Array 1 138774-140692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXMM010000012.1 Agrobacterium sp. a22-2 NODE_12_length_192508_cov_26.4946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 138774 29 100.0 32 ............................. CGATGTGCAGAGCAATATCCGGCAGGAGATTT 138835 29 100.0 32 ............................. CCTGCTTTAGCCACCGGCGGCCCTGCCCATTT 138896 29 100.0 32 ............................. GTCAATCGGGATATCCGCATACTTGACGACGA 138957 29 100.0 32 ............................. CTTGCAAGCGTGGTCGGTGACCGTGATGGACG 139018 29 100.0 32 ............................. GTCAGCAGATAGACGGCACCGATCTCGAATTG 139079 29 100.0 32 ............................. CAACCGGATAAACAGGCACGCCGTCACGTAGC 139140 29 100.0 32 ............................. CCGACGCGGTGTTCATCGACGCGGGCTATGGC 139201 29 100.0 32 ............................. AAAACAGGCGAACCATCGTGGGTGTGGCGCCG 139262 29 100.0 32 ............................. CGCTGGGAGATCCTGGCCGACAACCGCAACAG 139323 29 96.6 32 ............................C CGCTAGGCGTGCGCCCGACCATCGCCTCAGCG 139384 29 100.0 32 ............................. CGCTACCCGGCACCTTAAGCTGCAGAACCGTC 139445 29 100.0 32 ............................. CGTGCCGGTGCAGATCAGCCCCAGATGCCAGT 139506 29 100.0 32 ............................. TTGGCGTTCATGCTGCGCCGCCCATTGCAAAA 139567 29 100.0 32 ............................. GCAGGCACAGCCGTGTGCAGGCGACAGCGACT 139628 29 100.0 32 ............................. GCGCAACGTCGCGCGCCAAGATCATTGACAGC 139689 29 100.0 32 ............................. TTTCCGGGCCGGTCTTGCAAGTGACGGTCAGC 139750 29 100.0 32 ............................. GTTCAATCCGTCAACATCGCTGAATTGCACGT 139811 29 100.0 32 ............................. AAATGAAATGACCGACAAACTTTCACCAACAA 139872 29 100.0 32 ............................. GGAAACACTCATGTTTGTTGTCTACACCGTCA 139933 29 100.0 32 ............................. GGGTAGGCCGTGGCCACTTTCATCAACCAGCC 139994 29 100.0 32 ............................. CCGCCAGACCCTGAGGACGGGAAGTCACCAAA 140055 29 100.0 32 ............................. GACGCATCCATCTCGATCACAGTCGATGCGTC 140116 29 100.0 32 ............................. TCGGAAGACAAAGGCCGCAGCCTAAGCGAAGC 140177 29 100.0 32 ............................. GCATAGAGGCAGCGGTCAAAGTGGCCGACCGC 140238 29 100.0 32 ............................. ACCGATAACTTTCTGGAACTTTGCATAATCGC 140299 29 100.0 32 ............................. CTCACGACGAGAATATTCTTCTGCGCCTTGCC 140360 29 100.0 32 ............................. GGTGGGCCTGCGCGTCCTGTGTTTGACACCAC 140421 29 100.0 32 ............................. GATCATCAGGTCCAGTAATGTCGCTCCTCGTC 140482 29 96.6 32 ............................A CCGCGATGGATGCCGGGCATAGCGATGGTCAA 140543 28 72.4 33 A.......G..G.....C....-C..G.T CATTGTGAAGCCACTCTTTTCGTGGCAGGTCTG 140604 29 93.1 32 .........A...A............... ATGTGACCGTACACGTCCGCAAGCGATCCGAG 140665 28 86.2 0 .........-....T.........GG... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.3 32 GTGTTCCCCGCATGCGCGGGGATGAACCG # Left flank : GGCTCCGCGAGAAAAGCGTCACGCTGCGGCTGGGGAAGAAGGCCGGCTCGACGCTTGCGCCACTCGTCTGCCGGCAGGGGGCCTCTGAAGCGATGAACTGGGCGCTGAGCGAAATTTCCGTCCGCCACCGATGGCTGGCTGGCAAAGGCAACTCCGACCACTCCGCTCTGCCGGCCTCCGCCGATCCGGCGGCTGTTGATGCCGTGCGCGCAGCTTGGCCGGAATGGGAGCGGTGTATGCCGCTTTACGTGGTCGGCGAGGATGGCGGGTTGATGACCGTTGGACAGGATGGGCTGGACTATGATGCGCAAACCGGCTTGAGGTGGCTGGAGGAACATCAGGCGCCGGGGGATGGTCATCGAACCGCCAACTAAAGGCCGGCGAACAGCCCCATTAGCCGCCCGATAAGAGCCTACTGAGGCAGTAAAACAGGGGGCCGAAAAATTGGTGGACAAACCCATGGGGAAATTGTTCAACGGATTCATTGGTTTCCAGGAAGA # Right flank : GTTTGTTAGCCGAAGGCGTTGACCTTGGCCGTGGCGTTACCCGCAAACGCGGGTGCTAAATTTGTAAGCCGTAGGCTAAAAAGGCCCCTTGACACCTCGCAACCCAGGCGGATAGTCTTTGCGGGTATTCAATTAAAACTATAGTATTAGCATCAATACTGAACACTTCGGGGGGGGTGTCTTCATGTCCGATGAGTCGTGCGCTTTTAATCTTATCGCCGATGCTTTCTTTCCGGTCGCCACCGTGTCCGGCGCCCGGCGCTGGCTGACATTTTCCGAGTTGCGGCAGGAGGAGGGCGATTATCCCGTCGCTTTCGACTGGCCGCGCGGCGATCTGAATATCGCGGCCTTCGAATTTGCCGTTGGTGTGCTGGCGCTGGCCTACCAGCCGGAGGACAATGCCGACTGGACGGCGATCTGGCGCGGGCGCAGCGATATCGATCTTGACGAACGGCTGGCGGCGCTCGCCTTCGCCTTCAACCTGACCGGCGATGTTGAGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 147119-149039 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXMM010000012.1 Agrobacterium sp. a22-2 NODE_12_length_192508_cov_26.4946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 147119 29 100.0 32 ............................. ATGACCGATCTGCAAACCGGCGCGCTCACTGA 147180 29 100.0 32 ............................. ATCGTCTTCAGGTCGCGAAGCCTGTCAGCGGC 147241 29 100.0 32 ............................. ACCATCGTATTGGCCTGGATGACGATCTGCAG 147302 29 100.0 32 ............................. GAACCGGAACGATATATTTACCGCATCGTTAC 147363 29 100.0 32 ............................. CCGTACCTGTCGAATTACTGGATCGACGCGAC 147424 29 96.6 32 ............................C TTGTAGGCGGTCGTATAGGGGTGACAGTTTAG 147485 29 100.0 32 ............................. CCAGTGCGACAATTCATGTCTCGCACCCATCG 147546 29 100.0 32 ............................. GAGGAGAAGCTTCTAGCGCTCGGCCCTGTGCT 147607 29 100.0 32 ............................. TCGTAACGGTCCTCATTGTTGAGCGTGACGCC 147668 29 100.0 32 ............................. TATTCTGATTGGTCGTCAACCGAGACGGTAGA 147729 29 100.0 32 ............................. GCGCAAATTCGCACGCTGTTAACGTCTTATGA 147790 29 100.0 32 ............................. TGCAGGCCAGCCGAGCCTGTCGTTCCGGTGTG 147851 29 100.0 32 ............................. CTGCTCGACGGCCGCTTGCTCGTCCAGGGAAC 147912 29 100.0 32 ............................. ATGTAGCGCGGCGCATGGTGCGCTATCTGGGA 147973 29 100.0 33 ............................. CAGGAAGCAGAGAAGGCCGGCAAGGTGGCGAGT 148035 29 100.0 32 ............................. CACCACCTCGCCCCCATGCAGGCCATGTGGGA 148096 29 100.0 32 ............................. GGCCGCGACGCGTCAACGGTCGGGAACTACAT 148157 29 100.0 32 ............................. TTTGCCGGGACGCCCACGACAACGCCAACATG 148218 29 100.0 32 ............................. CCTAGACAATTTGTAAAGTTCGAGGCGCTGAC 148279 29 100.0 32 ............................. GAACCGTTCCAATTCGGCACTCTCAAGCGTTA 148340 29 100.0 32 ............................. TCATTCGGAGCCGGCGTAGCGGTCGCGGCCAG 148401 29 100.0 32 ............................. TCCCGTCCGGCGGGCTGTCGATCATCCCCAGC 148462 29 100.0 32 ............................. CTTTTGTCGGCGTCGGGATCGCTCAGCCATTG 148523 29 100.0 32 ............................. CCTCGCCAGCATCCGGGTCAGACCACTTCCGC 148584 29 100.0 32 ............................. GTACGGCCTCTTGAGTAGACCAGTCCGTCTTC 148645 29 100.0 32 ............................. TACAATAGCGGCCTGAAGACGGCCCTCAATCT 148706 29 100.0 32 ............................. GAGACCAACGCCAACAACTCGAAAGAGACAGC 148767 29 100.0 32 ............................. AGGTTGCGCAGCAATTTCTGTTCGCCATGGAC 148828 29 100.0 32 ............................. CGATCGACGTCCTGGGCGGGGGCGCTTTTGGC 148889 29 100.0 32 ............................. GCGACCCATGCCGCTGGCACGTCCAGCTCGCT 148950 29 100.0 32 ............................. CCGGTATCCCCGGCGATAACCGACGTTGACCA 149011 29 96.6 0 ..................T.......... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.8 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : CGCCCCGACGTGCCGGACGATGCCGTCGGACCGGCATTTGCCGATGCGCCGCCATTGGGGGATGAGGGGCAACGCGGATGATCGCGGTCGTGACCAACAACGCACCGCCACGCCTGCGCGGCCGACTGGCTGTCTGGCTGCTGGAGGTGCGCGCTGGGGTCTATATCGGTGTCTATTCCGCCCGGACGCGCGCAATGATCCGCGACCAGATCGAAACGCTGATCGAAGACGGTGATGCCGTCATCGCCTGGAGCGCCCCGACCGATGCCGGTTTCGATTTTGAAACATTCGGTCAGAACCGGCGGGAGCCGGCTGATTTCGACGGGCTGAAATTGGTTGCCTTCAAGCCACTGCCTTGACTGGAAGGCCTCAACACCCCGCCGAAATTACCTAGCGATAGGATGTGGGACTCCATATTTGCCGCCTATTTCCCGCTCTCACAACTCGGTGGACAAATGCCTGCGGGAATTCTTCAATAGAGTCATAATGTTCCAGGAAGA # Right flank : GCACTCGCAGCTTCCGCCTATATGGTGGGGCTTGAAGGGGAAGCTTACCTTCCCTCACAATGCTCCCTGTCGGACGGCTCGCTGTATGACAGGGGCCCGCCTTGCTCCCTTCAAATCGCCAGCCGTCATGACGCCCTCCGAAAATCGGTCTGTCGGGCGGTTTCATCGGCGATGTGGTCACGGCGACGGCTGAAAAATACGATCCAATCGAGTGCGCTCGGGTTTGCCTCGTCCGGTGGCCAATAGCCCGGCAAGGCATAGCCGGGCTTTCCGGTTTTCACCGTTCGCAAGCCCAAGATTTCGATCGATGGGAGCCCGTGACGGTGCAACCAAGTGCGCCATTGCTCGACCTGTTCCTCCTTGGTCTCAGGGACGAAAACGAGCGGGATGGCTCGCCGCGTCTCGACGCGCGGCGGGGCGTCCTCGCGCGGGTTAGGTTTATTTATTTTTTCTTTCTCTGGGTTTGGTGGACATATTTGTCCCCCTTCACCGGACACATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //