Array 1 107878-106214 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMND01000204.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N15757 SEEH5757_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107877 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 107816 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 107755 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 107694 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 107627 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 107566 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 107505 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 107444 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107383 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107322 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107261 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107200 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107139 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107078 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107017 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 106956 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106895 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106834 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106773 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106670 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106609 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106548 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106487 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106426 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106365 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106304 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106243 29 96.6 0 A............................ | A [106216] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125259-124133 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMND01000204.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N15757 SEEH5757_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125258 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125197 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125136 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125075 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125014 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124953 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124892 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 124831 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 124770 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124709 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124648 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124587 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124526 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124465 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124404 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124343 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124282 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124221 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124160 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //