Array 1 92886-91014 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSTO01000004.1 Ligilactobacillus salivarius strain HN26_4 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 92885 36 97.2 30 ....................T............... CTATCAATGAATCTTGCAGTATTTCTTACG 92819 36 100.0 30 .................................... AGTGCCGGAATAGCGACATCGTTTGCTAAT 92753 36 100.0 30 .................................... AAAAAAGATTGTTCTTTAAGGTCTGCAATC 92687 36 100.0 30 .................................... CTGTTTAATTTGTCTGTAACTAAGTTGTAT 92621 36 100.0 30 .................................... TTGGATCATTGAAGAGATGATGATCTGAAT 92555 36 100.0 30 .................................... AGTGCTTGAGCTTCACAATTAAGAAAGTCT 92489 36 100.0 30 .................................... CAATGGTCTCAAACGGCGGTATCTCACCTT 92423 36 100.0 30 .................................... CCCGTCATTCTCGACGGGTTTAACTAGAAT 92357 36 100.0 30 .................................... AATGGCTAAATTGACGTTTCCCTTGAGCAG 92291 36 100.0 30 .................................... AAGAAGGAGTTATTACTCAACAACAAGCCA 92225 36 100.0 30 .................................... GATTGCAAGATATGCAAGAATCGGAGCGAT 92159 36 100.0 30 .................................... GGTTGTTTTTGCACAAACAGTATACCACGC 92093 36 100.0 30 .................................... AATGGAGAAAATCAACGTAAAAGAGATAAC 92027 36 100.0 30 .................................... GATTACGAACGACAAAAACAGGCACGCGGC 91961 36 100.0 30 .................................... AATGCATCTGCAATCATATTAAGAATACCT 91895 36 100.0 30 .................................... AAGAAGCAAAGGAAGGCTTGCCTGAACCAC 91829 36 100.0 30 .................................... TATAAGGTTCATGATATATTAGTCGATAAG 91763 36 100.0 30 .................................... TTTTAACCCTAGGCGGTATCTTAAGCATAA 91697 36 100.0 30 .................................... TGAAACACCTAAACCAGCTCCAGCGCCTAG 91631 36 100.0 30 .................................... GATTAACTTCTGGTAAATTATAAGGATTAT 91565 36 100.0 30 .................................... ATTATTCTTACGTGAACATCCAGATAACGA 91499 36 100.0 30 .................................... TTTATTGTTGCACTCTTTTGAGCACACATT 91433 36 100.0 30 .................................... ATTGATTTAGCAGTGAATTTCTGATCAGAA 91367 36 100.0 30 .................................... TTGATAAGCGAACCATTTATCGCCTTTCTT 91301 36 100.0 30 .................................... CATTTTTTGCGAAAAAAGTAACAATTATTG 91235 36 97.2 84 ..................................T. TACTTTCTTTTATGATATAATTTAGGCATAATTTCAGAAGTATATTAAAGATCTTTAGGACTTGGAAAGTCACAGGAGGATTAA 91115 36 91.7 30 ..........C.............A..........T GATCTACGTTACATTTTCTTAATGTTCATA 91049 36 77.8 0 ......T...A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 28 36 98.7 32 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCAAATTAGCAAAAAATATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGTTGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCTTTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGATCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAATAACG # Right flank : TAAAATACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTACGATATATTATGGTTGATAATACAATATTATATGGTATATAATATAGTTGAAGATAAGATATAGAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTATTAGATGGTTTAGTATTAGCGTTATTAGATAAGCAAGATTATTATGGATACTCATTGACACAAGATATGCAAAGGGCAATTTCGATTTCAGAATCAACATTGTATCCGGTATTGAGAAGATTGAAGAAGGGTGGTTTATTAGAGACATATGATCAATCGTATCAAGGGAGAAATCGTAGATATTATCGCATAACAGATAATGGGGAAGTACACTTAGAAAGAATAAAAAAAATGTGGAATGACTATAAAGTTAGTTTGGATGAAATTTTTGAAAAAACTAGGGAGGGGGAATAATAATGAACTCAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 22050-20521 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSTO01000018.1 Ligilactobacillus salivarius strain HN26_4 scaffold18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 22049 36 88.9 40 AGA..........T...................... GGAGTGATGCAAATGGAAGCTACATACATAGCTTATGACG A [22043] 21972 36 97.2 39 .............T...................... GTAAGACAAGACCTTACTTGGTTATGAGTGCAGAAACAG 21897 36 97.2 39 .............T...................... TGTTCTACCCAGCTTTCATTATATCTCAAAAACGATGAA 21822 36 97.2 39 .............T...................... ACTTGGTACGTTGATTGAGAAAGCGTTGAGAGAATACTT 21747 36 97.2 39 .............T...................... AAGGTGGGATAACATTTATTGGTTAAACTCCAAAGTTTA 21672 36 100.0 39 .................................... ATCAAGCCAGAATGAAAGAGTTTAAAGTATCTAGATTTT 21597 36 100.0 33 .................................... ATCGAAAACGAGGCTAATAAGTAATGTTTGGAA 21528 36 100.0 36 .................................... TAGAACTCAGCGAAAAAGGGTCAACCATGAAAACTA 21456 36 100.0 41 .................................... ACAAAGTTTTACTCCAGACTCTGTTGCAAACTTACTCAACG 21379 36 100.0 40 .................................... GTTCAAAGCGAATTTGATAGGCTATCAGATATCAAACGTT 21303 36 100.0 37 .................................... ATAAAATTGCAAAGAAAATTGTTAAAGAAGTAGGAAA 21230 36 100.0 38 .................................... AACAGTGAATTTTTCACTCTCTCTCGAATTATTTTCTC 21156 36 100.0 44 .................................... TTCATTGATATGTTGGTTAAAAATAATGATGGAACGTTTGATAT 21076 36 100.0 34 .................................... ACAAAAGACTAATCATAGTTACCTAGTAAGGGCA 21006 36 100.0 39 .................................... GAAGAATTGAAATTCAATTCTAATCTATTCTATGAGAGG 20931 36 100.0 42 .................................... ATGCAAGAAATCCTGGATGACATCAAAAATCTATGGGTTTAG 20853 36 100.0 41 .................................... TTTAAAGAAAATTTGGGCTATGGCTAAAGCTGGACGTAAAA 20776 36 100.0 39 .................................... AGAAACCTAAGGAGGACAAATAATGCAAAGTGAAAATTT 20701 36 100.0 35 .................................... AAATTAACTAGTTGACTTATAGAAAGGAAGAATCA 20630 36 100.0 38 .................................... ACGGAAGCCGCGTTTTTGATAATTTGACAGTAAAAACT 20556 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 21 36 98.9 39 GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Left flank : TCATTTGAAGAATGACTAGGAGTTACGACTTGGTAAGCCTTAACATTGATATCTTTCAATCTATTAATAGTAAATAGCGCTGACTTCATTTGTGGCGTACCGCTAGACAAATTCAAAATTAGATCTTCATCTTCTTTAGAATATTTTGAAATTATTCCATTTAGTACTTCATACATTTTATCAAAAATAAATACTTCACTATCAGAAATGACTTCATCACTTTTTTCGATCATAGGATTATATCCATCTATAGAATTCAATGCTAACAAAATATTAGTCTCTTTTGATAAAGCACGCTCAGAATATATTAATAATATTTTTTGGGGACGAAATACCCTTACTAAATGTAATAAAGCTCCATCGTGTCTATTTCTTATAGGATCTGTATCACCAATACACGATATTAATGTTGTCATAATTACACCACTTTCTAATTAGTTATCTATATTATATATTATTTTTTCTAATTTTCGCTTTCTCTTGTCTACTTTAATTAAATT # Right flank : ATTCCTTGATCAATTAGTTGATACATCAACAACTATTGACATTTTTAATGGTACCCTAAACGGGCAATAGGTTAACTTAATAAGTAAATAAGTATTATTTGGTCAAAATTCAGACAAGTTTTTATTTGTACTACTATTTCTTCCAATAGTGTAAGTGTATTATAACACAATAAATTGAGGTTTCCTAACAGTTTTCTTTATAGACTCACTTCCTAAAATCGTTATTTGTGAATCATTCACTTCGTTAGGAAGTAAATATAAAGTAATTACACCTGATTTAGGTAATCTATCTTTTAACACTTTAATTACTCTATCTCTAGTAGAATTTTGTCTTACTTCTCTTTCATACACACTAAATTGCTTCATTGTGAAACCTAATTCTACTAATTTCTTATGATATTTAGCTGCTTCTTTTCTATTCTCTTTCGTGTCTCTTGGTAAATCAAAACATACTAATAGCATCATACCTATCTTCCTTCCTCAATGAAAGTCGGTAATTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //