Array 1 5304-5510 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABR01000002.1 Pectobacterium parmentieri strain NY1587A NODE_2_length_204030_cov_9.07783, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5304 28 85.7 32 C.AAG....................... GAAATACGGGGCGAGGAATTTAGCTGTTATAT 5364 28 100.0 31 ............................ GCGCCGAACGGGAAGAGCTTGAAAAGCGTGT 5423 28 100.0 32 ............................ AGATCACAGTGAACAGGAAAACGATATTCAGC 5483 28 75.0 0 ............GC......T.C..TGT | ========== ====== ====== ====== ============================ ================================ ================== 4 28 90.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGACTTTTAACAGATAATCGGCATCACCCGTGGTTTTATAGGCATCGATAATCGCATCCACTTCCCCTAGCATCTGGTGAAAGCGTTCAACGTATTCGCTGGTGTGGTTGATCAGCCGCACCTCAATTAACCCCAGACATTCCAGACCAACGGCATTCGGTGACAGTCGGGCATGATAGCCGAGGATCAGTTGTGCCTGTTCCAGCGCGATGCGGCGGCGGGAGCACTGTGAGGCGGAAAGCCCGACCAACTCACTCAGTTCCTGATTGGTCAGGCGGCCATTGGTTTGCAGCAGCGTCAGAATTTTCAGATCGAAATCATCAATGTTGTACATCGCGTTCCCTAAACAGTGTCAGATAGTCAATCTAACAGACTACCAGCTTTTTAAGCCGCGTTGCCTATGAGTTTTTTATCGCTGATTTCCGAAACGTTTTGTTCTTTAAGCTGCCTGCACGGCAGTGAATGCTGGCTCGATGCGCAGCATGACAGCGCGCCCTTT # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCATCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAACTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGTGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12266-12413 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABR01000059.1 Pectobacterium parmentieri strain NY1587A NODE_59_length_22220_cov_9.41232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12266 28 100.0 32 ............................ CTGTGGGGATGATAAAGAACGACTGGCACCGC 12326 28 100.0 32 ............................ TGGGCGTTTTCGCCAGATACTTTACTGAGGAA 12386 28 78.6 0 ....................TGA.CT.T | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCTAGTGCGGAGCAAAACCGTTACCCAAAAAACGCTCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : TCAGGTTTAAATTTCTTTCCTTCCTTGATATTTCTAAGCTGCCTGTACGGCAGTGAACTGTAGCCCGATCACTCTAACGATTTGTTTTATTAGCAGCAATCACCGTTTTTGCCGCAAAAACCCTTTTTTTCAGCCTAACTGTAACTCATTGATTTTTAATCCTGTGAAATAGACCAAATAAAAAGGGTCTGCATCTGGGTAATATTTTTTGTAGCCATCATTTTCCCAAGATATCTGTGATAGGCTGATTTTCGTTAGTTTTCTGAAGATTATATTTTATTTATTAAATAGTTAGTCTGCGATTAATTTCGCTGGCATCAACACCTATTATCGATCGCGGCAGAAAATACATTATGGATAACGCTTTTAGCCCTTCGGACTTAAAAACAATTCTGCATTCCAAACGTGCCAATGTTTATTATCTTCAGCATTGTCGCATTCTCGTCAACGGTGGCCGTGTCGAATATGTCACGGAAGAGGGAAGTCAGTCGCTGTACTGG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36696-38556 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABR01000027.1 Pectobacterium parmentieri strain NY1587A NODE_27_length_69747_cov_9.86323, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36696 29 100.0 32 ............................. CTAAGTGAATGTAGAGTCGATACCGAAATACT 36757 29 100.0 32 ............................. CTCTTCGAACGTGTAATGCTCGTCCTCGCATG 36818 29 100.0 32 ............................. ATGATTTTGTTTGAAATCATCAACAACCGATA 36879 29 100.0 32 ............................. GCGGACGTAGATTATCACGGAGTTGTGGTGGA 36940 29 100.0 32 ............................. TTAACTTTCAGATAGTTTCCGTATATCTGCTC 37001 29 100.0 32 ............................. CGCATCATTTTCATCACTGCTACCGCCAATCA 37062 29 100.0 32 ............................. ACTATGTGACTTTGTCGCTAGCCTTTGTCCGT 37123 29 100.0 32 ............................. AAACCGGATTAAACACTATTGAAAATATGTCC 37184 29 100.0 32 ............................. AGTCGTTAGATGTAGTAACAAAAGTGCTAGAA 37245 29 100.0 32 ............................. CCAGATTTGCCGATATTATATGCGAATGTAAT 37306 29 100.0 32 ............................. CAAAGGGTTTCATTTTCATTTACTCCATTACT 37367 29 100.0 32 ............................. GGAGCGTAGCTGACACACCCGCAACAGATTTA 37428 29 100.0 32 ............................. CTGATAGAGAGTATGGACTACAAGTTAAAGCC 37489 29 100.0 32 ............................. TCGCCTACCATATCGTCGCCAGATGAATAGTA 37550 29 100.0 32 ............................. CGTGGCGTTACTCGTCAACGATTGGAATTTGC 37611 29 100.0 32 ............................. TACAATATGAAACACGTGGCACTATTCCTGAA 37672 29 100.0 32 ............................. ATACCGCATATGCTCAATTGCAATCACAAAAC 37733 29 100.0 32 ............................. CCGACAATTGGGCTACAGTTGTTTGCGCCTCC 37794 29 100.0 32 ............................. CGCAGGAACCAGTGCCGGAGACTGGACAGCAA 37855 29 100.0 32 ............................. GACTGAACACCATGACTGATTTATTGAGCAAA 37916 29 100.0 32 ............................. TGCGCCTGAATTGGCTTTAAGCGGTGTTGCGA 37977 29 100.0 32 ............................. TACATAATCACAGTCGGCGTACAGCAACGCAT 38038 29 100.0 32 ............................. AATGGTGAAAGACTCCCCCCGCCTGGACATAT 38099 29 100.0 32 ............................. GCTGGAATAGAAACGAATGGCAGTTTTACCGT 38160 29 100.0 32 ............................. ACATCACTGTAGTCGGAGATATTCTCTCATCA 38221 29 100.0 32 ............................. TACATCGTCGGTGGAAATTCGCATAGTTTCAA 38282 29 100.0 32 ............................. GAGTTTCATGCTGCTTCCTCCCGCTGGTATTT 38343 29 100.0 32 ............................. TATTAAATCAGCGGCGGCTACTGCTGTTCGAG 38404 29 96.6 33 ..T.......................... TGCTAATTTGTAACCTTCCGGTATTACCGGAGA A [38408] 38467 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 38528 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATACTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGGGTGTTTATGTGGGTGACACCTCGCAACGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGTCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATACTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGCGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40426-41064 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABR01000027.1 Pectobacterium parmentieri strain NY1587A NODE_27_length_69747_cov_9.86323, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40426 29 100.0 32 ............................. CGTGGTAGCGGTGCTTCTTGGCCATCCAAGAA 40487 29 96.6 32 ............................T CCCGGCTGCACGTGTTTTCCTGGCAAAGCACC 40548 29 100.0 32 ............................. AAATATGTCCTAGCTACTATAAAAATGAATGA 40609 29 96.6 32 ............................A GAGACCTGAAAATAAATGTCATACGTAAAGAC 40670 29 96.6 32 ............................A AGTTCACGGGGCGAGCTGGCTTGCTGTACGCC 40731 29 100.0 32 ............................. GCGAGTAATGGCATTGATTCAGCGGTGTCATT 40792 29 100.0 32 ............................. GCCGGGCTGGAGATTATCGGTAATGCGGAACA 40853 29 100.0 32 ............................. GTCTCGACTACTAATAGGATCAATCATGCGGA 40914 29 100.0 32 ............................. GGCTGCGATGTGGTCGATGAGGCGCTTAACAT 40975 29 100.0 32 ............................. GTGAAAACCTCCGCTACTACCTTTGTTCTCTA 41036 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTTTCCCGCATTCTAAATGGTGAGCGTACACTAACGCTTGATCACATGAGAGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTATTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTAATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGATCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTGTTATAAAACAAACCTCTACTTTTAGA # Right flank : GTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //