Array 1 385086-385358 **** Predicted by CRISPRDetect 2.4 *** >NC_015161.1 Deinococcus proteolyticus MRP, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 385086 29 100.0 32 ............................. GTGATTCCGAAGTAGTCAGACAGCGAAACGAG 385147 29 100.0 32 ............................. CGCCTCCCACATCGAAGAGTTGCTGGCCCGCA 385208 29 100.0 32 ............................. GGCGCCGCTGGCCGCTTTGCCGCTCTGCGCAC 385269 29 100.0 32 ............................. AAATTCTTCCCGAAAAAAGCCGACTGGGACAG 385330 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 CGGAACATCCCCGCCTGCACGGGGAAAAC # Left flank : TAAGGACGGAATCTTTCTGGCCCTGCCGGAACCGCACGAGGGAGATTATTTCCCACAGCCGCCCAGCGCCCAGGCGTTTGCCGACTGCTGCAACGAGTTCTGGTGGCTGGCTCCGTACGCGGTCAAGGGGCTGCGGCGTGGGCAGCTGGGATACGCCAAATACCACCTGGACACCCTGATGCGCGGCGAGCTGCTGCGAATGCTGGAGTGGGCGTTCGGGTGCCGCACGGGGTGGGCGCGCAATCCGGGCAAGTTCGGAGCACGCTTTGCGGGCGTGCTGCCACCGGACTGGTTGACCCGCCTGGACACGACCTATGCGGGTGCGGATGCCGGGGCCAACTGGCAGGCCCTGCTGGCCATGACTGCTCTGTTCCGTGAAGCCGCCGCAGAGGTGGCGGCCTGTACCGGCCACGTTTACCCGCTGCAGGACGATGAACGGGTAAGCGCGTATCTGACACGTGTGGGGGAGGAGGGAGTGGGGCAGAAAGGTGGGCTATGAA # Right flank : CACTTCTCCTGTCATGCTTCTCGGCCTTCGGGGGCTGTTTGGTATCTTCGCACAGCCTGGATACAGATCACAATCTCCGCACCCCCATGCTCAGTCCGTCACTGCGCCGCGCTCGGCTCCGCTGACCAGTCGGGCGTATTTGGCCAGCACGCCCCGCGTGTAGTTGGGAGCCGGCTGCACCCATTCGCTGCGGCGGCGCTGCAATTCGGCGTCGTCTACGTGCAGGTTCAGTTCCAGCTTCTCGGCGTCCAGCTCGATCGTGTCGCCCTCGTGGACCAGCGCGATGGGGCCGCCCACGTAGGCTTCGGGGGCCACGTGGCCCACCACCAGCCCGAAGGTTCCTCCCGAAAAGCGCCCGTCGGTAATCAGGCCCACGCTGTCGCCCAAGCCCTTGCCGATGATAGCGGAGGTGGGTGAGAGCATTTCGCGCATGCCGGGGCCGCCCCTGGGGCCCTCGTAGCGAATCACCAGTACGTCGCCCGGCTGAATCCGGTCGCCCA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGAACATCCCCGCCTGCACGGGGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 198573-197386 **** Predicted by CRISPRDetect 2.4 *** >NC_015169.1 Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 198572 37 100.0 36 ..................................... AAAAAGGTGTTCGAGCGTGAGTACACCCTCACCTAC 198499 37 100.0 34 ..................................... CTCCGCGATCAGCATGTGGCAGCACTCCGGGCCG 198428 37 100.0 35 ..................................... CGCTCTGCGGCCGCCCCGCCCGCCCTGCCGGTGAT 198356 37 100.0 35 ..................................... ACGAGTCAAACCTCACTTCGGGCTGAATGAATAGC 198284 37 100.0 35 ..................................... TAAACGGGTTTTCTATGCGTGCGCTCTCAATCTTG 198212 37 100.0 33 ..................................... CTGGCGGTGCCCACCGGCAAGCCGTACGTCAAA 198142 37 100.0 33 ..................................... ATGCCTCGTTGGGCCAGCCGCCTCACTCTTGAA 198072 37 100.0 35 ..................................... GCGGCCGCGCTGGCGGCGCTGCTGGCGCGGGTCTG 198000 37 100.0 36 ..................................... GTTTTTCAGTTTCAGCAGGTCGGCGGAAAAATCCGC 197927 37 100.0 36 ..................................... CGAAGTGCTGCGCCGCCGCCTGAGCCAGACACGGGC 197854 37 100.0 33 ..................................... TGGGTACATGCTCCTTCTTCTGCCCCTGCGGCG 197784 37 100.0 33 ..................................... GTTGTAGAGCTGGTCGGCCTGCTCTTCGCCCGC 197714 37 100.0 36 ..................................... CGGCCGTACGGGGGCGGCCGGAAGACTCTCGCTGTC 197641 37 100.0 36 ..................................... ACCTTCTCTAAAATCCTTTATATATCAGACCATCTT 197568 37 100.0 36 ..................................... AGGGATGTAGACCTTATCTGTGCCTGGAATCAGCGT 197495 37 100.0 36 ..................................... ATGAATGATGCTTGGCGAATAGGCCCGCACAAAACC 197422 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 17 37 100.0 35 GTTGCACCCGGCCTTCGGGCTGGGTGAGGATTGAAAC # Left flank : CACTTTGCCGATGGGTCGCTGCGCCTGCGCGACGTGGCCGCCCATGTGGGCCTCTCGGCCGATACGCTGGAGCGCCTGTTCCGCCGCGTGACCCACCTCACGCCCAAGCAGCTGCTGCTGCGGGTCCGCTTCGACCATGCCGTGCGGCTGCTGCGCCGGCCCGAACTGTCGGTGTCGGAAGTGGCGCACGCCTGCGGCTACAGCGACCACTCGGCGTTTACCCGCAAGTTTCGCCGCATGGCAGGCATCAGCCCCCAGGCGTACCGCCGGCGGCTGCGCGAGCTGGGGCAGTTGTAGCAACAGGGGGCGGTGGCTGACCTGTGCGCGAACCCCCCTGCTCCCGGCAGATTCCTGGGAGGTTCGCGCACGGCTGATTGAGTGTCCAGCACGCTGGAACGGTGGCCTGATGTGCTGTCGGGGTCACGCCGGGTGGCGCCCCGCAGCTGATTCGCGCAGAATGGTGCTGGCTCCCTGTATCCAACAGTAGAAACCAGGGGACC # Right flank : TTTCCTGCGGGGTCAGCGCCTCGCCGCTGGTCAGCAGGTTGCACCCGGCCTTCGGGCTGGATACAACGCCATAGGCAAGGAAGGTTACGTCGAAACCTACGTTGCTCCTTTGGTCAACCAAGCGTACCCGGTGCTTCCATGCCCTTCACCACCCCGCCAGGTCGTCTTTCAGGTCGTCTGCCGCCAGCCGCGCATAACCTTTCCGGGTGGTGTCCACCGACTCGTGGCCCAGGTGTGCCGCCACCCGCCCGAAATCCTTGATCTGTTGCAGCAGCCGGGTGCCCGCGTACTTGCGCCCCGGGTGGAAGCCCCGGAATTCCACCCCCGCGGCCTTGAAGGCCCGCTCCAGATGGTAGCGCGCTGTGGGTGCAGTACCGTAGCGGAACACGCGCTGCGGCGGCGTAGCCCGGCGGCCGGCGCCGAACTCTGGCCCGCCTGGTCCGTGCGTGACCCTGTAGGCCCGCGCCGCTTCGCTTAGGCTTTGGCTCATGGCGACCATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCCTTCGGGCTGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.50,-15.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA // Array 1 53434-53766 **** Predicted by CRISPRDetect 2.4 *** >NC_015170.1 Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53434 28 100.0 33 ............................ CCAACGCCGAAAACGCCGCCGAGTTTAGCGCCC 53495 28 100.0 33 ............................ CGGCACCCAGCGCGGCCCGGTGGCCCTGGAGTA 53556 28 100.0 33 ............................ TACGCGGCGGCGTTTAAGGGGCGGAAGCAGGTC 53617 28 100.0 33 ............................ TGCCGAATCAGAATCCTGAGAGGGTGACGAGGC 53678 28 96.4 33 .............A.............. TTCCCCAAGACTGATGCCGTGGCTGAAGGTTAC 53739 28 96.4 0 .............A.............. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.8 33 GGAACATCCCCGCCCACACGGGGAAAAC # Left flank : TTACGCGGCGCTGGTGTCCGGCGGCTTTACGGTATTTACCGGAGCGGTGGCGGCGCAGCTGGGCTTCGACGAACACCGCGCCAATACGCTGCTGGTGGACGGGGGCCGGCTGACCGGCGACGTGTCCCGCCCGATTCTGGGCCGCCAGGCCAAGGTGGACGCCCTGCTGGACATTACCGCTCGGCTGGGGCTACAGCCGCAGGACGTGCTGGCGGTAGGCGACGGCGCCAACGACCTGGGCATGCTGGAGCTGGCGGGCACCGGGGTGGCCCTGCACGCCAAGCCGGCGGTGGCGGCGCAGTGCGGGGTCCGCATTCACCACGGCGACCTGACGGCGCTGCTGTACCTCCAGGGATACGCCCGGGATGAGTTCGTGTCCCCGTAACGGCAGAGAGGAGACGGCCCGGCACGGTTCCGGCGGCCTCGGAAGTGGCAACCTGCATCTCTCGAATGGGCCGACACCGGGGGAGATGGCGCACGAGTTGGGGGCCAATTTTGTT # Right flank : CACCAGTTGTTGACAACATAAATCTGCCCTCAAGGCCCCGCTGGTGTATCCGGCAGGGTCCGGTACAAATCACATTTTCATGCAGCGCGGCCTTGGCCTGAGCAGAAGCATAGCTCTCCTGATGCCTGCCCGTACGGGCGACGTGTTTTGTCGCGTCCAGCTTTCAAAGTAACCGTAACCGCCCGGAAGTGCGTCTGAGGCGGTCAAAGCTGGCGCTTACGTCTATGCGCTTTCCCTTCAGTGTGCGCCTTGAATGGCCTGACTCCAGAGCGGGGTCAGGGCGGGGAAGTGTTGTCTCGCGCGGTCAGTCGGCCGTCAGGAGTTGCTTATGCTGAAACACTTTTTTTCTCTTTGCCTTATCGCCTTTTTCGCCGCGTCACCCCTGGCCGCTGCGGCGCCGCTGCAGCCTGCGGGCGGCGATGTGGTCTTGGCCATGTCCGACGACCCGACCATCGGCGGGCGCGGCCTCGGCTAGGTGGGGCTGTGAGCAAGCCGTGCAG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACATCCCCGCCCACACGGGGAAAAC # Alternate repeat : GGAACATCCCCGCACACACGGGGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //