Array 1 613-104 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNYK01000028.1 Legionella londiniensis strain ATCC 49505 Llon_ctg028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 612 28 100.0 32 ............................ AGTAAGTAGTCGAGGATATCCTATTTATAGTA 552 28 100.0 32 ............................ TTTTTGCTTAATCATTTTCGCACCCTCCTTAA 492 28 100.0 32 ............................ AAACGTCCTGAACAACAGCGCACAGAAATACT 432 28 100.0 33 ............................ TAGATAAATGGCGTTCGCTTCTGCAAAACGCAT 371 28 100.0 32 ............................ AAATGAACATCGAAGTCGTGATTCGCGGCGAT 311 28 100.0 32 ............................ TCAGGTTTTTTTTAGATTACGCCATGTAGTCT 251 28 100.0 32 ............................ ACATTATCAGGGGTTGTGTAGTTGTATTCCGA 191 28 100.0 32 ............................ AAACAAAGACAAATACGTTTTGAACAAAATCA 131 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTTAACTGCCGCACAGGCAGCTTAGAAG # Left flank : TCAATCAAAAATGAGGCGATTATTTAAACGTGGTTCGATGACAGTGGGTGATATCAGGCAATACAAAGCTAAAATGTTTGCCAAAAGTATTGATAACCCTTATCTTGAATTGGTAAGTGGATCAAATGGGTATAGATATAGGCGCTACATTGAATTTGGTGAGTTACTCGACCAGCCAGTTTATGGAGAATTTGATCGGTTTGGTCTTTCCAAAACAGCCACTGTTCCCTGGTTTGATTAAATAAAAGAATATGAAATCAGTTAAGTTCGAAAGGTTGAAGTGGAAGTTTGTAATTTGTTCAAATACTTGAGTCATTTTTCTAAATAAGATAGAAATAATAGGTAATTTGAATATTTCATACTTCAAATTACCTATTATTTCATCTAATGTTAATTTGTTATTAAAATCAAATGGATATAACTAATTGGGAAAAATTGGGTAAATCAATTTTTTCCAATTATCTCTTTGTTTTATCAGTTTTTTTATGGATGATGTTACA # Right flank : GAATAATAGAAAAGATTGAAAGAGTTACGGTTGAAAGTTGTGTACGGAGATAATTGAAAAAAAGGTTGGGTGGTGTAGCCTCATTAACTGAAGAAGGTTAATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 117-369 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNYK01000030.1 Legionella londiniensis strain ATCC 49505 Llon_ctg030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 117 38 100.0 33 ...................................... TACGTCCTGCCGTGTGGATTCCGGCAAATTCGT 188 38 100.0 35 ...................................... TTCCTCTGGGGATATCGTAGGCATCGCTTCTTCCG 261 38 100.0 33 ...................................... GACGCTGGTCCATGGGTGACCCACTATGAAGAG 332 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =================================== ================== 4 38 100.0 34 AGTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGG # Left flank : ACTCGGCAATTGGAGGTATACCACCCAAAAGAAAATTGGCTCTAGCAGCCTAGGTTTCTACTTTTAGCGTCAGTTAAAAATGGGAGGATTACCTCCCTACCAGTGCCTTTTATTAAA # Right flank : GTGTTACTTTTGGCGGGGGTACTGAGAAGTATGTTGTGTTTCAGTGGNNNNNNNNNNCACAGAAAAAATTGGAGTGCCTGTCTTGGATATTAAGTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGGTGTTACTTTTGGCGGGGGTACTGAGAAGTATGTTGTGTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGGACTTTATAGTTCGTCTTTAGCCCTTTTTTCCACATACTAGTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGGACAGAACCAGGAGACGAAAACAACCAAGACATATCGTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGGCTGTTGTACAGGCTGCTGCTACCGACCCCATTTAGTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGGCCTGTAATAGAATTTATGGATGAGCAGTTCCCAGTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGGTCTTCTCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 3397-462 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNYK01000030.1 Legionella londiniensis strain ATCC 49505 Llon_ctg030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3396 37 100.0 37 ..................................... CCATACAAGCTCGCCACGACGTTCTATATATAATAGT 3322 37 100.0 35 ..................................... TCTTAGCTCTATTACCAAACAGAGCTTTCATAGAA 3250 37 100.0 40 ..................................... TAGTAAACCATACAAACATGTATTCGGAATATTTTAAGCT 3173 37 100.0 35 ..................................... TTCATCATTCCTCGGAACATTGCGACTAACTCGTC 3101 37 100.0 35 ..................................... TTCCAGTGCGAATACGTGCCTAAAACCTTTTTTAA 3029 37 100.0 36 ..................................... CCGGTAAGCAACAAAGCGAGCGCGCTTAACTGCTGT 2956 37 100.0 36 ..................................... TATAATACTTAATCCACATAGTAAACTTATTATTGC 2883 37 100.0 33 ..................................... TCTGAAGCACAAGCTTTAGAAAGAGAGTTAGGG 2813 37 100.0 37 ..................................... CATTTCATCATCTGTTTTACTCATCAATTACTCCTAA 2739 37 100.0 36 ..................................... AGGACAAACTCCATTATGAAACTCCATAGCCATAAT 2666 37 100.0 36 ..................................... AAATATTGCATTGTCGGTACAATCATTAATATACCA 2593 37 100.0 35 ..................................... TAATAAACACTCTTCTTAGCTTTAGGAACATTAAC 2521 37 100.0 35 ..................................... GAAATATACTACATTTGTCTGGAGCTTGGTTATGA 2449 37 100.0 37 ..................................... TAGAAAACATACTTGTTACTCCTTGACTTGGCATAGC 2375 37 100.0 35 ..................................... TCTAACTTGGTGTCAATATATCCCAACTCAAACCT 2303 37 100.0 34 ..................................... TTTTGCCTTTGCACCCATCGCACCTTTTCATAAA 2232 37 100.0 35 ..................................... TTCGTTAGAGTTGCTGACCAGGCTGGAACACCGGA 2160 37 100.0 35 ..................................... ACATTTTTAAGAATGGTAGAGGCCATCCCACCATA 2088 37 100.0 34 ..................................... ACCAAAAAACTATTGATATGTTAAACACATTGAA 2017 37 100.0 37 ..................................... CTATTCTACTACTGAACTACCCTGCAATAACTATTGC 1943 37 100.0 35 ..................................... TGCAGTTTTTCAATTCGTCGTTTCAACGAGCTTAG 1871 37 100.0 33 ..................................... ATTGACCGCACAAGTATTTACTCGCCAACCATA 1801 37 100.0 35 ..................................... GGTGGAAACCCTGTAGTGGTGGAACATTTAGAGAA 1729 37 100.0 35 ..................................... TAAAAAACATGCTCACACTATTAAAAAGAATGGCA 1657 37 100.0 35 ..................................... ATGCTCTTGAAAAGTATTATAAAGGCTTACCTATA 1585 37 100.0 36 ..................................... CTATTCTTACTCTCTCCATAACCTGTTCCCCTGTTA 1512 37 100.0 35 ..................................... TTATTAAACCAGTTTTGCAAGCCTTGACTATTAGG 1440 37 100.0 37 ..................................... CAGGTTTAGACATAGCCACACCTATAAGACCGTTAGT 1366 37 100.0 36 ..................................... TGTCTGTATTGTTCATGTTATATGCTCCTATTTAAC 1293 37 100.0 33 ..................................... TAATAACCCGTGTACCAATATCTATCTTGAAGA 1223 37 100.0 36 ..................................... TATTGATGACATTAGATAGACTTCTATCAATTGTGT 1150 37 100.0 35 ..................................... ACAATTTAAGAGCAGCTAGAAATCTTATCTAACAC 1078 37 100.0 36 ..................................... ATCAGCCAGCGGTTGCGCATCTGCAATGGGTATGGA 1005 37 100.0 34 ..................................... CCATTATTTGCGCCGGCCTGGATGGCAAGGTGTT 934 37 100.0 37 ..................................... TATATGGAATATGCTCCACTATCTTCTCAAGAGAAGA 860 37 100.0 33 ..................................... TGGGAACTGCTCATCCATAAATTCTATTACAGG 790 37 100.0 34 ..................................... TAAATGGGGTCGGTAGCAGCAGCCTGTACAACAG 719 37 100.0 35 ..................................... GATATGTCTTGGTTGTTTTCGTCTCCTGGTTCTGT 647 37 100.0 39 ..................................... TAGTATGTGGAAAAAAGGGCTAAAGACGAACTATAAAGT 571 37 100.0 36 ..................................... ACAACATACTTCTCAGTACCCCCGCCAAAAGTAACA 498 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 41 37 100.0 35 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : TCTTTTGCATCAAAAATTAGTTTAGGTCAAAAGATGCAACTGACCGCCTATGGAATGCTTTCCGAACTGATTTTTGAAAAACCATGTACCAGAGGCTATATTATTACTGGTGAAAAGGCCAAAGCCAAATTAATAAAAATTGACGAAAAATCAAAGCTCAAAGTGCTTGAAATTTGTGCTAAAATAAAGAAAATTTTTGGCACAGAAACATTACCATACAGCACTGCTAATGGACTTCAATGCATTCAGTGTGAGTTTCTAAATCACTGTAACGATAGATTTTGAAATCGTTATATGCTCGCTATTAAGACGAGCATAGAAAAACGATTCAATCTTTAATTTTGTTGATTTCAGGGTATCGAAATTTAGATGATTTCTAATTTAATTATTGCCTTCTTTTTCGAAAAATCAAGCCTAAATAATGCAATTTGCTATTTTTCGAAGAAAACCACTTTTAATTCCTCGTGTTTCTTTAAAATAAACAAAGAGTTAAAATTGCT # Right flank : CTTAATATCCAAGACAGGCACTCCAATTTTTTCTGTGNNNNNNNNNNCCACTGAAACACAACATACTTCTCAGTACCCCCGCCAAAAGTAACACCAATAATCCCTCATCTAAAAATCCAACCACTGAAACTCTCTTCATAGTGGGTCACCCATGGACCAGCGTCCCAATAATCCCTCATCTAAAAATCCAACCACTGAAACTCGGAAGAAGCGATGCCTACGATATCCCCAGAGGAACCAATAATCCCTCATCTAAAAATCCAACCACTGAAACTACGAATTTGCCGGAATCCACACGGCAGGACGTACCAATAATCCCTCATCTAAAAATCCAACCACTGAAACTTTAATAAAAGGCACTGGTAGGGAGGTAATCCTCCCATTTTTAACTGACGCTAAAAGTAGAAACCTAGGCTGCTAGAGCCAATTTTCTTTTGGGTGGTATACCTCCAATTGCCGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //