Array 1 26012-23919 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBMG01000055.1 Neisseria meningitidis strain P4005 P4005_scaffold27.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 26011 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 25945 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 25879 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 25813 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 25747 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 25681 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 25603 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 25537 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 25471 36 100.0 29 .................................... ATTTATATTATTTTTGATTTTGATTTTTT 25406 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 25340 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 25274 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 25208 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 25142 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 25076 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 25010 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 24944 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 24878 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 24812 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 24746 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 24680 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 24614 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 24548 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 24482 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 24416 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 24350 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 24284 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 24218 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 24152 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 24086 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 24020 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 23954 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 32 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //