Array 1 45281-45113 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSTV01000013.1 Ligilactobacillus salivarius strain FZJTZ27M6_2 Scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45280 36 100.0 30 .................................... AAAAAATACAAAAACTTATTAACTAGAACA 45214 36 100.0 30 .................................... AGATTAGCTTGCTTGATAAGTTGGTGACCC 45148 36 97.2 0 ............C....................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 99.1 30 GGTCTTAACCTAATTGATTTAACATCCTTCTGAAAC # Left flank : | # Right flank : CGTTACTTTATAATCAAAATTTAACGATTCGTTAGTACCAATCAATATAATCCTCATCAATGTAGTAATTATCACAGCTTTCAAAGAATCTCTGACCATTCTTTTCTGTGAATTCAATTATAAACATTGATGAGTTAGTCGCCTTAACAAGACCTACAAGTTCCTGAAACTCTTCTTTAGTGAGATAATGTGCGACATTGGTTAGACCTATAATTCTTTCTCTATTTAGTTCCACATGCAATTTAACATCTGAAGATATTCTATCATACGCATTTTTCCATAGCAATGCCTCTGTATGTACCTGACAATACTTAAATAGTCTTGTTAAATCATTGTCATAATCTACTTGTAATGGTATATCAATTTTATACAAAACCTCTCGAATACGATCATACAAACTATTTACTGATTTTAGTATTGCTTGTCTTTCATCGTCTGTGATGTCTTCAATAATCTTCTTAATTAATACATTCATATACTTTTTACTAATTCGGTCTGTT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCTTAACCTAATTGATTTAACATCCTTCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 624-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSTV01000034.1 Ligilactobacillus salivarius strain FZJTZ27M6_2 Scaffold34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 623 36 100.0 30 .................................... CATATCCTTGATGTACTCTTGTGGCATAAC 557 36 100.0 30 .................................... AAGTACGAAGAATTTCTGGCGACGTGCCGG 491 36 100.0 30 .................................... TTAACCATCGCTAACATTGGTCGAGCTACT 425 36 100.0 30 .................................... AAACTGTTTTATTAACGCATTAATGAAGAA 359 36 100.0 30 .................................... TATCACAGAAAGTTCTCCAGCAACATTATT 293 36 100.0 30 .................................... TATCTAATGTATTTTATGGATCACGTCAAA 227 36 100.0 30 .................................... TTGCTGTCTTACACCTATGTCAATTCAACT 161 36 100.0 30 .................................... AAGTTCACACGAAAAGCCCTATGACAATAC 95 36 86.1 0 ..........T.........T...A......G.C.. | T [61] ========== ====== ====== ====== ==================================== ============================== ================== 9 36 98.5 30 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : CAGAAGGATGTTAAATCAATTAGGTTAAGACCAGACCTGATGAAGAAAATAAGTCAATAGT # Right flank : CATCTGCGTTCAGTTGGTGTCTCAATGTAAGTACTTTATAATGAGCTGAATATGAAAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //