Array 1 123989-122743 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREN010000001.1 Enterococcus sp. DIV0212c scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 123988 33 100.0 35 ................................. CGTTGTGGCTATTCGACTGGCTGCAAGATGAGATA 123920 33 100.0 33 ................................. TTCAGTAACATTGAGCTTAATTCCCCATTGTGC 123854 33 100.0 36 ................................. GTCGTACGCTTGGTAATTCCTCAATCCTGGTCCATC 123785 33 100.0 35 ................................. AGTCTGAGTTTAAGGCTATTCCTAAAACTTTAGAT 123717 33 100.0 35 ................................. AAATAACATCATATTAACCGCGGAGTGTGGAAAAT 123649 33 100.0 35 ................................. TAATCTGGCACGAGCATAGGATAATCGGCGGCCAC 123581 33 100.0 35 ................................. ATTTCGTATCATTCCACTTGAGTCGAGTTTCTTTA 123513 33 100.0 34 ................................. TTTTTCTTTTTACTCGATCGATAATTGAATCGTT 123446 33 100.0 34 ................................. GTCGCAATCCATTGTTGCTCGTTCTCCATTTCCC 123379 33 100.0 34 ................................. CCCAACCTTTTGCAACTCCATCTTTGAAATTTTG 123312 33 100.0 34 ................................. GTCGTGAAGGCGTCGGACGAAAAAGCAATCGCTA 123245 33 100.0 36 ................................. ATACCTAATAGTATCTGGTACCCAACCCGAATCAGG 123176 33 100.0 35 ................................. CTTGAGTGCATGGGAAGCCCATCCAGTTAGTACCT 123108 33 100.0 34 ................................. TACTGTGGACTTGTAACACCCCGAAATGTAGCTC 123041 33 100.0 35 ................................. ATTCTGACGGCATCAAAGATAGTAACTATATCTGG 122973 33 100.0 34 ................................. TCTTTTGTTTAGCTCAATAGAAATCTCTAGCTCA 122906 33 100.0 33 ................................. TTTGCGATCGTTAGGAAAATACCCACTATTAGT 122840 33 100.0 33 ................................. GGCTCAATTAAATCTCTCTTGCCTTGCCATAAT 122774 32 84.8 0 ...................C...AA..A-.... | ========== ====== ====== ====== ================================= ==================================== ================== 19 33 99.2 34 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : AACGTTTTGAGTTTCTACAAAAAATGTGGGTAAAAGAAGATCAACAATTATCGTTTGATTTTGAAGAACCATTATTGGTTGCTGAAGAAAATCCAGCAATTTTTGAAAAATACTCTCAAGTAGTTTGGCAAAAACGAACTTTAGGAGAAGTAACCCATATTTTCAGCCATCTAAAATGGCATATTCTTGTTTTTTACGGACGACAAACAGGATTAACAGCTTTGGAGGAAAATCAAGAGTGGGCAACAAAAGAAGCATTCTCAAGTTACGTTTTTCCAAAACCTCAGCAAAAAATGTTAGACCTGTACAATAAAGAATTTAAAACAAAAGAATAATCTTTGGTGCGGACCCCAAGTGCACATAAAATCCCTAGGCGATCCGCACCAGAATTTTGATGAAATTAGAGGCGAAATAGCTCTTTTTCTCATTTTAATTTAATGTTATGCTAGATTTAGTGTTGGAATTGTGAAAATATGTCGTGTATTTTTATCAATTTCACA # Right flank : CATAAGCAAATAATACCAAACAACTGAATGATCTAACCCTGTATAAAGCCACTAAATCAAAACAAATCCATCCCAATTTCAACATCAAATAAACGAAAATCAAACCATTTATTTTAATAGATATTCTCATTGTAATAAGAAACCAAACTCCTTAGTATGCAAAGTTGAAAATTATGATATAATTGAATTGATATCGGTGTAATGAACACCCAAACGAAGAGCAATCAGCTTTTAGAAGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACGATTCAAAGTTACAAACACGATGGTCATTTGCATCGAACATGGCGAGATACTATGGTACTAAAAACAAGTGAGTATTCTTTAATTGGCGTTAACGATCATACTTTGGTGACAGAGTCTGATGGTCGACGTTGGGTTACTCGGGAACCAGCTATCGTTTATTTCCATAAAAAATACTGGTTCAACATAATAGCGATGAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26192-25816 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREN010000031.1 Enterococcus sp. DIV0212c scaffold1.31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 26191 34 100.0 33 .................................. GAAAAATCGTGTCCCATGTTTTGTTGTACCTGC 26124 34 100.0 35 .................................. AACGTTTACAGATACAGTCTAAAAATTTTACCGCT 26055 34 100.0 35 .................................. AACACAAAGTGGCGGTTTGTTTATCATGAAAACAG 25986 34 97.1 35 ..............C................... TTTGTAATCAATCGGTGCAACAGATTTCTTCTCAA 25917 34 100.0 34 .................................. ACAACTATTTAGCTACAAGCCCCACGGGTACAGC 25849 34 94.1 0 ..........A.............A......... | ========== ====== ====== ====== ================================== =================================== ================== 6 34 98.5 35 GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT # Left flank : TGGTGATGGTGGAGCAGATATTTTACCATTGTTCCGTTTAAATAAACGCCAGGGAAAAGCTTTACTAAAAGAATTAGGAGCACCAGAAGAACTATATACCAAAATTCCAACGGCTGATTTAGAAGATGATAAACCGTTAGTAGCTGACGAAGTGGCACTTGGTGTATCATACGATGATATTGACGACTATGTTGAAGGAAAGACCGTATCAGATAAAGCAAGAGAAACAATCGAAGGCTGGTACAAAAAAACACAACATAAACGCCATATGCCAATTTCAATTTTTGATGATTTTTGGAAATAAAAGTTAGGTTCCTAAATAAATTCTGTTGGTGCGAACCACAAGTGCCCATAAAATCACTGGGACATCCGCACCAAAATTAAGAGGAAAATACTCTGTATTTGGCCCTTTTCCTCATTTTATTTTAATGTTCAAGTTGTTTTTTGTGGAAAATTAATGATTGTGAGTAATTTATGACGAATAATCCTAATTTTTCACG # Right flank : CCCAATAGGATAATCAGGATATGACGGTTGTTGTGTGTCTCACCCTGTTATAAATCAAACAAACTGATATACAAAGTAAAATAAAAAGAAAGACTAATTCTTAGCCTTTCTTTTTTTACACCTAAGTTAAATCAAAACACCTTCATTTTGTTCAAATGATTAAAAAAAGTGTAAACTTAAATAGGTTATCAGAAATACTCAGTAAAATACTCTACAATTGAATTAATTATAGCTAGAAGAAGGTGAAGGAGAATATGAAAAAATTATTCAGAAAAAAAAGAGACATTGACAATGAACCGTTTCTTTCATCAGAAGAACAAAAACAACCAATAAATAACACCGACATTCGGATTCCGCCTAATATTAAAGGCTTATCAGATCAAGAAGTACAACAGCTTTACTTTGAAGGTAAGTACAATATGGAAGTAGAAGATTTATCTAGAACAACGAAACAGATTATTCTAGATAATTCATTGACACTTTTTAATTTTATTAATTTA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: R [matched GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18596-18090 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREN010000034.1 Enterococcus sp. DIV0212c scaffold1.34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 18595 33 100.0 35 ................................. AATTTATTATAACAATCGGCATAGCTAACATGTAT 18527 33 100.0 33 ................................. GATTCGGCACAATACGTCTCTCGGGTTGATGGA 18461 33 100.0 33 ................................. ATTAGCTTTTACTTTTCTATACGAAAATTCTGT 18395 33 100.0 35 ................................. AATCTACGTTGTATGGGAATTTTCAAAGTGGTTAT 18327 33 100.0 36 ................................. AATACTTGTAACCATTTCTTTTGATATGCCGACTTT 18258 33 100.0 36 ................................. TTTTATGTGTTTCTCTGCTATAGTTACAAATTCCGC 18189 33 100.0 34 ................................. CTCGTCGGACAATGGACAAAAAAGGACCTTACTA 18122 33 93.9 0 .......................A.......G. | ========== ====== ====== ====== ================================= ==================================== ================== 8 33 99.2 35 GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Left flank : AATGAAAATAAGTGGTAATGACTTTGGCGGTATCAATCATTCAACCGTTGTGATTGGAAATAATAACAAAGTAACGAACAGCAAAAGCGCAGAGATCGATTGGGATAATTTTTCAGCAGAGATCATGACAACATTGACAAAACTTCCACAAAATAGTGAAGAATTTCAAGCATGTTCAAAATTGTTGATGGAATCAACATCAAGAGATGAAGGGAAAGTCACAGCGTTCTTGAAAAAACATGCACCGCAATTTACGTCAGATGTATTCAGTAATTTAGCGAGTACACTTCTTTCTGATACAATTAAGAAGTTAATGTTTAATTTGTAACAGCGAATTTCATGGTGCGGACCCCAAGTGCACATGAAATCTCTGGGGGATTCGCACCTGATTTTCGTGAGGAAAGGTCTATTTCGGGTTTGCTTTCTCATTGAATTCACATTTTATAGGTTGTTTTAGGTGAAATATTGTCGTTTTTCTTTGAGAAATGCTGTATTTCACG # Right flank : AGTTTTAAAAAGAGCAACTTCATTTTTTTGAAGTTACTCTTTTTTTATATTTTTTTAGAAAAAATGAGTAGGCTGACCATACGCTTAAAGATATAAAGACAATTTCACTAACTTTTATAAGCAATTTACCTAAATCAAAATTAATAGAAAATTGTTTTTGTATCTCAACCATCTCTTCTAGCGTTAGAGTTTCAGGATCTTGCATTGGAAGGAAATTCAGTGTTAAGATATTCCCAATTAACCAAATTAAAACAATAACAAAATATAAATTTTTTATTATTTTTTTGTCAGACATGACAACAGCCACCTTTATTTAGATATTGTTCTGACGATTTCAATTTTATAAGGCATAATTGCACCTATGGTTTGTACAACTATACTATAGTTATTTCAAAATGTTACGTCAAATTTTTTTCTATCCAATAGTATAGTATACTTGTTTACAGTGTCAAATACTACTTTTTATACATAGTATTTCGATTCTTTGTTCAGTATCAATA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTCACTCTATTTAGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.60,-3.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 27171-26800 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREN010000014.1 Enterococcus sp. DIV0212c scaffold1.14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 27170 33 100.0 35 ................................. ACCTTGATATACTTAAAGTAGAAAGCGAGGTGAAC 27102 33 100.0 32 ................................. TTTTTTAGTCATTGTGGTTAAAAACTGTTCGC 27037 33 100.0 36 ................................. AAATGTTTGCCGGTCTTTTATCAAAAGATACATCTT 26968 33 100.0 35 ................................. ATAAGTTACTTGTCTATTGTTATTGGCTGCAGTTT 26900 33 100.0 35 ................................. TAAATAAAAATACGAGGGGTCTCCTCCCCTCTCTT 26832 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 100.0 35 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : GATAAGGACTGGAACATTTGATCGGGAAAAATCTGGGTATGCAGTTGTAATGACAAATGCCCAAGCCGGTGAAAAAATCATGACGATCAGTGCTGTACATGCTGGCAAAACATTCATCGATATCTTAGGAAACAATCCAACCAAAGTGACTTTAGATGAAACAGGCGCAGGAAAATTTCCAGTAAACGGTGGAGAAGTTTCTGTCTATGTGAATGAAGAGATTGTGAGTAATTTAAGTAAAGAAATAGGTGAATAGTTTTTCATTAGTTCGTGACTTCCGTTAAAAGAATCATTATACTGGAATGTAAGAGAGTCAGATTTGAGAAATTTCTGGAAGTTTGGTGCGAACCTCAAGTGAACATGAAATCACTGGGAGATCCGCACCAAATTTTAGACCTGAAATAGGGTTGAATCGGTGGTTTTTTAATTGTTTTCTCATTTTCAGAAAAGATTTAAGGTGGAAAGTGACAAATGTGTAAAGCATTTGGTTCTTTTTCACG # Right flank : ACATATTCCACTACAGCAATATGTCCATTTTGTAAATGCTCCTAAATACTCATTTTTTATGAGTCCTTAGGAGCATTTATTATTTTTTAACTGCATTTTATTTTTAGATAACAAGTACCACTAAATCTTTTTACAGGTTATTCATCAAGGTTTGTTCAATCTGTTCAGCTTTTGTGTTTTTTTTGGTATAATGTATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAATCCGAGACAAAAAGAAGCCGTTCTACATACAGAAGGGCCTTTATTAGTTATGGCAGGTGCAGGTAGTGGGAAAACAAGAGTTTTAACTCACCGCATTGCCTATTTAATTCAAGAAAAAGATGTCAATCCATGGAATATTTTAGCAATCACATTTACCAATAAAGCCGCAAAAGAAATGAGAGAGCGGGTTGGAAAATTGATGGAAACTGGCGGAAACGATGTTTGGGTTTCTACGTTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: R [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 228059-227752 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREN010000016.1 Enterococcus sp. DIV0212c scaffold1.16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 228058 34 100.0 35 .................................. ATTTTGCAGAGGCTGTAACCAACGAAGTCAAGTCG 227989 34 97.1 33 .................................G CTCTCCAGTCGTAAATGGGGTAAGCTGCCCAAG 227922 34 94.1 34 ................................CG ATAATCAAATCTTACAAGCTCGTGGGATTCCTGG 227854 34 100.0 35 .................................. GAACGCCTTGGCCACAGTCGTATATCAGTTACAAG 227785 34 88.2 0 ......................A..C......TG | ========== ====== ====== ====== ================================== =================================== ================== 5 34 95.9 34 TCTAGCTCTGTTTAGAGCTAGTGGATTGAAATAA # Left flank : ATGGTTATCCACCGTTTTTATGGAAGTAGGTGAAAAGTATGTTAGTGTTGATCACTTATGATGTTGCAACGAGTTCGAAGAATGGCACTCGTCGTTTGAGGAAAATAGCAAAGAAATGTCAAGATTACGGGCAGCGTGTCCAGAATTCTGTATTTGAATGTGTTGTCGATGCAACTGAGTTAACGAAGTTGAAGAAAGAACTAGTTGATTTGATTGATGAAGAATTGGATAGCCTTCGGATTTATCGGTTAGGAAATAATTACCAAAATAAAGTAGAACATATAGGTGCGAAGGAAAGCTTTAATGTAGAAGCACCTTTGATATTTTAAAATAGTAATTTGGTGCGGACCTAAAGTGCACATGAAAATACTGGTGGATCCGCACCAAAAAACAGCTATTTTATATCGATAAACAGCTGTTTTTCTAAGGAAAATTTAATTTTAAAGTTGTTTTTTTGTGAAATAGAAAAAATATGTCATGTATTTTTGTCAATTTCACGG # Right flank : TTTGGCCATCACCAGTGTTAGATCTACCCTCATCGGTTTATATCTGTCTAGAGCATACCAATCACATAATAACAATAAAAGGAGACCTAATTTCTGTTCGGTCTCCTTTTCGTACATTAAAAAATCTGTTACGAGAATACAATATATTTTTTTAATCCAGAATTCAAACTTTATAGGACTGGTAAAATAAACGTAGAATTTATATTTATAATAGGTATAATAGAATGATACGATATCATTATTATTGTGTACGTAAGTGAAAAACTTCTAAGTATTTCACTTATTAAAAATATAACGGACCTATAAAATGAAGGTCTTAACCAATAACTACGAATAAATACATATATATGAGTGAAGCTGAAAAAGAGTCTTTTTTTTTTTTTTTTGAAAAATAAATTTAATTTGTTATTTTTATATATTTTTTTCTCGTTATATTAACAAACGAGAAAAATATGAAAATGACGTATTATTTAGGTTTGTAAGCTGATGATATAATGTTT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTAGCTCTGTTTAGAGCTAGTGGATTGAAATAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: R [matched TCTAGCTCTGTTTAGAGCTAGTGGATTGAAATAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //