Array 1 746-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCQR010000118.1 Phocaeicola vulgatus strain DFI.1.133 AALCOJJI_118, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 745 47 97.9 30 ...A........................................... AAGTTTTTAAAAGTCCTTCAGTACTTTTAT 668 47 100.0 30 ............................................... AGTCCGTTTGAGAATGAATGATACTCCCGT 591 47 100.0 30 ............................................... TTCTTTCTTTGTCTGAAAGTTTGACGCAAG 514 47 100.0 29 ............................................... CCACTCTTTTAGACCTACATGTTGCGGTT 438 47 100.0 29 ............................................... CCACTCTTTTAGACCTACATGTTGCGGTT 362 47 100.0 29 ............................................... CTCGAGGTCTATCTTCATTGTGGGATTCG 286 47 100.0 30 ............................................... TAGAATACAGAGATTTAACCAAGTATTTAT 209 47 100.0 30 ............................................... ATAGCAATACTATTGAATTTGACGATGAGG 132 47 100.0 30 ............................................... ATGACAACAGAAACACATAATTGTCTATTA 55 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 10 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTTTCAGCTAATAT # Right flank : CAAACAGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 21374-19636 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCQR010000078.1 Phocaeicola vulgatus strain DFI.1.133 AALCOJJI_78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 21373 47 100.0 30 ............................................... AAACAGGGATATAATAATGGTATTCATCAC 21296 47 100.0 30 ............................................... CTGAGTGATTTTCTCTTCCGGTCGCTTGCT 21219 47 100.0 29 ............................................... TACTCGTAGGAGTTGAACGGGGAATCATT 21143 47 100.0 30 ............................................... CTTTTTCACAGGTTCATCTTCCACCAGCTT 21066 47 100.0 29 ............................................... AGTATGGAGTGGTCCAGATGAACCGATTT 20990 47 100.0 30 ............................................... GTGAAGCGGTTACAGTCAGTGCGCTCCTGA 20913 47 100.0 30 ............................................... ATGCGGAGAAGAAGGGATATAGCAGTCGTC 20836 47 100.0 30 ............................................... ACTTCGTCCGAAAACGTGGTTTGGATGAGT 20759 47 100.0 30 ............................................... ACCGTTACAATGGAACATACTGTTTGAATA 20682 47 100.0 30 ............................................... GACATCGTGAAGTCAATCACAGGCGAGCCG 20605 47 100.0 30 ............................................... CCTGGCTTCTGGTCGTCAACGCTGTACTTC 20528 47 100.0 30 ............................................... CCAGCGCTGCAAGTATTCAGTTGCACGGAG 20451 47 100.0 29 ............................................... GGATCCAGCCAGAGCGGCAGAACCTTGAA 20375 47 100.0 30 ............................................... ATCCGTCTCAATCATATTCCCTTTGCCAGT 20298 47 100.0 30 ............................................... TGGTTTATGCTAATGACGAGTTCTGTATGA 20221 47 100.0 30 ............................................... AACAAGGACAATAAAGAACTATACAAACTT 20144 47 100.0 30 ............................................... TGACGAATCAAATGTTATGTTTATCTGTAA 20067 47 100.0 30 ............................................... AAATCGAGCAGACGGCCACCACTCCGCAGA 19990 47 100.0 30 ............................................... ACATATACGCACTGAAAACGCAGCTTATCT 19913 47 100.0 30 ............................................... TATCGGCCATTCTCTCCATACTGGATTTGC 19836 47 100.0 30 ............................................... GTACCCGTGAAAGATGAGCGTTTCGGTATT 19759 47 100.0 30 ............................................... TATCCATTAGTGCTGAGGATGCTATACTTA 19682 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 23 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : TTCATCA # Right flank : AGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //