Array 1 25810-24652 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZZQ01000025.1 Neisseria meningitidis strain Neisseria meningitidis isolate R424, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25809 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 25743 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 25677 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 25611 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 25545 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 25479 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 25413 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 25347 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 25281 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 25215 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 25149 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 25083 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 25017 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 24951 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 24885 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 24819 36 100.0 30 .................................... TAAAGGCGAAAACATCGCCGCCTTCTTCTT 24753 36 100.0 30 .................................... TGCCGAAGCCGACATCGCCGCACACAAGGC 24687 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGCGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //