCAGGCC 27077 27 82.8 0 .C........--.AT.............. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTGCGCCCCACGTGCGTGGGGATGAACCG # Left flank : TGGCGCTTCCGGCGCCGATGAGCTGGTCGTAGACGATGTCGGGGGTCATCCGCACGAGCGTGAGGCCGCGACGTCGCTGCCGGATGATCTCGTGCCCGGCGGCCACCGGGATGAGGTGGGTGAAACCCTCCAGCGCGACCGTGTCCCCGTCATGGACGAGCTCGCGGACGCCCTCCTCCAGGGAGACGATCATGGGGCGGCGTCCCTGTTCGTATCGCGAATGCATGTTCTCGAAGCGAACACCATGCGCCCGACCGTAACCCGGGGTGTGGCCCCGGTCAAGGGGCGGGGAAGCGGGGAGTGGGGTGGCGGCGGTCGAGACCGGCGGCGGTTCTGGGGTGTGCTGGGTGTGCCGCGCGTGTCGGTCCGCCGCATCTTGGGGGTGCGAGGTGTGGAGCGGCACCGGGTACGGCATCATGGCGGGGTGCTGGTCTCGCTGTTCGGCGCCACGAGTGGATTTCGTTTTGGTAACACCCTTGCTCCGCCCCAGGTCGCAAAGG # Right flank : GCCCGCGCGCTTGAGCGGCACACCTTCCTCGGCTAATACGCCCCCGCCGGACCGGCGTGCCCCCCGGTCCCGGTCAGACACGATCGTGGAATCCGTCCCCCGTGCGAGCTACGCGCAGGTGTCCACCGCAAGGTGACGATCTCGGGCCGCTGGCTCCGTAGCGTTCTCGCTGCCGCGGCGCTCCGGTCGCGGATCCGGCGGAGGAGTCTTCATGAGGCTGGTCTGGCAATTCGCGGCCGTCGCGGCGGTCGCCTTCCTCGGCGGTCAAGGGGTCATGGCCGTGCAGGGAGACCCGTGGCTCACGCTGGCCATCGGCCTGCTGACGGCGGTGGTCTCCGTGCCCGTCTACCGGTGGGTGGTGCGGCGGACCGAGCGTCGCCCGGTCACGGAGCTGGCCGGAAGGGGCGCCGTTACCGCGACCGGCCTGGGGACCCTGATCGGCGTCGCGGTATTCGCGGCCGTCATCGTGAACATCGCCTTCCTCGGGGGCTACCAGGTCC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 71-2422 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIM01000208.1 Marinitenerispora sediminis strain TPS83 scaffold_207, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 71 29 100.0 32 ............................. CCCGGACGGGTCGTCATCCGGGGCGTTCTCAC 132 29 100.0 32 ............................. AGATGATCAGCCCTCTGATTCAGGTCGACCAC 193 29 100.0 32 ............................. TGCCGCCAGCACTGGACGCAGTAGCCGAGATC 254 29 100.0 32 ............................. CAACTTTACGTTGCACTGCAACGGAACGTTGC 315 29 100.0 32 ............................. CCCCGGCCAGATGGTCGGGGCGAGGAAACGAG 376 29 100.0 32 ............................. ATGACCGCGGCGGACACCCCGGTGTACGCCGC 437 29 100.0 32 ............................. CTCTCGATGCGCTGGCCGAGGGTGCCGTGCAG 498 29 100.0 32 ............................. GCGTCGGCGTTGTCGGTGTCTGGGCAGATCAG 559 29 100.0 32 ............................. ACCGCCGGCGACCAGCTCATCTCCGACTGGAT 620 29 100.0 32 ............................. CCGCCTGACACGGGGCCTCGGCCAGCAGAGGG 681 29 100.0 32 ............................. TCCAGGGCGGGCTGGATGCGGTGCTGGGCGAG 742 29 100.0 32 ............................. ATGCCGGCCAACGTCACCGCCAGTACGGCGCA 803 29 100.0 32 ............................. GCGTTCCGCGAGTTCGTCGTAGCCGGCTTGCC 864 29 100.0 32 ............................. GAGATCCTGCGCCAGATCCGCCAGACCGGCTC 925 29 100.0 32 ............................. AGCATCGGGGCCGCCTGGAACTACTTGTCCGA 986 29 100.0 32 ............................. GACCGCCGCGCCGAACTGGCTGCGGCCGGCCA 1047 29 100.0 32 ............................. GTGTGGCCCAGCTTGCGCAGCTCCATGGGGCT 1108 29 100.0 35 ............................. AGGAGGTGGCCGTGGCTGCCGCGCTGGCGCCGGCC 1172 29 100.0 32 ............................. GCCGACCTGCGCGACACGGAGTTCGATGACCC 1233 29 100.0 32 ............................. GCGGCCGAGGACTGGATCGACCGGGCCGAGTG 1294 29 100.0 32 ............................. CGCGAGTACGAGCGCCAGTTCCTCCACCACGG 1355 29 100.0 32 ............................. CGCGCACCAGCTCGGGCAGGTTCGCCATGGCC 1416 29 100.0 33 ............................. GCGCGCGCGCCGCGCCCTGAGCCCGGAGGACAA 1478 29 100.0 32 ............................. ACCTCCTTGAGGTGATGGGCGGTCCCGAACGA 1539 29 100.0 32 ............................. GCCACCCTCCAGCAGCGGCTCCACGCCGAGCG 1600 29 100.0 32 ............................. CGTGCGCGCCTCGCTCACCGACCGCACCTACG 1661 29 100.0 32 ............................. GGTCACGATCCCAGCTCCGCTCGGATCGCGGC 1722 29 100.0 32 ............................. CCTTGGGACTGCTGAACTTCCTCATCGGCGCC 1783 29 100.0 32 ............................. CTCGCGGTGATCGAGCCGTTCTCCATGGAGTT 1844 29 100.0 32 ............................. CCCTGGGTTTATTACATGTGCCAAAACGGGCC 1905 29 100.0 32 ............................. TCGGGCAGCCAGGTCCGCACGCGAACCTCGCC 1966 29 100.0 32 ............................. GTCGTCCGGCAGTACCTCGACAGCCTCGGCCT 2027 29 100.0 32 ............................. CTCTCGATGCGCTGGCCGAGGGTGCCGTGCAG 2088 29 100.0 32 ............................. GCCCAGTTCGAGGCCCAGTTCGCCGCTGACGG 2149 29 100.0 32 ............................. ACGTCGGGCGACCGCCGGTTCGGGGCGTACAT 2210 29 100.0 32 ............................. GGCGAGTTCTGCTTCTGGTCCTTCTTGTCTTC 2271 29 100.0 32 ............................. AGCACAACGCGATGACCGGCCGACGAAGCCAC G [2293] 2333 29 100.0 32 ............................. CCGAGACGACGTAGACGTCCCACCCTGGCCAC 2394 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 39 29 100.0 32 GCCCGCCCCACGCACGTGGGGGTGACCCG # Left flank : CAAATCTCTCGCGCGGACGGAAAACAGGTAAAGAAATGATAACGCGCCACGTCGCCCCAGGTCACAAAGTG # Right flank : GTCCGTCCCAGCCGGGGCCTGACAGGTACAGGACAGCGGGACGGCCCGCACGCGCCGGTGGCATGGCTACCGCAGGCGTGGTGCGGGCCGTCCCACGAACTGTAGCGGGCATCGCGCTGGGACCCCTAGAACGCAGGCGGTCCCGGCCTACTCTGGCAGTGCGAGCCGAACAGAACAGGACGGGACCATGGGGCAGACTACCCCGACGGCGGCAGCCCTCCGCGAAGCCATGGACCGCGCTGGCGTGGGCGTGCGCGAGCTTGCCCGGCGAGTCCACTACAACCATGCCTACGTCAGCCGCGTCCTGCACGGACGCCAGCAGCCCAGCACTGATTTCTTGCGCCTGGTCGACACTGAGCTGGGCACCACACTCGCGCCGACCACGCCCGTCCCGCCAGCATCAGACCCTGGAGACGACATCGGGTCGGAGGTCGCTCACCTCCACGACACCATCCGCCACCTGGTCGCACTCGATGGCCGCTACGGCGGGGACGCCATCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCCCCACGCACGTGGGGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 6883-7092 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIM01000208.1 Marinitenerispora sediminis strain TPS83 scaffold_207, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6883 28 96.4 33 .........................C.. GGTCCGCCAGCAGAAAGAGATCGCCGCTGTCTT 6944 28 96.4 33 ................C........... GTACTTCAACTTCCAGATCGATGACATCGACCC 7005 28 100.0 33 ............................ TTGACGCGGCAGTATCTTGACGCACCATCACAC 7066 27 75.0 0 .T...-.....C.......A....TGG. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.0 33 GCCCGCCCCACGCACGTGGGGGTGAACC # Left flank : TACTCCCACGAATGGGACTCGCCTGAGCGGCCGGCCGAGCTGGGCGCCTACGTCGCGGCCGACCTGCTGCGCAAAGGGGCGAGAGGGATCATCGACGGCATCCCGCACTGAGCGAGGAACTGTCAGCACCAGGCGGTACCGTCACCCCGCAACCACCCCCCAAGGAGGGGCCATGGACTTCATCGCCGCCTACCTGGCCGAGCACCTGTCTCCCAGCCAGCTCCGCGAGCTGGCCGATGACCTCGACAATGTGGAGCGGCGCGCATGGCTCACCCGGTGCCTGCCAAATGCGGCCGACGACGCTGCCCGACACGCTGACACCCGCCGGAGCATCCGCGCGGCACGGGACGGCCTGACCGCAGCCGAGATCAGCGAGCGGCGGCGAGCTGCGCGGCGACACGCCCGTCCGGGCGGGATCCTCGGGGCCGTGATCGCGGCCGAGGAATCCCGCATCAGTCGCCTCGCGGAGTACGACGGCCGGCCCTACCGGGCGACCGCCG # Right flank : CCGTTCGTGCCTACGCTCGGCCCACCGTCAGCGGAGGCCGCGCATCCGCAGCACCCTGAGTGCCACCATCAGGTCCAGCCGCAGGTTGGGGTCGGTCGTGAACGGGCCCAGCATTCGTTCCAGTTTGCCGATGCGGTACCGCAGGGTGTTGTAGTGGAAGTGCAGCACCCGCGCCGTCTCCGCCACGTTGAGGTTGTTGTCCAGCAGTGCCTCCAGCGTGCCGCGCAGGTCTGCGGCCTCCGCGTCGTTGGGGGCCGCGAGGGCGCCGAGGGTCTCCTCGGTGAAGGAGCGGAGTTCGGCGCCGTCTGGGACGAGGCTGATCAGCCGGTAGACGCCCAGGTCGTCGAAGTCCGCGACGGCGCCCACGCCGTGGATCTGGCGGCCGACGCGGGCCGCCTGCTTGGCCTGCTCGTAGGCGGCCGGGATGTCCTCCGGCCGGGCGACCACCCGGCTGACGCCGGTGGCGAACGGGCGTCGGCCGCCGCCGCCGTCGCCGGAGA # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCCCCACGCACGTGGGGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 87% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.50,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28630-26716 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIM01000038.1 Marinitenerispora sediminis strain TPS83 scaffold_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 28629 37 97.3 35 .......T............................. TGCTCCCCAGCGTCGCCGCAAGGACCGGCGCCAGG 28557 37 97.3 36 .......T............................. GGCTCGGCGACCGGCGGCTGCGGCCCGGCGACGAGG 28484 37 97.3 35 .......T............................. GCCTCCTGCCGCAGAGGTCGAGGGGGCTCGGACCG 28412 37 97.3 35 .......T............................. ACCGAGCGACTCGCGGCGGCCGAACAGGCAGCGGC 28340 37 97.3 35 .......T............................. CGACGCTTGGAGTTCGAGCTCGCGGGCCTCCCGGG 28268 37 97.3 37 .......T............................. CCCGGGATCTCAGGTCCGCGTAAACGGTGTCACGGGC 28194 37 97.3 34 .......T............................. GAGCAACAGGCCGGCTACCGGCTGTCGGGGGAGC 28123 37 97.3 35 .......T............................. GTTGCCGGCGGTCGGCCACAGCTCGATCGTGGCGG 28051 37 97.3 34 .......T............................. GGCCGGATGCAGTACCAGGACGACCGGGTCTGAG 27980 37 97.3 35 .......T............................. TCCGTCATGATGTCCACGATCTTGACCGTCTCCCG 27908 37 100.0 35 ..................................... TTGGGCTCGACCAGCCGGGAGCGGGTGCGAGGGTC 27836 37 100.0 36 ..................................... GGTGAACGCACACTCACGTCTCTGACCTACGCCGAC 27763 37 100.0 35 ..................................... GCGTCAAGAAACCCTGACAAGCGAGAGGAGTCGAT 27691 37 100.0 35 ..................................... GTGACGCCCTGGTGGCGCTGATTGAAGAGCTCAAT 27619 37 100.0 37 ..................................... GGCCCCTCGACGTGCCACGCCTCGCCGGCGCGAACGA 27545 37 100.0 35 ..................................... AGGGCTCCTCGTCTCGGTCATCTGCGCCCTGGCCG 27473 37 100.0 35 ..................................... GATCGAGGTCTACCTGGACGACGAGCTGGTGGAGT 27401 37 100.0 35 ..................................... CTCGGGGCTCATGCCTTCGGCCGTGGCCTGGGTGT 27329 37 100.0 35 ..................................... CCACCTCGTGCCCTGGTGACGTGCTGCGCGGCATG 27257 37 100.0 38 ..................................... GACTGTTCCAGCCTCATGCAGTACGCGTGGTGGCAGCA 27182 37 100.0 35 ..................................... TCGACTGACAGCCTCTCTGTCGCCGAGCAGGCGTA 27110 37 100.0 35 ..................................... TTGGAACCAGCACATCGACGCACTGTCGATATGCG 27038 37 100.0 34 ..................................... GCTGGATAGCCGGCACGGCATCGCCATGGTGCGT 26967 37 100.0 34 ..................................... GCCCCTCCTTCCGGAGCCGGTCGTAGGCATCCCG 26896 37 100.0 35 ..................................... GTCATCGACCACACGGCGTGGAGCGACGGCGACCG 26824 37 100.0 36 ..................................... CCGGAGAGCCACCCCGGCTACGACGAGGACGCTCCG 26751 36 86.5 0 .G............T....A-............T... | ========== ====== ====== ====== ===================================== ====================================== ================== 27 37 98.5 35 GTGGCAGCCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Left flank : TCCTCGCCCGCCATCTGCGCGGGGAACTCTCCGACTACCTTCCTTGGATTCCGGCGTGATGCAGCTGCTTCTCCTCACCTATGACGTCAACACCACCACACCCGAAGGGCGGCGCCGGCTCCGGACGGTGGCCCAGATCTGCGAAGGGTATGGCCGGCGTGTTCAAAAGTCGGTCTTCGAGATCATCAGCGACGAGCCTGGGGTGTTGACGTTGATCGACCGCATCGGCCGCGTGATCGACGACGAGGCCGACAGCATCCGCGTTTACCGGCTTCCGCCTGACGGATTCACGGTGGTGCGCACCCTCGGGGCCGCCCGGGCGGTTGGGCACAACGACGCGATCATCATCTGATGAACGCCTTGGCCTCTGCTTGGGGACCTGAAGTGAGCAGAGAATCCCGGGGAGGTTCCCAAGCGAAAAACGGACGAAAGGGTTCGAATGGAAGCCGTGAGAACATGGGGCGCGCCTCAGCGTGGCGCATCTCCCCTGTTCAGGCGGC # Right flank : GTTCCGTGGTCAGGGTTCTGGTAGACGTCGGCGTGTGGCAGCCGCCCTTCGGGGATCACTTGCGATTGCGGCCTTTCGTCCTAAACACACGGGGCCCGTCGGACGCGTGCAGGTCAGGACGACTGGTGTGCAGTGACGACTGCTTCAAGAATGTGATCCGATGATGCGGGCCAACGCCTCACGACGCAGGCGTTCGTGTGCATCGCGCGCCGAACTCAACAACCGCAGGACTTGGCGTCGGTCGTCGTCCTGTGCTTCCGCGTACAAGACCGCCGCGCGCTGGAAGGCATGCATCGCCTCAAACATTTGCTGCACCTCGCGGAGTGTGAGGCCGAGGTTACTCCACGCCCCCGCTTCGCGATGAAGGTCGCCGATTTGTTGGTAGAGGTCGCGGGCGCGTTCGTGGACAGTGATGGCTTCGTCGTAGTGGTGGACGGAGCGGGGTGTGAGGCCGAGGTTGTTCCATGCGTCGGCCTCGCTGTGGCAGTCATCGATTTGTT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Alternate repeat : GTGGCAGTCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.70,-18.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 1260-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIM01000373.1 Marinitenerispora sediminis strain TPS83 scaffold_372, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1259 29 100.0 32 ............................. GCGATGACGCAGCGCGGCCTTCTACGTCGCCA 1198 29 100.0 32 ............................. CGGATGACCTCGGCGTCCTGGGTGTCCGTCTG 1137 29 100.0 32 ............................. ATCGGGAGCAGCACGCTCATGGCGAGGGTCTG 1076 29 100.0 32 ............................. CGCCGCACCGCCCCGCGCAGCAACGAGCAGCT 1015 29 100.0 32 ............................. TCCTACGTCTCCTGCAGGGCTTCCTCGATCTG 954 29 100.0 33 ............................. TCGCCGGCGTGGCGGGCGAGCATGTGCGCCTCC 892 29 100.0 32 ............................. GACACACCGTGGCCGTGACGGCGGAGCTCGCG 831 29 100.0 32 ............................. TAGTCGGGGTAGTGGTCGTGGTGGATGTAGCC 770 29 100.0 32 ............................. CTTGCTCCCGCGCCCGAATAGGCGGGCGAGTT 709 29 100.0 32 ............................. TCGGGCATGGGCGCGCCCGACGCCTTGGCGTC 648 29 100.0 32 ............................. GAGCGCTACGACGACGTCGCCGACCCCGTGTA 587 29 100.0 32 ............................. GTCTCTCACGTCAGCGCTCCAGTCAGCGTTGG 526 29 100.0 32 ............................. GCACGACCCGGCGCGGCTACGCCGCCCGGCAG 465 29 100.0 32 ............................. GTCAACTGCTGCAAGTTGTTGCCCGCGTTGTG 404 29 100.0 32 ............................. TTGTGCGGGATTTTCATGGGGGGCCTGGGGGA 343 29 100.0 32 ............................. GGGCATGTCGCCCGTTCGGGCCCACTCTTGGA 282 29 100.0 32 ............................. TCCGCGGCGGCGCGCCTCGTCCTCGGTCATCT 221 29 100.0 32 ............................. ATCCGGTTGTGGATCACCACTCGGGATCTCGT 160 29 100.0 32 ............................. CCGTACCTCAGGGAGACGGCGCCCCTGATCGT 99 29 96.6 32 ............................T GCCCCGGCGGTTTCCTGATCGAGGTGCGTGAC 38 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.7 32 GCCCGCCCCACGCACGTGGGGGTGACCCG # Left flank : CAAATCTCTCGCGCGGACGGAAAACAGGTAAAGAAATGATAACGCGCCACGTCGCCCCAGGTCACAAAG # Right flank : TCAGCCACCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCCCCACGCACGTGGGGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 405-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIM01000444.1 Marinitenerispora sediminis strain TPS83 scaffold_443, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 404 28 100.0 33 ............................ TGCCCCGGCGGTTTCCTGATCGAGGTGCGTGAC 343 28 100.0 33 ............................ TCAGCCACCCGGTACACCGGCTCCTCCCCCGGC 282 28 100.0 33 ............................ GCGGCGGCCCTGCGCCTGCAGGCCCATGAGGAG 221 28 100.0 33 ............................ GACCAGGAAAAATCACCGTGTGCACACGACTTC 160 28 100.0 33 ............................ GCCGTCTCCGCATGACAGGCAGGTCCCGGACTC 99 28 100.0 33 ............................ TGCCCCGGCGGTTTCCTGATCGAGGTGCGTGAC 38 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GCCCGCCCCACGCACGTGGGGGTGACCC # Left flank : | # Right flank : CTCAGCCACCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCCCCACGCACGTGGGGGTGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 281-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIM01000482.1 Marinitenerispora sediminis strain TPS83 scaffold_481, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 280 29 100.0 32 ............................. CGGCGCCTGTGGCCGCTCATGCGCGATGGCCA 219 29 100.0 32 ............................. CACGTCAGCGGCGCGCTCCACCTCGGCAGCGG 158 29 100.0 32 ............................. TCCCGCATCTCCTGGACCCCCTGCAGCAGCGC 97 29 100.0 32 ............................. GACTTCTCGACGGGCGGCCCCGACGGCGGCCT 36 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 CCAAGCCCCGCAGGCGCGGGGATGAACCG # Left flank : CACCTCGG # Right flank : GACCGCGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6107-6806 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIM01000047.1 Marinitenerispora sediminis strain TPS83 scaffold_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6107 29 100.0 32 ............................. CCGCGGTACTTCGACCAGATGTGCAGCACGAA 6168 29 100.0 32 ............................. CCGTCCTCGTCGCCTTGATCTTCTGCTGGAGG 6229 29 100.0 32 ............................. TCCACCCGTTCCTTCCACGTGAACACGAACGG 6290 29 100.0 31 ............................. CGGCTGCTGCGGGCGGTGGCGGGGAGTCCCC 6350 29 100.0 32 ............................. TGCGGCCGACCAGCTCGGGGAAGACCCGGCCG 6411 29 100.0 32 ............................. CAGGTGGTGAGCACGCACCGGATGGTGTAGGT 6472 29 100.0 33 ............................. ATGTCCTCGACCCGGACCGGGGCAGGGGCCGGC 6534 29 100.0 32 ............................. GAGAACTGACCCATGGCAGGACGCGACGGCTT 6595 29 100.0 32 ............................. GCGGCTCGGGACGTTCGTCCCGGGCCGGTTCC 6656 29 100.0 32 ............................. CCACAGGTGGTGGCTCATGGTCGGATTCCCTT 6717 29 100.0 32 ............................. GGCACGACTGCCCGCGATGCGAGCAGCCCGCC 6778 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTCCGCCCCACACGCGTGGGGATGAACCG # Left flank : CCCACAGCGCGTGACGGTTAGGGAAATGCCGGTACACCGTCCCGACTCCCACGCCGGCGAGCCGGGCGATGGCGTTGAGTTGCAGCGAGTCGTCACCGGCGGCCAGCTGTTCTCGGGCGACCTGCAACACCCGGGCACGGTTACGCGCGGCGTCCGCCCGCAACGCCGGCCCCTGCCTGCCTTTCGGTGTCACGGGGCCAGCTTAAGGGGCCCTCCGGTCGTGGCTCGGTGACCGTCCTCGTGGATCAGGCGATCCATGGCCGTGGAGATGCGAGTGCCCGACAAACCGCCGACGCAGGATGGCAGGGCAGCTCCGCCCTCCATCCACGCCCCGCCCCATCGGGCTCGCCCGAGGCATCACCTCAGCAGCACGACGGCTCCTGTCGGATGGACATGACTGCGATGACGTAGGGTAGTGAAGCGGTTCCAAAGTCCTTTGCGACGGGATGGAATACGGTCGCGTTTTGGTAACGGACGCGCTCCATCGCAGGTCGCAAAGT # Right flank : CCCGCGGCGACCGCCGGTCATCCACAGGTCTGCGGTCGGCCTGGCGCCGACGCCAGCGGGCGGCATCCGGGGAGGACCATGGGCCGCTGCGCGCGGCCGCACCCCGCAGGGGGCACAGCAGGGGCCCCGCCCATCGGGCGGGGCTCCGTTTGTGATCTGCAAACCGGATCAGCGCCCGGAGTGGAGCGGGGCGCCGCCGGCGCCCTACCGGGCCTGGCGCTCCCGGGCCCGCTCCTCGGCGGCCTCCCGGACGCGGCCGGGTGGGGACACTTCTGCGCCGTGCGGCCGTCGGTGCGTAGCGTGGTGCTCCCCTTGATGGTCGGAGGTCCTGTCATGGACAAGGAGTTCTTTCGGCTCTATGCCTTGGCCGCGGCCGGGATGCTCGTCGTGCTCTTCCTCGTGTTTGCGGTCATGGAGGAGACCGGGCCGTGGCCCTTCGTCCTGCTTCTGGTCGTCCTCGGGATCGCCGCGGCCGCCGAATCAAGAGGGAAGAGGAAAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 1440-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIM01000015.1 Marinitenerispora sediminis strain TPS83 scaffold_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1439 29 100.0 32 ............................. TTTCGTGCATGCAGCGCACGATACACGTGCAC 1378 29 100.0 32 ............................. CTGGGCTTGGATCCGGTCCACTTGGTCGCGAG 1317 29 100.0 32 ............................. CAGCCCACCGCGATGCTCGTCGCGAGGGCGAC 1256 29 96.6 32 ............................A GCGGCCCCAACAGAGACCGCTCCCTACACCGG 1195 29 100.0 32 ............................. GTCGCCCACGTCGTGGTGTCGCCGGAGCGACG 1134 29 100.0 32 ............................. TCCGTGGCGAATCGCGGCGTGCCGGGCCGCGT 1073 29 100.0 32 ............................. ACCGTGGCCCGCATGTACGGCACGCCGGCCAT 1012 29 100.0 32 ............................. AGTCCGGCGGCCGTGGAGACCCGACGAACCGA 951 29 100.0 32 ............................. TCGTGCGGGGCGCTGGTCGCGTAGTCGCCGAG 890 29 96.6 32 ............................C CGGACCTGCGGGTCCGGGCCTACGTCCAGTTC 829 29 100.0 32 ............................. CTCCCGGTCCGCGCGCTCGGCCATGACCCGCT 768 29 100.0 32 ............................. TACCTCGTCGGCGTAGGCGCTCGACTGGTTGT 707 29 100.0 32 ............................. CTGGTCGGCTGGCACTCGGCCGTCAGCGTCGA 646 29 100.0 32 ............................. CACTACATCAACGAGACCTACATGTTCGGTCG 585 29 100.0 32 ............................. GGGTTGACGACCTCAGGGTCGGTGGCCAGAGT 524 29 100.0 32 ............................. AGGTCGCCCGGGGTGAACTCCATGCCGGACAG 463 29 100.0 32 ............................. GGATGGGGCGTCACCCTGCATGACGCCCTTTC 402 29 100.0 32 ............................. CAGTGGAACGGCGGCATCCCGCCCCGCACGGA 341 29 100.0 32 ............................. CGCGCCGCCTACGTCCGCAAAACCATCGAGAA 280 29 100.0 32 ............................. CTGTTCAGAGGAATCCGTCGACTTAGGGAGCC 219 29 100.0 32 ............................. GATCTCCACCGAGCTGGCGAGCGGGATCGGGG 158 29 100.0 32 ............................. TCCGTGATGGCCGTCGACATCCTCCGCAAGGC 97 29 100.0 32 ............................. GACTTCTCGACGGGCGGCCCCGACGGCGGCCT 36 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 CCAAGCCCCGCAGGCGCGGGGATGAACCG # Left flank : CGTGATGGACGAGGTGGAGGCGGCGCTGGACGACACCAACCTGCAGCGGCTACTGGTGATCTTCGAGGAGCTGCGCTCCACGTCGCAGCTGATCGTCATCACCCACCAGAAACGCACGATGGAGGCGGCCGACGCCCTGTACGGCGTGACGATGCAGGGCGACGGCATCTCCCAGGTGATCAGCCAGCGACTCGACCGCAAGGCGGGCTGACCTCCCGATCCGAAGCCAGCGATCGACCGGGCCGCGACGCGCGTCCTGCGGACAGAGACGGTCCGCGATTTACGCGGTTCCGAAAGCATCGCGGACAAAAGCCGTCCGCATCTCGCCTCAGTATGCGGCCCGGGCTCTTCGGTAGTGAGGCCATCTCCTACGCCCTGCCAAGGCGGTGACCTGCGGCTACGCGCCCTCGCGCCGAACAGTGGTAGGAAAGGGGCGGGAGGCATCGATGGCGTTGGGATTGCGTTACGATAACGGACTGGATCGCCGCAGGTCATTCAGT # Right flank : GACCGCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3-214 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIM01000515.1 Marinitenerispora sediminis strain TPS83 scaffold_514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ............................. GACTTCTCGACGGGCGGCCCCGACGGCGGCCT 64 29 100.0 32 ............................. ACCGCGTCGCGCCATCAGGCCGCCACCTCGGC 125 29 100.0 32 ............................. CGGCGCCTGTGGCCGCTCATGCGCGATGGCCA 186 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 CCAAGCCCCGCAGGCGCGGGGATGAACCG # Left flank : GCC # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5670-4261 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIM01000078.1 Marinitenerispora sediminis strain TPS83 scaffold_77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5669 37 100.0 36 ..................................... TCGCAGGCCAACAGCGGTCCCGGACTGTCCGACCAG 5596 37 100.0 36 ..................................... CCATCAGGAACTCGCGGCTCTCCTTGCGAGCACTCG 5523 37 100.0 35 ..................................... CACCAGGGAGAAGTCGGTGTAGTGCGCGTTGAGGG 5451 37 97.3 35 ....................T................ GCCGGCGGGGCCAGGTGGACCGGACGGCCCCGGCG 5379 37 100.0 36 ..................................... ACTGCTCGATCTGGTTGGTTGCCGTCCGGCACCCGA 5306 37 100.0 35 ..................................... TCAAGAAGCAGCGACCGTGCGGGCTTCCACGCGAC 5234 37 100.0 34 ..................................... AGGTCCGTGCGGCGCAGCAGCGGCGGAGGAACCG 5163 37 100.0 35 ..................................... CAGCACCATCTCGCGGAACTCCCCGTCCGTGACGG 5091 37 100.0 35 ..................................... CCCGGCCCGAACTGCCGGCCGGGTGGAGCGCCGAG 5019 37 100.0 35 ..................................... ACTTCGAGCAGCGCCTCAACGCGGCCCGTGCGGGC 4947 37 100.0 35 ..................................... GCTGGCGCGGTGGATGGCGGCCTCGACGTCGGCGG 4875 37 100.0 35 ..................................... GAGGCCGAGGCGGGCTACCGGCTGTCGGGGGAGCA 4803 37 97.3 35 ...............G..................... GGGCTGACGAAAGGGCTGGAGGTGGACACCGGGGG 4731 37 94.6 36 ........T......G..................... ACGAACTGCGTGATGGACTGCCCGAGGATGTGCAGG 4658 37 100.0 35 ..................................... CTGCACACGCGAGGTGTGGCGCTGGTCCACGAACT 4586 37 100.0 35 ..................................... GGCGCTCTCACCCTGCGCGGCCCCGACTGGCCCGT 4514 37 100.0 36 ..................................... GGCCTCACTATCTGCGCGATCATGATGATGCTCGGC 4441 37 97.3 37 ..............T...................... CTGGACCTCGCCGACCTCGCACCAGTCGAGGGCGGAG 4367 37 97.3 34 ..............T...................... CGCAAGCCCTGTTCGGTGAGGCCGATCTCGTCGG 4296 36 78.4 0 ......A...T...T...A.AC........C.-.... | ========== ====== ====== ====== ===================================== ===================================== ================== 20 37 98.1 35 GTGGCAGCCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Left flank : AAGCTCCAGTCGGCGGGCTGGCGAACCATGCCGAATTCCGGTCCACCGGTAGGTGCAGGAGCGGACGCTGTCGGCCCCGCCCAGCGGTTGTACGCGGCGTTGCGCTCGCACGGCGTGCACCGGATCTATGGAGCGGTGCACGTGTCGGTGTCGGTGCTGTCGCTGCCGAGCGGGATTACGGTGTGGTGCCGGAGCGGGGTCTTCGAGTGGAGTAGCGTCGGCGGCGGTAGGACGGTGGTTCCGGCGGCGGATGTTCAGGAGGTGGTGCGTTTGCTGTTGGCGACGCTGCACACGTGAGGGCGTGGAGTGTATGTCGGCGGTTAAGGGTTTCGCGTCTTTCAAGGAAGTATGGAAAGGTCTGGGTTGGATGCTTGGGGACCTCTAGTGGTCAGAAAATCCCCGGGAGGTTCTTAAGCATGAATTGGGCACAGGGGTATGAAATTCCCCGTCTTGCAGCTCGGCGAATGGGTTCGTGCTCACGAAACCGCTGGTCGAGTGCC # Right flank : CTGCCTTACACCGGGCCTGCCCACCTGCTCTATAGCACAGCACTCCTCGCAAGAATGGTGAATTGGGAAAACCACTTCTCAGTTGTCCATTTCAGGTCACGCTGGTTCCGTGTGGCTCTGATTGTCTCTGGGGTGTCTTACCTTTCCTTCCGGTGCTCGGGAGGAGGGGAGATGGTGGGAGAACTTGTCGCGCACAGCCCGAACAGCGACGGGCAATGGCATTCGCTTCGTGATCACCTTCGTGGAACGGGGGATTTGGCATACGAATATGCGAAAGCGTTCCAGTCGGGCGATTTGGGGCGTTTTCTTGGTCTGGCGCACGATGTCGGCAAAGGAAAGCCAGTCTGGCAGGACGGTCTGGTATGCGTGGCTGGTGCCGATCGGCCGGTTGGTGTTCCCCACAAGCACGAGGGAACGTGGTGGGCGGCTCGCCATGCCGGGGTGTGGTCGGCCGTGGTGCTGGGGCACCACGGCGGGTTGCCGGACCGGCAGGACCTCCA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.70,-18.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 10760-9388 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIM01000180.1 Marinitenerispora sediminis strain TPS83 scaffold_179, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10759 29 100.0 32 ............................. CGGCGCCTGTGGCCGCTCATGCGCGATGGCCA 10698 29 100.0 32 ............................. GCATCCACACCCCCATTCGTCTCGGCAGTGGC 10637 29 100.0 32 ............................. CACCCGATCCGGATCCGGGTCCAGGCCGACTC 10576 29 100.0 32 ............................. TTGGGGCGGCAGTTCCGCCTGTCTGCACGTCG 10515 29 100.0 32 ............................. TGCGGGGTCGCGCTCCTGCTCGCCACGCAGGA 10454 29 100.0 33 ............................. ACGACGCGGGCGCCGGCAGCGGCCGACGTCCGC 10392 29 96.6 32 ............................C CGTGCGGGGGCGGTGCGCGGTCCTCCTCAGGG 10331 29 100.0 32 ............................. TTCGGCCGCACCGGGCTCCGAGGTCTGCCGAC 10270 29 100.0 32 ............................. GCAGGACTCGGCTGGAACATCCTCCGGGGCGT 10209 29 100.0 32 ............................. CAGTGGGGAACGAGCGTCGCGACCATCACTCG 10148 29 100.0 32 ............................. ACCCCAACCCCGCTCTCAAGGCAGCGGCGGAG 10087 29 100.0 32 ............................. ACCCCAACCCCGCTCTCAAGGCAGCGGCGGAG 10026 29 100.0 32 ............................. GGCATCGCCTACGCGGTGGGCATCGCCGATGA 9965 29 100.0 32 ............................. CAGAGGAACAGGGCCTTCGATCTCATCGGGCT 9904 29 100.0 32 ............................. CGTGACGAGTTCGGGCGTGGGCTGGTAGGCGA 9843 29 100.0 32 ............................. TGCGTTCGACCACCTGCCACACCGGACTGGCC 9782 29 100.0 32 ............................. CCGCGCGAATCGACGCTCGGCTCGACAGGCTG 9721 29 100.0 32 ............................. CCCACGACCTCACCAAGTCCGAACTCGTCAAC 9660 29 100.0 32 ............................. CCCTCCACGGCCGCCGAGGTGGCCACGGTCAC 9599 29 100.0 32 ............................. TGCCAGTGTCCGCCGCTCCATGGCGCGCACCA 9538 29 100.0 32 ............................. GCCGGTTGCGGCTCGGCGGCACGTAGACGAAC 9477 29 100.0 32 ............................. TGGTGGGTGCCGGCCACCATGGGCGCCGCGCA 9416 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.7 32 CCAAGCCCCGCAGGCGCGGGGATGAACCG # Left flank : CACCTCGG # Right flank : GTCTCGGCGGCGTGGCGCGCACAGGCCGGACCTCCCGCACCCCCCGACGGCCGGCCGCGCATCCCCCTCCAGACCGGGGCCGGCGCCAACCCCGCCCCCGGCGCCGGGGGCGGTTCGCGACCCTCGTAAAGTGGACGGGTTGCCGCAGCTCGGGCCGCAGGTCCGGGCGGGCACGCGGTACCGAGGGAGCGAAGTCCGGTGTGAATCCGGCGCTGTCCCGCAACTGTGACGCCCGCCGACGACGGCGGGACGAGCCAGGTCGCCTCCTTCGGACACCGACGATCGCTGTCCTCGTGGGAAGGGCAGTCCGTCCGCACCGGACTCCGGACTCCCCCCTACGCCCCTGCCTGTACCTGGAACTGAGGAGTCCCGTGCGCGTGCCACGCCGCCTGCTCGCCGTCCCCCTGCTCACCGTCCTCGCCGTCTCGGGCTGCGCCTCCGGCGCCCCGGAGGAGACCGAGGCCGCCGCACCGTCCGCCGGTTTCCCGGTGACCGTCACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [15.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1807-315 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIM01000157.1 Marinitenerispora sediminis strain TPS83 scaffold_156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1806 29 100.0 32 ............................. GTTTACGCGTCGCCCAGTTCATCTTTGAGATG 1745 29 100.0 32 ............................. ATCGCGCGCATGACCGGGCTCACCGACAGGTC 1684 29 100.0 32 ............................. TGGCGCACCGAGCGCGAGAAGCGCCGCGCGGC 1623 29 100.0 32 ............................. CGCTGCGGACCATGGCGACGCCCCTGTTTCAG 1562 29 100.0 32 ............................. CTGGAGACCACCCGCTATTGGGACCGGCTGCA 1501 29 100.0 32 ............................. TCAACGCCGGTGCCGGCCAGGAGGTGCCGCCG 1440 29 100.0 32 ............................. GCGGTCCGCGCGCTCAGCGCGACCGTTGTTCG 1379 29 100.0 32 ............................. GTTCCCGGCCGCGGACTCCAGGCTGAGCAGCG 1318 29 100.0 32 ............................. GCCCACCCGGAGCTGACTCTGGAGCGGCACGT 1257 29 100.0 32 ............................. TTCGCGCGATGTTCGGCCGAACACCAACGGAA 1196 29 100.0 32 ............................. CGACTGATCAGAAGAGAAAGGAAGAGCGAATG 1135 29 100.0 32 ............................. GCGGCCTACGTAGACCTTCGAGGGTGTGAGCG 1074 29 100.0 32 ............................. ATGCGGGTTCCTCGACCAGGCGGGAAAATCCA 1013 29 100.0 32 ............................. TGCTCTCGCGCGAGCCGATGCTGCGCTCGCGC 952 29 100.0 32 ............................. GCGGTCGTGGGGCACGACGAGTTCATCACCTA 891 29 100.0 32 ............................. GACCTGGGTGTGGTGCTGGCAGGCGGGGCAGG 830 29 100.0 32 ............................. TGCCGGAGTCGTGTCGTGTCGCAGCGACACCT 769 29 100.0 32 ............................. CCCCTTGGGGCGGCAACTGTGCGCAGTGTCCA 708 29 100.0 32 ............................. GAGCCCGTCGGCCTTTTCCGGCGGCCGACCCA 647 29 100.0 32 ............................. GGCCGCGCCTGGTGCGGCGTGCACCGGGCGGT 586 29 100.0 32 ............................. GATAGGTGATGCGGGGGACAACGTCATAAGCT 525 29 100.0 32 ............................. CCGGCCGCGCGCCCGGCCAGCATCCCCGGCAG 464 29 93.1 32 .........C..................C CCCCGACGGGTGTGCGACCACCCTCGGGGCGT 403 29 89.7 31 ...T....................AC... GGGGAACGTGGACCCGCAGATTCAGACCCTA 343 29 79.3 0 .CC...T......C.A........A.... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.5 32 GTGCGCCCCACGCACGTGGGGGTGGACCG # Left flank : GCCTCGTCGAACTGTGGGACCCGGAACGGGGCAGCGTCGCCGGGGGCGTCAACCACGGCGACGACGTGATGTGAAAGGCGACCATGGCGAACATGGTGGTCATCTCGACCTCAGCCGTCCCTGCCCACGTGCGCGGCGCCCTCACCCGCTGGATGGTCGAGCCGAGAGCGGGCCTCTACGTGGGCACGCTCTCGGCCCGCGTCCGGGAGGAGCTGTGGGACATCGTCCAGGCAACCCTCGGCGAGGGATCCGCCGTCTGCATCCACCCGGCGGACAACGAACAGCGCTTCCTGGTCCGAACGGCGGGCCCGCAACGCCGGGAGGTCGTCGACTGGGGCGGGCTCCAGTTCGTGACGATGAACCCGGTGGAGGAGGAGCAGGTGCCTATTCCGGAGGGGTGGTGAATGCGGGGAGTAATGATGTGATTACAAGCATGCTCTGAGTGGGGTGTTTTCTGGTAAAGAAATGATAACGGGCTACGTCGTTGCAGGTCGCGAAGT # Right flank : GAACGCGACGGGCTCGTAGAGCTCGAACGCGGCGCCCGCCCCACGCACGTGGGGGACCGCGCAAGGGCTAGGATTCCTGGCCGTAAACGACCGTGCCCCCCATGTGCGGAGGGAACAGCTCAGGCCGCCGCCGGCAACCCGGTGTAGCGTTCGACGCAGGTGACACAGCCCCGCCCACGCCCCCGCTGTGGGCTACCTCGTTCTCCCCGGGTGGATTCGGCCGCCCGTGGCGCGGTAGATCGTGCGGGGGACCGGTGACGTCGGGAGGCCGGTCACGGAGCGGAGGCGGTGTTCGTAGGAGCCGTCCTCGGCGGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCCCCACGCACGTGGGGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 11150-12701 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIM01000157.1 Marinitenerispora sediminis strain TPS83 scaffold_156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11150 29 100.0 32 ............................. TTTCCTACGGTGAGTCGCATGCCCGCGAGTCT 11211 29 100.0 33 ............................. GAGGCGCGCACCCGGCCCGACAGATCGGCCGCC 11273 29 100.0 32 ............................. CCGGGCTCCGACGACGACCCGTTGTTCGCCGC 11334 29 100.0 32 ............................. GCTCTGCGGTCGCCGAGGTACTCCTTGAGGTC 11395 28 96.6 32 .....................-....... GCGAGGGGGTGACCGTGGCAGACGACGAGGAG 11455 29 100.0 32 ............................. GGCCCCGCGGCTGCCACCGCGAGGCCCCGATA 11516 29 100.0 32 ............................. CGGTCGGTGATCGAGATGCGGCTCGACTCGAT 11577 29 100.0 32 ............................. TGTCACAGCCGGCGTCACGCCGGCGTCACGGA 11638 29 100.0 32 ............................. TCATCGGCCGAGGGCGGACGCGCGGCAGCGGC 11699 29 100.0 32 ............................. GGCCCACCGGCGTCGAGCGGTTCCCCAACGAG 11760 29 100.0 32 ............................. GTCACCGACGCCGGCCGCGTCGACACGGTCGC 11821 29 100.0 32 ............................. TCCCCCGACTTCCGCGAAGCCGCGGGGACCAC 11882 29 100.0 32 ............................. TAGCGGTGGAACATCAGCCCGTCGCTGCCCTC 11943 29 100.0 32 ............................. TTCGGATTCGACACGTACAAGACGCAGAACAT 12004 29 100.0 32 ............................. TCGCGCCGGAAGATCGACGCCGCGATGGCCGC 12065 29 100.0 32 ............................. CTCGCGCGACTGCGACGGCTCACCGCCCGCCA 12126 29 100.0 32 ............................. GTGATGATCTGAGCGTGCATTGGTTCCTTCCT 12187 29 100.0 32 ............................. GCGGCATCGCTCCGGCGGTCGCGCACCAGGCA 12248 29 100.0 32 ............................. TCGTGCGCCGCTGGCCGGACGTCATCGCCATC 12309 29 100.0 32 ............................. CGCGCACCAGCTCGGGCAGGTTCGCCATGGCC 12370 29 100.0 32 ............................. GAGCTGTTCGTGTCCCCGTCGGCCCGGCTGCG 12431 29 100.0 30 ............................. GAGCTGTTCGCGGGCCGCGCAGGACGCCGC 12490 29 100.0 32 ............................. TCGTGCGCCGCTGGCCGGACGTCATCGCCATC 12551 29 100.0 32 ............................. GAGATCCAGAACGCGGCGTCCATCATCGCCCC 12612 29 100.0 32 ............................. CGGACCGGGCGCTGGCCGAGGTCGAAGCGTGT 12673 29 89.7 0 ....C................A......T | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.5 32 CTGAGCCCCACGCACGTGGGGGTGGACCG # Left flank : TCACCCGGGAGGGCGGACGGGTCCATTGCCTGGAACTCGTAAGTGATCTTGCCGATATCATGGAGCGCGGCCCAATGGGCCACCAGGAGACCGGCGTCATCGACATCCACTCCGAGCGCGTCGACAATGGTCAACCGGGCACCGGCGGCTATGTGGTCACGCCACAGCGCTTCGGCGGCAGCTCCGGCATCGAGAAGATGACAGATAACCGGATAGGTGACGCCTTCACCCAATCCATCCGATTTCCCCCACAGGCGAAGATCAACATAACCCTCGCGATCTTCACGCGAGGGAACAGAATCCTCCGACAAGGACCAATCCCCTCAGTCCAGCCCTCCCCGATACCGCGTAGATTAGCGACGAGGGCGGACACTTATCAGACTTTCACGAGAAAAATCATGCAACTACTTTCTGTCAGCGAATGGCTACAGCGACTCCCAACTGGCGGCCATTTCATGTCACAAATCAATAACGGCCCGCGTCGTCCCAGGTGAGGAAGT # Right flank : TGCGTGAGCTGTCCAGACGGATGACGTCGTCTTGTGAGCCCCACGCCACCCGAAACCACCCCGGAGCCCCCGCCTTCAGCTCCGCAGCCGGTCGAGCGCCCACTCCCGTCAGTGCCGGTCTACCCCCAGCATGGCCAGCAGGTCCGCTCGCAAGGCCACGAACTCCGGGGCCGAGCGTCGGCGTGGGCGGGGGAGGCCGATCGGCTGGTCCTGGGCGATCACGCCGTCGCGCATGACCAGCACCCGGTCGGCGAGCAGGACCGCCTCCTCTACGTCGTGGGTGACCAGGACGACGGCGCAGCCGTGGCGCTGCCAGAGTTCGGCGACGAGGTCCTGGGCTTTGATCCTCGTGAGCGCGTCGAGCGCGGAGAAGGGTTCGTCGAGCAGCAGCAGGTCGGGGTCGCGGACGAGCGCGCGGGCCAGTGCCGCGCGCTGGGCCTCGCCGCCTGAGAGGACCTTGGGCCACACGTCCACCCGGTGGCCGAGGCCGACTTCCTCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA //