Array 1 45167-45736 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAQ010000006.1 Pectobacterium brasiliense strain IPO:4058 NAK:235 OMGAEJGH_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45167 28 96.4 32 ...........T................ GGTCAATCGTGATGAGGGGATGCCAGCCGCAG 45227 28 96.4 32 ...........T................ AGCCGGAATTTACATCTGCCCTAAATGCGGGT 45287 28 96.4 32 ...........T................ TGCCTGCTGACGTGGGCTGCGTTCATTTGCTG 45347 28 96.4 33 ...........T................ GCGTAAATAGTTCTGCAACGAGCGGTATGGGAT 45408 28 100.0 32 ............................ GTCATCGGTCATAAAAGGACGTGCGTAAATAA 45468 28 100.0 32 ............................ ATGTGCAATACGAATCACTCTGCGCTAATAAC 45528 28 100.0 32 ............................ TGCACACGGCGACGGTTTGCCAGCGCGTTCTC 45588 28 100.0 33 ............................ GGAAAGCTCGTTGTGGCTTGGCAGGACGGGGGG 45649 28 96.4 32 ...........C................ ATGCGAGATTTTCTCAATGCGAAAGAAGAGGT 45709 28 85.7 0 ...........AGC........A..... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.8 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATAAATACAGAAATTCAGCCAGCAACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTCAGTATAGATATTAATCACTCGGTTGTATATCCACAGCATATGTAGATATCTGACATAGGCCTATCGTCGATAAATGAAATCTTTGCCATACGTTCATGACCCTTTTTTCACGCATCGTCGTAACTTATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGTTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTAGAATGTCTGGGGTTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGAGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGTCAGATTCTGTCGCAGAACAAGAGTG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 52729-52101 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAQ010000006.1 Pectobacterium brasiliense strain IPO:4058 NAK:235 OMGAEJGH_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52728 28 100.0 32 ............................ AGAACTCGCCATTTAGAGGGTCACCACAAACA 52668 28 100.0 32 ............................ ATGAATAGCATTGGAGCTGGCGATCACTGCAT 52608 28 100.0 32 ............................ TGTCGCAAGTTGATTACTGATAATCAGATTTT 52548 28 100.0 32 ............................ ATATCTTCAGTGATGTGATGTATTGCCATCGC 52488 28 100.0 32 ............................ TGAGGGGTATTTCTCAATCGTCCTGAGAGCCA 52428 28 100.0 32 ............................ AGGGAACGCTGGTTCAAAAGTTGGGCTCGTTG 52368 28 100.0 32 ............................ TGGCCTAGTCGGAGAAATAGCCCAATTTATTT 52308 28 96.4 32 .........T.................. AATTTGTGAGGAGAAAACAGTGAACAACATTT 52248 28 100.0 32 ............................ GTCAAACTGTGCCAATTTAATCAGGACATCAG 52188 28 96.4 32 ...........G................ ATTTCGATCCCCGTTGAAGCGCCGCCGCCACC 52128 28 82.1 0 .............C......T...TCC. | ========== ====== ====== ====== ============================ ================================ ================== 11 28 97.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATATATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAATAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGGAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACA # Right flank : CGACATTAAGTGCTGCTGTCTGGCTATTATCGAGGTAGCACTATCGGCAGGTTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTATGGGGAATGAAAAACTGCGGATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATTATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGCGCAGGAAGCGGCGTATTTTTTACAGACGTTATGCACGCCTAACCCTAATCAATCGTGGAAAACGGCTATATTTGGTTGTACCGATCCTGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 61302-61930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAQ010000006.1 Pectobacterium brasiliense strain IPO:4058 NAK:235 OMGAEJGH_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 61302 28 100.0 32 ............................ TAGCGTGCCGTTACATCAAGTTAGCGTGCCAG 61362 28 100.0 32 ............................ TGTATCAGGCTATGCATATTTTGTTGAAAATT 61422 28 100.0 32 ............................ ATTGACGATGGCTGTGCAGACCAGCGAGCCAT 61482 28 100.0 32 ............................ AACTGCGCTTCATACCCGAGATTGCCATTAAC 61542 28 100.0 33 ............................ TGTAGTACCCCACCCTTGATTGCCTCGTACCAG 61603 28 100.0 32 ............................ TGAAGGTCAGCTTCTTCCGCGTGCTGCCATAC 61663 28 100.0 32 ............................ GAGCAATTCTTTCGGCGGAGTAACAGATCTGG 61723 28 100.0 32 ............................ TATCTGGATGGCGTCGATACCCCTTACATCGA 61783 28 100.0 32 ............................ GCAAAAAGCAGCGCTGAATCAGGGGGCGTGGG 61843 28 92.9 32 ...........C.C.............. GTAGAGTTATTGAAAGAACTCCAAACGTCACC 61903 28 78.6 0 ............GC........C..TGC | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACGTTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAATGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTCCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATCAAGAGCTTGTCCAACGGGCAGATGTTCTTCGTGTTTGTAGAACATGGCCCGCTACAGGACGCCCCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGTGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCATCTGCAACCCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGACAAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGATTAAAAACCTAACC # Right flank : CTTATCGGGATGCGTCGCTGGTGCGACGCATTATTGAGAGCTATTCCCCGTTGAGGGTAACCACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATAGGGATCGTTAGACTGTTGCCGAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCACTACCTTCATATGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAACTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGCCCCCTGCTATCAGGCTTCACGTGCCAGAATCGGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //