Array 1 5088-1348 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAOS01000006.1 Desulfotomaculum hydrothermale Lam5 = DSM 18033 strain type strain: Lam5 = DSM 18033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 5087 30 100.0 37 .............................. GGTCGTAGGCCTCGATGGCGTTTTCCAGTCGGTGTGG 5020 30 100.0 36 .............................. TAAGTTACACCATTTTTTATGGTTATGGTGTATATA 4954 30 100.0 34 .............................. TCGGTTTTGGCTTTTCTGTGCCAAAACACTTCAA 4890 30 100.0 36 .............................. CTGGCCAGTGCCGGATGGTGCTGGATGGTGAGAACG 4824 30 100.0 35 .............................. ACAGAATTTGAAAAGAAAGCTGTTGAATATTTGCA 4759 30 100.0 35 .............................. TGAATTTTAATAAAATCTCCCTTTTTCAATTTAAT 4694 30 100.0 37 .............................. TTGGCGTATAGTTTATACTTATAACTGTAAAGATATT 4627 30 100.0 37 .............................. TCTGTCTGTCGGTACCCGCGTTCCTCGCACTTTCTAT 4560 30 100.0 36 .............................. AGAGCCAACACTTCACCCCGCCGGAGGCCTGTGGCC 4494 30 100.0 35 .............................. ACGATGTCGCCCAGCAGGGCCATTTCACCGGTAAC 4429 30 100.0 37 .............................. CCCTGGACCTGGACAATATCCCAGCTGGCGGTACTGC 4362 30 100.0 38 .............................. TCCAAGCATGCCAACGATTCCTGGGTGACCTAAAGAAT 4294 30 100.0 37 .............................. AATCTGTCGGTTTAAACGACACACCAAAAAGGTTTTT 4227 30 100.0 35 .............................. ACCTTTTGACTGTACAGAGCATAAGGGGCTGTAGA 4162 30 100.0 35 .............................. CTGAAAAACGGATGCCGGTCCGTTTCCAACCGGGA 4097 30 100.0 35 .............................. CCAATCAGTTGATTGGCTTCCCTTGCAATGTTTTG 4032 30 100.0 37 .............................. CAATCAAGTTAATGCAAATGTCCCCGTAATCGATATA 3965 30 100.0 36 .............................. ACAGGTACTCCTTCGTCCGGTATCCCTTCGTATCAA 3899 30 100.0 35 .............................. TAGCATCCTGGCTATGAAACAAGAACTAAGACACC 3834 30 100.0 37 .............................. CTGGATTGAATCCCGCTGATTACGCCGACATGAATGC 3767 30 100.0 37 .............................. ATGTCAAGTCGGCCCAGTTTAAAGCCTACCGTATGCC 3700 30 100.0 34 .............................. CAAAAGTACACAAAAAGACAAATATCAGTGCCTT 3636 30 100.0 37 .............................. TTTCCTCTTTTTGTTCCTGCTGTGGTATGTATTGTAA 3569 30 100.0 37 .............................. TAGAGAGACTTGCAAAATTTGAATCAGAAATAGACTA 3502 30 100.0 35 .............................. CGGTGAAACCGCACAGCTTGGAAAATACATGAAAA 3437 30 100.0 38 .............................. TCATCCTGAAGGATGATGTCGTTCTCTCGGTACTTTCT 3369 30 100.0 37 .............................. TGACACCATGATAGTCAATGCTGGCGGTCTCTATAAA 3302 30 100.0 38 .............................. ATATATAAAGAAATGGGGTTTAGGCATGGCGGCAATAG 3234 30 100.0 36 .............................. TCAACGCCTTCTCCATAGGCGTCTTTTTGAAGGCCT 3168 30 100.0 40 .............................. CTTTTTCCCTAGCCTTTTCCTGAGTCCCGCTATATTTTCC 3098 30 100.0 35 .............................. CACACCTCGACCGTCAAATCGCTTCCGAGCGGGAA 3033 30 100.0 35 .............................. TCGTATTCGAGCATTAATGCCGGAAACAAGGCAAG 2968 30 100.0 35 .............................. TGACACCATGATAGTCAATGCTGGCGGTCTCTATA 2903 30 100.0 40 .............................. CGGAAACAACAGGCACATACACAGCAACATCTTGCAATGG 2833 30 100.0 35 .............................. TAGTCTGGTTGGGCCTGTTTCTCGTAGTGGGCCAC 2768 30 100.0 35 .............................. AGTATAGTGTCTCAAAAGCTACTTGTCAATAAGAA 2703 30 100.0 36 .............................. AAAGGGTGGCGCTGTATTTCGGCTCTTGGCCGGGTC 2637 30 100.0 36 .............................. CTAACTTCTAATCCGTAGGTCAGGGGTTCGAATCCC 2571 30 100.0 37 .............................. CAGAGGCGCACGAAGCCTCGGAGGTTTCCCTGGCTCG 2504 30 100.0 35 .............................. GGGTAACAACCAGAACAAACCTGGTGGATAACACT 2439 30 100.0 36 .............................. GGAGCAAAGCTCGGTATAGAAATTGGGAAAGGAATT 2373 30 100.0 37 .............................. TTGCTTAAGGAGCGTGAAGAAATGAGTTTAATGAGTA 2306 30 100.0 39 .............................. TCTGTCTGATAGGCTTCAACCACAACAGGTTTTTTTCGA 2237 30 100.0 35 .............................. ACTGCATGGCCGCTTCACGTATCTCTGCCACAGTT 2172 30 100.0 37 .............................. GATGATAAGCTATTTAGCAAGGTTATTGGAGGGAAAA 2105 30 100.0 38 .............................. TACACCTCCATAAATAACCCCCGCCAAGGGAGGGGCGG 2037 30 100.0 38 .............................. TCACACTACAGATTTTAACCAGCTTGGCACGTTGGTTA 1969 30 100.0 35 .............................. TTAGCTTTCCACCTCCTGTATGCTGACTTCAAAAG 1904 30 100.0 36 .............................. CAGGTACCCGGTTTTGTTACAGGAATTTCCTCCCTC 1838 30 100.0 35 .............................. TAAGGAAGGCCGGATAAGTCTCCATCCTGTGCGTT 1773 30 100.0 37 .............................. CCTAAGTCGTCCCATATCAGCAATTCAGCCATTTCTA 1706 30 100.0 35 .............................. CGCCTCATTTTCTTTACATATCCGCCCACATTTGC 1641 30 100.0 36 .............................. TGGAGCAATACGGATTAAGAACATACTACTGGGCAA 1575 30 100.0 35 .............................. AGAGATAAGCCGTCCCATTTCTTGGTTATGTGTGC 1510 30 100.0 37 .............................. TCTCTGTTTTGTGGTAGTTTACAGCAAACCTTTTTTT 1443 30 100.0 36 .............................. TCAGGCCCGGCCAAAAGCTGGTGATGCCGGCATGAT 1377 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 57 30 100.0 36 GTTATTAGCCTACCTATAAGGAATTGAAAC # Left flank : CAAAGGTGAATGCAGGTGTGGTAGTTCGTATGGTTATGTCAAAAGGGTATCCATTAAGGAGAACCCGCGCATGTTCTGTAGCCCTCATCGCGGTAGCCGCACCTGGAAGGAGCTTTATAGCCAGCGCACTTCCATTGAAAGACTGTTTTCGTTGTTAAAAGGCCACCTTTACATGGACCGGCTGACCAAGCGTGGCATAGGCAAGGCTTTTACTGATGTTATGGTTTGCTTAATTACGTTTCTAGCTGCGACTATGGTGCAAATTAGTAATGAAGCATTGAAGAAAGCAGCCTAATTTTAATGACCTAAGGTTATTTTAGTAATTTAGCAACCTGTAGGTAGTAGGTAGCTTTTTGCGCCCTTTTGGTAACATATTCCAAGGACAAATTTACGTTATACCAGAAATAGACTATTTTTTGTTTTGGTCTATGTCTATTTGGTTTTGTATTTTTTGTTTAGGTATAAAATGTTAATTTTGCAATTGGCTCGATATATTAAAA # Right flank : CTCCGAAGACATCGAGGAAATGAAAAACCGAATCGGTTATTAGTGTCAACGCCGACTTTATTTTGACCCACCATCGCCGGTTTAGAATTGACCCACCCGGCGATTTTTTGTTGGTTAGGTGGTAGAGGGGGAGCCGTAGGCTCCAGTCCTCATCTTCTCACGAAGTCGGTAACTATTCCCCCTAATATTGACGATGTGGGAATGGTGTAAGAGCCGATCCAGGATAGCCGTAGCAAGTATCGGATCGCCCATCAGTTCCCCCCATTCACCGAAACTCTTGTTGCTGGTCAACAGAATACTCCCTCTCTCGTATCTTGCACTTACTACCTGGAAAAAGAGGTTAGCTGCCAAACTGTCAAACGGTAAGTAACCAATTTCGTCAATAATCAGGAGCTTTGGTCGAATATAGATGCGTAGGCGTTTATCCAGCCTGTTTTCCGTGTAAGCTTTTCGCAAAATCTTCGATGAGTTGCGAGAGACTGACAAAGTAAACCGGAATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 2 7553-6735 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAOS01000006.1 Desulfotomaculum hydrothermale Lam5 = DSM 18033 strain type strain: Lam5 = DSM 18033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 7552 30 100.0 35 .............................. CCCAACAAGTGTAACAGATGGTGTATTGATTTATT 7487 30 100.0 36 .............................. GTGATACAAGAATAACCAGTAATGTATTGGAACGCT 7421 30 100.0 36 .............................. GGTGGATATACAAAGAAAGATAAAACTCCCCCACCT 7355 30 100.0 37 .............................. TCGAGGAAGCTACCCATGAGGGGGGCAGCGGGTACAC 7288 30 100.0 35 .............................. TCGATATGCCAGTATGGCGACCGTATGCCATATTT 7223 30 100.0 35 .............................. TATTGGGTGTTGCAATGAGTATATCCACTATGACA 7158 30 100.0 38 .............................. TAACCATATTGGATAAACTAGCAGAAATCGCCGATACA 7090 30 100.0 36 .............................. TAAATACATCAAGCGCGCGCCAACGCTCGAATTCGA 7024 30 100.0 35 .............................. CACGAGAATCTGCCTCAACTATTGGACGATCCTTA 6959 30 100.0 35 .............................. TAACCAGGACGGTCTGGGCATGGTGGCTGCCGTGG 6894 30 100.0 35 .............................. TTTTATTTGTAATACAAACTATTTCACTCCAAAAC 6829 30 100.0 35 .............................. TATTGGTGCATACAAAGGTTATAAAGACGGTTCAA 6764 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 100.0 36 GTTATTAGCCTACCTATAAGGAATTGAAAC # Left flank : AACAATCACGGCCATTTTGTTTTTAAGACTTTGTGGCAAAGTGGTAGGTGCAGTAAGGGTAGGTGAAATATAACTGTTTGTAATCCTTGTGTACGATGTAAATCAGAAAAGAGTGGCAAAGGTTCTAAAAAAATGCCGCCAGTATCTTAATTGGGTTCAGAACTCAGTTCTAGAGGGCGAGATTACAGAGGCTAATTATAAAAAATTAAAAATGGAGATTGAACGTATAATACGGCAAGATGAGGATTCGGTAATTTTTTATTCCCTGCGTACAACAAAATATTCATCCAGGGAAATACTGGGATTGAAAAAATGTGGAGATGAAAATATAATTTAAAAAGATTTACTTGTCGTCGATTTCCAGTAACGTAAAAACCACGGGAAATCGACGACAAAATAAAAAAAGAAATCCTTGAAACATATGGATTTTTCATATGTGTTATATCAAATACCCGGATTAACCTAAAAAATAAATCCTTATTTTTTAGGCATTTTGACGG # Right flank : ATGGACTGTTTTGTGATGCGAGCAGATATATTGAGCCAATTGCAAAATTCTTAGACCATATAACACACGGGTCTAAGAAGCCTTGAAAAACCGTTTACCCAAAACCCAAAATCATAAATATCTCTTTCATGCTGCCAAAATAAAAAGGTTTCACCTTTTTGCTTGTAGAATTGTTCTTTGTACCCCTACAAAAAACACACAAGCGAGGTGAAACCCCTAATATGTATATTCTTGAAGGAGTACTTTTTCCCTTTGAAGTTTTCGTAGAAAATTTTAACGAAGGCGATAAAGTTTACCAAGTCATTAAACAAATTAACTGTAAGGAGATAGACAAACTTAATACCTGTTACAACGGTCCGGGCCGCAAGGGGTACGATAGGCAAGCTTTGTTCCGTGCCCTGGTGCTTAAAAAACTGATGGGACTTACTACTACAAAATCACTGGTCAAATGTCTGACCTATTCTCCTCTTCTGGCATACTGGTGTGGGTTTGACATTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 43632-43280 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAOS01000008.1 Desulfotomaculum hydrothermale Lam5 = DSM 18033 strain type strain: Lam5 = DSM 18033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 43631 30 100.0 34 .............................. AAGGAAAAACGTGAGGAACTGCAGGTGACAATAG 43567 30 100.0 38 .............................. AAAATCCGCATTGATAACATGCCGGTCCACCTGGAAGG 43499 30 100.0 34 .............................. CGTGCAAAAAGGTCGCCTTCCGTCCGAGATTTAC 43435 30 100.0 35 .............................. ATCGGCAACGGTAAAGCAAAATTCGACGAGTATAC 43370 30 100.0 31 .............................. ACTTGGGAAGCCAGGCTAACCAGGCTAACCA 43309 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 100.0 35 GTTATTAGCCTACCTATAAGGAATTGAAAC # Left flank : GCCTCCTGGAGTCGGAAAAACCCATTTGGCTATTGGCTTGGGTATTGAGGCTATTCGCCGGGGGTATAAAGTCAGCTTTATTCAGATGGATGCCCTGATTCACCTGTTTAAGACTCAGGAAATCACCCGCAGCGGCCGGGTTAGGATCAAACGGATAATTTCCTCAGACTTGGTCATAATTGATGACCTGATGTTTATGGCCATGGACCGCAATGAAGCCAATATGTTCTTCCAACTGGTCAACCGGCTCTATGGCCAAACCTCTCTGATAATTACCTCTAACAAAGGTCCTGAAGATTGGGGAGAGTTGCTCGGTGATCCGGCAATTACAACCGCAATTTTGGATCGCATAATCCATAAAAGTGAGGTGGTTCATTTAAGTGGTGACAGCTACCGAATCAAACATCGCAAATCCATTTTTGGAAATAATTAGATGCTAAAAATTATTTACCGAAATTTGTTCAAAAGTACTTGACGGTCACAACTCCTTCTCTCAAGAC # Right flank : CGTTTAATTAGCGTTACGTTTGACAAAGGAGTTTGGCAACCAAAAACTTTAGAGTTTGATTGCCATCGGCAGTAATAAAAAAGACACTTGCCAACAGCATACTCTTACCCTACCGTTAAAGTTGCCACACAATGACGGTTAGGGGGAAAGAAAGGTTGTTGACAGTGCCTCAGCAAGAGTATATCAGACTAATGCGTGAAATTGAAGGTTTTAAAAGTGGAAAAAACCTGGTCTTAACCGTACCGAAAAAACGCTCAATTTTCCCTTTACTGGCCGCATCATAAGGCTTGGTATGGGTCAACACAATCCCCAGACCGGCGCAGGCGATATGAAAAGTATCTGCCCGGTAAATCTTGCCATTATCAACGTATACAATCTTAGGTATGCCCCGTCTGATCAAGGCCTCCTTGAATACGTTTTTAAGGGCATCAAACTTCACGGAGACAGTAAACTGGGCAAAGGGCACAATTCTGGAGCAATCATCAATAAACCCGAAGAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 71022-75642 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAOS01000004.1 Desulfotomaculum hydrothermale Lam5 = DSM 18033 strain type strain: Lam5 = DSM 18033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 71022 37 100.0 36 ..................................... AATTCTAGTTCGTTAAAAAGGCAAATACCATTTTGC 71095 37 100.0 39 ..................................... TTTATTGAAAAGAAAGTAGATAAACAAAAAGAAAAACAA 71171 37 100.0 37 ..................................... TGATTTAAAATTAACATATTATACACTCCTTTTTTAA 71245 37 100.0 37 ..................................... ACAATATTAATAACAACAATATATTTCAGTTTTTACT 71319 37 100.0 34 ..................................... ATGTATTTTTTTGTTGTTATTATCTAACCATTGC 71390 37 100.0 38 ..................................... ACATAGTGCCAGCGGGAGACGATTTTGCCGACCTTCTT 71465 37 100.0 37 ..................................... GAAGAATTACAAGATAGAATTAATGATTATTCTTTAA 71539 37 100.0 40 ..................................... AAGTCTGAACATACAACTTGATCTTGTTCTGCCCACTCGT 71616 37 100.0 38 ..................................... CCAATAGCTTTTGCGTAGTTGTCTTGCCGCCCAGCTCG 71691 37 100.0 37 ..................................... CCTTTTATATTAACATTTGCAAACTATTTGCATATTT 71765 37 100.0 39 ..................................... GAAAAGAAAAGTAAATGTTCAAATAGTTCAAGTGGATTT 71841 37 100.0 39 ..................................... GAAAAGAAAAGTAAATGTTCAAATAGTTCAAGTGGATTT 71917 37 100.0 34 ..................................... TAGAAACAGTAAAAGTAACTGTGCCAATAGATAA 71988 37 100.0 38 ..................................... AAAAAAGTATTTGATAAATTTTATGCAATCACGTGTGG 72063 37 100.0 39 ..................................... AAATGTGGCAGAACAGAGGAACCAGGTTACACATACCCT 72139 37 100.0 37 ..................................... AAAACATATTCAACTTCTATATTATGAAATCTATGAT 72213 37 100.0 38 ..................................... ATAAAATCCTTTTTGTTTAGTTTTCATATATTTAACAT 72288 37 100.0 36 ..................................... GTGAGATAGACAAGCTGCTTGCAGACGAAACCATCA 72361 37 100.0 37 ..................................... ATCATTGTTTCCCCCTCCACATATAATACCTATATGC 72435 37 100.0 37 ..................................... AATCTTGGGGTCGTAACCTGATCGGCAACTTCATGCG 72509 37 100.0 36 ..................................... AAGGAGGTTAATGCTATGCAAGATATCATCTTTAAT 72582 37 100.0 37 ..................................... CTTCACAGCGTCCTTTAGGGCCTTGTGAAGAACGTTA 72656 37 100.0 37 ..................................... CTGAGGGTAAAGTCGGGTTGCGAATTAGTCTCAATAA 72730 37 100.0 36 ..................................... AAGTAGATATCAGAAGTTAAGACGCTGCGGACAGAA 72803 37 100.0 38 ..................................... ATACATACAACATCAAGAAGTCAGAAGTGCTTGGAAGC 72878 37 100.0 36 ..................................... ATGAAGGGTTTTAAGCCTTTCACATTTTCTGCGACC 72951 37 100.0 37 ..................................... TGTAGACATCTGCGGTGAGTAAAGCTCGGTAGTATTC 73025 37 100.0 37 ..................................... ATACCGGCAGTGAAGTGGCTGCAGTCAAGAATATGAG 73099 37 100.0 38 ..................................... TTTAAAGATTCAGCTCCACTAAGAAAAGCAGCTGTAAT 73174 37 100.0 36 ..................................... ACCTAGGTTTCACCCTGCTGCACCGGAGGCTGTTGC 73247 37 100.0 37 ..................................... TTGAGAGACCCCCTTTTTCGCCTAGTTATCTCCGATA 73321 37 100.0 39 ..................................... ATAATATACCTCTGCCATTTACAGCACCCCCTTCGCTAG 73397 37 100.0 37 ..................................... AGAAAAGCTAGCACTTCTTGGCGAGCTATCATAGTAA 73471 37 100.0 37 ..................................... AGTTAGCGACGACGTCGCGAAGAATCAAGCGATACCC 73545 37 100.0 34 ..................................... TCGACGCAACATCAACAGCCCTTGAGCGTAAGGC 73616 37 100.0 36 ..................................... AACTGGCAGTAATCCTCAATGAAGCAAGCGTTTACC 73689 37 100.0 37 ..................................... GTGGAAGTCTGTTCCACTAATTTGCAGAGGGTATAAT 73763 37 100.0 37 ..................................... TATCGTTGAAGCGCTTAATGTAGGCTTCTTTGAATCG 73837 37 100.0 39 ..................................... ATGGCTAACGTATCTATTGACCGACTGGCCGCCGAGATC 73913 37 100.0 37 ..................................... ATATTAGTCGGTCCCCAAGGAATAGGTAAAAGTACCT 73987 37 100.0 36 ..................................... GAAGTGCGCATGGCCGTTCACAAGATTGCGGATTTG 74060 37 100.0 37 ..................................... AATTGGTCCTTGGAGCTATATCAACAAGCTAACAAGC 74134 37 100.0 37 ..................................... AAAGAACTCTTTGCCGCCCAGGGATTCCCCAAGAGTT 74208 37 100.0 36 ..................................... TTTCAAGAGACTGCTTGGCTGAAAGCATCATCAGGC 74281 37 100.0 38 ..................................... TTTAAGAAATATTGTCGAAGTCTGACGCCTTCAACAGG 74356 37 100.0 37 ..................................... CAACAAGGCTGAAAAGAGGTTTAACGATGGTGCTGAA 74430 37 100.0 37 ..................................... TTCTGCCTGGCGTACTTCTGGACCATCCGGTTAAGCC 74504 37 100.0 36 ..................................... AAACTGTAGCACGTTGCCTGCTCTGATAATCCGCGG 74577 37 100.0 34 ..................................... GCCGCCGAGAATGCGGCCGATTTCATCGAGGCGA 74648 37 100.0 38 ..................................... TAACAATCGTCCTGGCTGGGTTGCCGGACAAAAAATAT 74723 37 100.0 37 ..................................... CGAAAGGGCCGTCCACTTTCCCGTCGTTGGCTTTTAC 74797 37 100.0 38 ..................................... GCTCTAGGCGGTCCATTAGCTTGTCCTCCCCTCAAGCG 74872 37 100.0 39 ..................................... TTCCGCGATATTCTTCCACTGCTTGCTGCATCCCCAGGG 74948 37 100.0 35 ..................................... TCCTGTGTCTATGCCTTCCTGTTACAACCTCCTGT 75020 37 100.0 35 ..................................... ATGATGTCACCTCACACATATGTTTGGTTTATGGG 75092 37 100.0 36 ..................................... ACAAACTCTGCCAGAGGCCCTACGGCTGGCCGCTGA 75165 37 100.0 37 ..................................... TTAGGTCCAACCAAAAGCCCGTGGCTGTGTCAATGTA 75239 37 100.0 36 ..................................... CTGTATTGACTCTGCCCGGGTCTATGCCCATTATTG 75312 37 97.3 34 .............T....................... GTTTAATTAGTTGAATCTCTTTTGCAACTTCTGA 75383 37 100.0 37 ..................................... TATATAGCAACCTTTCTCTTGCCCCGGCCTTAGTATT 75457 37 100.0 38 ..................................... TTCTACCTCAGATTCGGGAATACGAATACGGCCGGATT 75532 37 100.0 37 ..................................... GCGGTGGCTGTGTTCTGGTGTCATAAAGTTTAACGCC 75606 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ======================================== ================== 63 37 99.9 37 GTTACAACCATTGCCCGATAAACAAGGGGACTGAAAT # Left flank : CATCTAAGTATTGATGCTTATACTTTTTCTGAGCCGATGATTTTAGATTTAAAGTTTGGTGAAAAGAAAAGTTTTCACCGATTACAGACCACCGCTTATGCGCTTGCTATGGAGGCAATATACGAATTTCCTGTTAATTTGGGCTGTATAGTTTATGCCAAAATCAAAGATGATCGACTATTTATAGAAAAAGATATTCACATCATAGATGAGGAACTTCGCCAGTGGTTTATTGAGGAAAGAGATGAAAAAATGCGCCTGGTTGAGGAAGAAATTGACCCAGGCGTAAAAGATTGTTTAGATACTTGCCCTTATTATCAATTTTGCCATTAACCTATAAAGAAGGAGAATATGAATAGCAGTTATTTTAAAAGAACTTTCGCAAAAGAAGGGGTTTTTTATGCAAGATATATATTTTCGAGAAAAAACTATTATTTTAAATTATTTTGATTGCTGCAAAGCCAGTAAAACCAAGGCCTGATAGCCATTTTCCAAAGTCG # Right flank : GAACAATTTTCTGTCTGTGGGAATAAATTTACTTGTTAATGATCTTGCTGATAAATTTTCGCCTTTTACAATCTGTGTAATATAATTGTTACTTCGTCAAAAAACGACAGAATATTTAAACAAAATATGGAGGATTTTTTAAATAAAAACTTGAATTTGTCAAGAAAAGTATTCGGGGGCGTAACATGAATAAAGAATACCAAACAATCCTATTAGCAGGGCTATTGCATGATATTGGTAAGTTTTTGCAAAAGGGCGATTTTGCCAAATCCCTTAAAGTATCAGGCAAGCATCCGGCGTTATCGGCTGGTTTTGTTAAAGCATGGTCCTTGGTATTCGAAAAAGTAACAGACGTACAATTATTAATTGAGCTGGTACAACGCCATCATGAATCACATATTTTTCCGTCTGAACTTTTGGTGCAACAGGCTGACCCTAAAATCAGACCACTGGCTTATTTGATTAGTACCGCAGATAATTACTCTTCCGCTGAGCGAGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACCATTGCCCGATAAACAAGGGGACTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-3.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //