Array 1 31655-31990 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGMX01000018.1 Thermus caldifontis strain YIM 73026 contig018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31655 29 100.0 32 ............................. GATCTCGTTGAGGGTGAACCTCACGAACTGCA 31716 29 100.0 32 ............................. TAAGGAGGTGACCATGCCCTGGACGGAGAACA 31777 29 100.0 33 ............................. TGGTTAAGGGGCAAAGTGGAGGTGTCCACCGGC 31839 29 100.0 32 ............................. TGTCCAGGCCAGGCCCCGACCGCAAAAAATCC 31900 29 100.0 33 ............................. CCCCTGTCGGTGTTCTGTGGGCGGTAGGGCGCA 31962 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 33 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : AGGGTTTGCCCACCAAGGAGCAGGTCCTCGAGGCCCTGAAGGTGGTCTATGACCCCGAGATTCCCGTGAACATCGTGGACCTGGGTCTGGTCTACGACGTGGAGGTGCACGAAAACGGCCTGGTGGACGTCACCATGACCCTCACCGCCATCGGCTGCCCGGCCCAGGACATGGTGAAGGCCGATGCGGAGATGGCGGTGATGCGCCTGCCCGGGGTACAGGGGGTGAACGTGGAGTTCGTCTGGACCCCCCCCTGGACCCCTGCCCGCATGACCGAGGAGGGCAAGCGCATGATGCGGATGTTTGGGTTCAACGTGTAGGGCCGAGTGGGGTGGTATAGTGGGGCTCGAGGTGCGAGGGAGGCAGGTGGGCCCATAGGTGTCTTGATGGATGCGCACCCAGCCTTACGCACGGGGATCTTGGCAGCCAATCCTTAGACTGATTCCCTTTACATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGGTCAAGT # Right flank : GGGTATGCTGAGCCTGTGCTTAGGGTGGTGGTCAAGCCGGGAAAGGAGAGGAAGGTCCGCAACTTCTACCCCAACCTCTACCGGGATGAGCTGGAGGAGATGCCTTCCCAGGCAGGGGTGGCGGAGGCTGTGGCTACCGATGGAAGTTTTCTAGCGGTGGGCTACCTGGACCCCGATTCCCGCATCCCCTTCCGGGCTTACCGCTTTGACCCCGGCCCGCTGGATCGGACCTTTTTTCTAGCCCGCTTTCAGCGGGCCCTCTTTAGGAGGGAAGGGATGGGCCAGAGCTACCGCCTGGTGCACGGGGAGGCGGATGGCCTTCCCGGTCTGGTGGTGGATCGCTTCGGGGAGGTCTTGGTGCTCCAGGTCCGTACCCGGGGGATGGAGGCCTTAAGGGAGGTGTGGTTTCCGGCCCTTCTGGAGGTGGTATCCCCCAAGGGAGTCTATGAGCGAAGCGATGTGGAGGCCAGGAGGCAGGAAGGCCTTCCCGAGAGGGTAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20593-18237 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGMX01000002.1 Thermus caldifontis strain YIM 73026 contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 20592 29 100.0 32 ............................. TACCCCATCCCGTTCCCGTTGGAAGTGAAGGT 20531 29 96.6 33 ............................T AGCTCGCGTACTTTATCAAGAGCTCGGCCTTCC 20469 29 100.0 32 ............................. CGTAGCGGACGCTCTCCGTGGCCTGCGCGAGC 20408 29 96.6 32 ............................A TAACCACGTAGCCGCGAACACCGGTGTAGTTC 20347 29 100.0 31 ............................. AAGAGTCTTGATAGTCTTCCCGAGTCTTGGC 20287 29 100.0 32 ............................. CGCGTCTATGTCCACCTCCACGCCGTCCTCTA 20226 29 100.0 33 ............................. CTTGCTGTGCCGCATCGGGAGAGATGAGCCCGC 20164 29 100.0 32 ............................. ATGGTCCAGGGGTCGGTCCTGTAGCGCTGGGC 20103 29 100.0 33 ............................. GTTTACGCGGCCCTGCTGAAAGACCAAAGCTTT 20041 29 100.0 32 ............................. ATTTTGCCGAGCTTCTTTAGAGTCATGCTTCA 19980 29 100.0 32 ............................. AAAGAGTGTCTGGCTGAGAGACTTGGCAGCGT 19919 29 96.6 32 ............................A CTCTGAGTTTCTCCCGAGGAGGGGGTTCTCCA 19858 29 100.0 32 ............................. TTATGCTAGACACTTCCCGAAGGCTGAGGTGG 19797 29 100.0 32 ............................. TGCGACAGTCATGCCTCAGCTGGGGGTCGGGC 19736 29 100.0 31 ............................. GATCCACAGCCGTCGCGGGGACGCTGGATAC 19676 29 100.0 33 ............................. GCCTTTGAGTACGCCCCTGCCAACAAACCCTCC 19614 29 100.0 32 ............................. GACCCCGATTAGAGCGGCAAAGACCCCCTTTA 19553 29 96.6 32 ............................A GCTCTAGGGAAACTTTTGACCGAGCTCACGGA 19492 29 96.6 32 ............................T GCCTCAGGTGTTGTGGACGGTGCAATAACACC 19431 29 100.0 33 ............................. GCTAGGCTTGACCTGGAGCCCGCCTTTAGGGCC 19369 29 100.0 32 ............................. GCCGGGACCGATGTGCTGCGGCTTCGTCTCTC 19308 29 96.6 32 ............................T ATCCTGTCCGCTTCTCAGCAGGGACAGCATAG 19247 29 96.6 32 ............................T TTACTTCGGTTTTGATCCGGTCACTCTGAGCC 19186 29 100.0 33 ............................. CAACAACCGCACCAGTGGCTCGCACCCGCTACG 19124 29 100.0 33 ............................. CGCCCGTGCGAGCCATCTCCCATGTTGTTGCAT 19062 29 100.0 32 ............................. CGTTCGCCGAGTGCGGGCGGAAGAGCGAATGC 19001 29 100.0 32 ............................. GCCGCCGACACCGCCTTGGCCCCCATCACCTC 18940 29 100.0 32 ............................. GCTTCGGTGCGAGCCGATGACCGGGTTGGTGC 18879 29 100.0 32 ............................. CCCCGGTTTCCCCGGCAAAGAGGAGAGGGACA 18818 29 100.0 32 ............................. GTCAGGTTTTCCAGCCTCATCATCATCCTTCC 18757 29 100.0 34 ............................. TCCCTTTAATGAGGGCCAGAGTTACTGCCCCCGT 18694 29 96.6 33 ............................T AGGGACCGGGTAGTATACGGGGCCATACACGTC 18632 29 100.0 32 ............................. CAGGCCCATGGAGCGGGTGAAGGCGGGAACCT 18571 29 96.6 31 ............................T AGCGGTGTGGGTACGGCCAGGAGAGCGCTAC 18511 29 96.6 33 ............................A TCGCTCCAGTAACCTATCCGTGTGGACCCGGAC 18449 29 100.0 32 ............................. AACCTAGCCTGGGCGCTAATCTGCGCCGGGGC 18388 29 100.0 33 ............................. TTGCTCCGTGTTGGTTCCACCCAAGCGTGGCGC 18326 29 100.0 32 ............................. GGGGTGCTGGAGGCCTACGCGGCCAGCACTCC 18265 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 39 29 99.1 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCGGAGGAGGAGGCGGAGGAGGACGACCCCACCCGGCCTGGGGGGCTTTGGGACCTCGAGGGGGAGGTGGAAGGCGGGGTGGCCTATGGTGGTCCTGATCCTGGAGAAGGTCCCTAGGAGTTTGCGGGGCGAACTAACCCGCTGGTTCTTGGAGTTGGACACAGGGGTCTTTGTCGGTCGAGTCAGCGCCACAGTGCGCGATCTCCTTTGGGAAAAGGTGGTGGAGAAGGCGGGAGAAGGCCGGTGTGCCATGGCCTGGCGCACCAATAATGAGCAGGGTTTTTCCCTGCGACTTCACGGTTATCAAGACCGCATCCTACGCAATTTTGACGGTATAATGCTGGTAGCTGTGCGCAACGCCGAGGCTGTGCGCAAGGCAGAGAAGCTTAAGCGCTTAGCAAGGCGAGCACAGAGGGAGCTTGACAACCAATCCCTGGATTGACTCTTTTTACAGACCCTTAGAGGGGGGTCAAGCAGGGTTTTTGCCGTCTGGGTCATGT # Right flank : AGTATCCCGAGTATGATGAAATTCCCACACCGGTGGGGGAGAGTTGTCCTATGGCTGAGATTGAGAGCTTTTCCCTAGATCACACCAAGGTCCAGGCTCCCTATGTGCGCCTAGCAGGGAGGAAAAGGGTGGGAAGTGGCCTGGTGGAGAAGTACGACCTGCGCCTGGCCCAGCCCAACCGGGAGGCCATTCCCACAGGGGCTTTGCACACCTTAGAGCATCTTCTGGCGGGTTATCTCCGCGACCACCTGGATGGGGTCATTGACCTTTCCCCCATGGGGTGCCGCACGGGGTTTTACCTGGTGGTGGAGGGCCCTTTGGAGGAGGAAAGGGTTTTGGTGGCCTGGGAGCGCGCCTTAAGGGATGTGCTCCTCCATGAGGGGCCTATCCCCGGGGCCAGCTTCAGGGAGTGCGGCAACTACCGGGACCATGACCTAAAAGGCGCCAAGGCCTGGGCGGAGAAGGTGGTGCGCCAGGGTCTGAAGGTGCAAAGGACCATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30367-30702 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGMX01000002.1 Thermus caldifontis strain YIM 73026 contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30367 29 100.0 31 ............................. ATCTCCCCCTTTACGTAGATGCTCCTGCCCT 30427 29 96.6 32 ............................T CCGGGCCACCCCCCTATCCCCGTAACCATCCC 30488 29 100.0 33 ............................. AGGCCGTCGTCCGAGAAGTGGCTCGTGTTTTAA 30550 29 96.6 32 ............................A GTGCTGGCGTTCCACATCGGGGAGCTCATCGT 30611 29 100.0 33 ............................. GCGTCCTTGGCCCTCCGGGTTACTTCCGTGTGC 30673 29 96.6 0 ............................A | T [30699] ========== ====== ====== ====== ============================= ================================= ================== 6 29 98.3 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : AGCGCCCTTTCATATTGCCGGGTGGGGGCCTGATGATAGAGGAGCCGACCAGCGGCGAAAAGGGCTAGGGCCTCTATGGGCTGGAGGGCCACGGGTACATCTGCAATGCGATAAAGCCCTCGGCCCACACGCTCCACGGGGAAACCGTATTGGGAAAGGGCCTCGAGGTCTCGTTCAATAGTCCTCTCGCTCACCCGGTAATACTCAGCGAGTTCCCTTACCCGGTAGCTTCTCAACTTCAAACGGTCCACCATGGAAAGGAGCCTTTCCGCCTTTGGTATTTCCATCTTGGAGGTATTATACTTGGCAGGCTTTGGTATACTGAAGCCGTTGGGTGGGTCCTAGAACCCGCACCAAGCCCTAGCCTATGCCAGGGAGAGGATCTTGACAATCTAAGCCTCCCAAGGGCCAACCGATTGGGTTTTGTTCCACCTTTTTGACTGAGTTTTTCATATGACTTAGCGGGGGGTCATGGGGGGTTTTTGCTGTCTGGGTCATGT # Right flank : ACTTGTAAACTTACCCTATGGTCCTGGTCCTGGACTTCGGCTCCCAGTACACCCGCCTCATCGCCAGAAGGCTTCGCGAGCTTAGGGCCTTCTCCTTGATCCTGCCAGGGACGGCAGGCCTCGAGGAAATCCTTCAGCACAAGCCCCAGGCCCTCATTCTCTCCGGGGGACCTAAAAGCGTCTTTGACCCCGATGCCCCCCGGCCTGACCCCAGGGTCCTGAACCTGGGCCTCCCCACCTTGGGCATCTGCTACGGGATGCAGCTTCTGGCCCAGGAGCTTGGGGGAAAGGTGGAGCGGGCTGGCCGAGCGGAGTACGGCAAGGCCCTCCTTACCCGCTACCAAGGCCCCCTCTTCAAGGGCCTGGAAGGCGAAGTCCAGGTCTGGATGAGCCACCAAGATGCCGTCACCGAACTCCCCCCTGGGTGGCGGGTGGTGGCGGAAACCGAGGAAAACCCCGTGGCGGCCATAGAGGGTCCGGATGGCAAAACCTTCGCCGTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1381-880 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ851835.1 Thermus caldifontis strain YIM 73026 2758568594, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 1380 36 100.0 41 .................................... GCCAGGGGGTGCCCAGAAAGACGGATCACTTGCCCGTCTAT 1303 36 100.0 46 .................................... ACAGGACGTCCCGCTTCAGGTTCCAGTGCTTCATAACCTCTCCTAG 1221 36 100.0 41 .................................... TTTACGGGAAGTCCCTGGACTGCCCGTGCTAAATACACGGG 1144 36 100.0 37 .................................... ACATCGTCGTCCTCGAGGGGGCGGACCTCCGCGTACC 1071 36 100.0 44 .................................... CTCCTGATTTCCCTGCCCGTGTGGCGGCTTGCAAGGACAACCAG 991 36 100.0 40 .................................... GTCTTGTCGTCCCCGGGGGGCACCATGGCCCGGATGATTT 915 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 7 36 100.0 42 GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGCGAC # Left flank : CATGCGCACCCTTCCCACCCAAGCCCAGTACCCCCTTACCGCCCAAACCACCTGTCTCCTGGGTGATGCCTTTACCTGGGCTGGCCTTCGAGGATGGTGGACTTGAACCACCGACCTCACGCTTATCCGACCGGCTCTTTAGCGTTCGCCTGGTGTTGCGATATTTTGGCTGCCAAGATTACTGCGAATCACGTAACGATTGGAGCGTGCGTGCAGCACAAAACCTCTGGCACCTCCCTTTGACTTGGTTCACCATCGCAGTGAAGTGCTATAATGCGGTTGTCCGGAAGGCCGGACGGGGACCTTGAAAGCCAGTTTTCCGCTTGCGCAAGGGAAATATGCGGTTTTCCCTTTTCATCTACCCTTCCTCCAGTGGCTTCGCTACGAAGCAAAGTCCGCAAAACCCCCTTTATTCGCCATATGCATATTCCAAGCTTCATGCTTCTCACAAACCCCCCCTCTGGGAGCATTGTCTGGGACGGTGTTCTTAGGGGGGTACA # Right flank : AAAGCCGGTGCTCAAATGGATCGGCTGGCGGGTTTCTTGGCCACACAGAGGTGACCCGAGGTCCACGTAGTCAGGAGCCTCATACCATAGGCCTCCCACCCCTCCAGCGGTTGTGCCTCCAGAGGCCCACGGGGATGGCCCCTATCCGGGCGCCTCGTCCGGTGTGGCTGGAGGTGCGGCTCAAGGAAGGGCCTTTGGCTCTCCCCCAACCCTATCCAAGACTAGGCCCCCTTGCGGATTCAGTCGGGCTCGGGAGGGATTCCTGGAACCTGCCAGGTGGCGTAGGTGGCAGGAGGTGCCGCAGCCCACGCCGAGGTTCGGGTGGTACGGTGGCCGGAGGCCAGGGTGACCCTGGAAACCTGCTCCCATGGGGGTTGCCAGGCGCTGGTCCTGCCCAAGGAGGGGGTAGCGTTTCGCCTCGAGGGGAGCCCTGGTGAAGCCTGCCGCCTCCTGGCCTTCCCGGATGCGGACGGGAACGGCATCCTGGACCAGGGCACCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //