Array 1 312128-313376 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTQC01000003.1 Escherichia coli strain CowEC285 contig000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 312128 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 312189 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 312250 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 312311 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 312372 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 312433 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 312494 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 312555 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 312616 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 312677 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 312738 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 312799 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 312860 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 312921 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 312982 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 313043 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 313104 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 313165 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 313226 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 313287 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 313348 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 339076-340934 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTQC01000003.1 Escherichia coli strain CowEC285 contig000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 339076 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 339137 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 339198 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 339259 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 339320 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 339381 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 339442 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 339503 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 339564 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 339625 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 339686 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 339747 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 339808 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 339869 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 339930 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 339991 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 340052 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 340113 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 340174 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 340235 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 340296 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 340357 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 340418 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 340479 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 340540 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 340601 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 340662 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 340723 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 340784 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 340845 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 340906 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //