Array 1 1000965-1000019 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZBO01000001.1 Clostridium baratii strain 2789STDY5834956, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1000964 29 100.0 37 ............................. AGAAATTGTCTAACTTCTTTTAAAATATTCAAAAAAG 1000898 29 100.0 36 ............................. TACTTAATATAAAACTGTGCCATTCCTTCCCATATG 1000833 29 100.0 38 ............................. ATGAAAATTCAATGCAATAATGCTTTTGAGTTTAGATG 1000766 29 100.0 36 ............................. TGATAGAAGATCCTAATTGTACTTTTGAAAATTTAA 1000701 29 100.0 35 ............................. ATGAAAAAACAGGAGCTTTTGTAAAAGGGCACTTA 1000637 29 100.0 37 ............................. TGATGAAGTAGCGAATAATATTACTGAGCATATGAAA 1000571 29 100.0 36 ............................. ATAATATGGATGGTAGAATATACTGGATGTGTTGCA 1000506 29 100.0 37 ............................. TATGTAATCTTCTTCTTCTTTAGTATACTTATGTCTT 1000440 29 100.0 36 ............................. TCATTTTTTAATGTACCTACAATTTTTAATTGTCTA 1000375 29 100.0 36 ............................. ATGTCTGCGACGTATTATTTAAGAATATATAAATTC 1000310 29 100.0 37 ............................. GAGAACCTAAACCATATGTTGCACCTTCATCAAATAT 1000244 29 100.0 36 ............................. GTTGATGACTTGCAAGGAGATCCGTGTTTCTTTATG 1000179 29 100.0 37 ............................. TAAACATTTTAAGTACCTCCGATAAATTTATATTAAT 1000113 29 96.6 37 .T........................... TTTAAAGATGGAGGTCTTAAAGATAAGCAAGTAAGAA 1000047 29 79.3 0 .T.....T...........TGCG...... | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 98.4 37 GCTTTATCTTAACTATGAGGAATGTAAAT # Left flank : TGAGTGTATAGATAAATTAAAAGATATAAACATAATAAAACTAGAAAAAATCAAAATACGAGATACACTTAAAAGTTTTACAGTATCAGTAGGAAAATATGACTTAGAGGTTTTAGGAAAATCAGCATTATATAAAGAAATAGAAATAAGTGAATATGAGAAAATTCCAGTTATAAAATGTGAATATGGAGAATTAGGGTTTATAAGAAGCAAAGTTGAAGATAATAATATATATGATAATTTTTTATAATAAAATTAAGTTTAAGTATTTAGTAGATTAAATGATAAATTAATGATAATATTATAATAATATATTAATTTGCAGTCAATCTAAAAATAATAAGAAGCTAGCTAAAGCTAGTAAAATCAATAAGTGAGCAACACATTTGCTTGGTAGTGAAATTTAATACTAACGGTTTACTGCAAAAGAGATTAGAATAAATGAAAAATGATACTTACAAATGGCTTGAAATGGTGACAAATACTTGTCTATTTTTGGG # Right flank : TTAAGATGATGTTGATTCTAAATCAGTCACGCTCAAAATTAACTTAATTATATTAATGTTGATAAATTATAGTATTAGAAGATAGGGAAGTAGCTATAAAATAGCACTTCCTTTTTCTATATGCTAAAATATGTATATAAAAAAGAAAAGGAGAAAATCCATGAGTTGTATATTTTGTGAGTACAGTAAAGAAGAATATATAGCAGAAAATGATTTATGTTTTGCTATTTTTGATAAATTCCCTGTTAATGAAGGACATGCTCTTATTATTCCTAAGAGACATTTCCAAAATTACTTTGATGCAACAAAAGAAGAGATTGCAGCAATGTATGATTTATCACAAGAAGTTAAACAATTAATTGATAATAAATACAGTCCAGACGGATACAATATTGGAGTTAATGTTAACCATGAAGGAGGTCAAACTATTATGCACCTTCATATGCACATTATTCCAAGATATAAAGGTGATATAGAAGATCCTAGAGGTGGTATTAGAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTATCTTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 1009193-1008103 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZBO01000001.1 Clostridium baratii strain 2789STDY5834956, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================================= ================== 1009192 29 100.0 37 ............................. GGTACTTAATTCTAAGTGTACTGTGCTAGATTTCTTT 1009126 29 100.0 37 ............................. TATGCTGGACCAAATAGAATAAATAAAAGAGGAATAG 1009060 29 100.0 37 ............................. ATGCATTACAAAAGGCTATTGATATGCTAAATTCGAT 1008994 29 100.0 35 ............................. AAATTTAATATTGGGAGAATTTTATGATTAGAGTT 1008930 29 100.0 37 ............................. GGAATATTTATTGGAACGATTGATGATGTAACTTGTT 1008864 29 100.0 37 ............................. TAAGCTAAATCTGAGCTAATTGTATTACAAGAATCCG 1008798 29 100.0 36 ............................. GAACTAAGACAGTATGGATTAGAATATGAGGAAATA 1008733 29 100.0 38 ............................. CCATTAATCTGACCACTATCTTCACCATCAACAGGAGG 1008666 29 100.0 38 ............................. AACGAAATTTTATTAGGACCAGGAGTAGTTTATATAAA 1008599 29 100.0 37 ............................. TGACAATACTATAAAAGAAGTATTTAACAGAACTATT 1008533 29 100.0 36 ............................. TGAAATAATACAATTTAATCTAGTTCTTATCGCTTT 1008468 29 100.0 36 ............................. AACTAGAGAATTGAATGGGTTTTTTGCTATTTAATT 1008403 29 100.0 185 ............................. GAACCTACACTAGTACCAACAGAATATCGTAACTAAGAATAATATAAGTTAACATAATATCCATATTCTTATTTAGATTAGTTATGTTTTATATTAATTATATTTAAAAAACTTTTATGTGAAGGTTTATTATAAAAATTATTGGAAAGAATTATTTGATGACTAATTTTTTATGATTTATAATA 1008189 29 89.7 28 A......C.........A........... TATATAAAATATAAAATAATAGAAAAAA Deletion [1008133] 1008132 29 82.8 0 .......C........AA.....T....G | T [1008106] ========== ====== ====== ====== ============================= ========================================================================================================================================================================================= ================== 15 29 98.2 47 GTTTTATATTAACTATGTGGAATGTAAAT # Left flank : AAGAATATAGACCTTTAAAGGCGTGGTGGTAAAATGTTTGTTATAATTACTTATGATATAAAAATTCAGAGAATAAATAGAGTTAGAAAATTATTAAGAATGTATTTAACGTGGACTCAAAATTCCGTTTTTGAAGGAAAGATAACAGAGTCTAAGCTTCAAAAATGTTTAAACGAAGTTAATAGCCTTATCGATAGAAAAGAAGATTCTATTTATGTATATAGAGTTCAAAATGAAAAAAATATAAAGAAAGACGTTATTGGAGAAGAAAAGAATTTTGATGAATTATTTATTTGATAGTATAATAAAAATATGAGATTTGCAGTAAACCGTAAAAATGATTAGATTGAGCAGAAGCCTTTAAAAATCAAGGATAGAGGTATGTTGTATACAAATTAAAAAAATAAGACTGAAGGTTTACTGCATTTGCTGGGATTATTTTTAGAAAAAATAGTCTATAAATGGCTTAAAATGGTCAAAAAGAGCTTATTAATTTTGGG # Right flank : TGCTGAAAATAATATTTCAGCACTTTATTTTTTATTACAAGTATTTCAAGTAAATTATAAGAAAATGTAATATATATTATTATAAAACTAAAAATAAACAATAATAAACAAATTTTAGGCTTATTTTGAATTTTTAAATTATAATAATTTGAAATATAATAAATTTATTATTTTATATTTAATATAAGGATGATAATATGTATGATATCTAATGAAAAGAAAAATAAGATAATAGAAAGGTTTAAAAATAATGATGATAAAAATATGTCTAAAATTGCTAGGAGACTTAATGTTTCCAGAACTTTTGTTTAGAAGTTATTAAAAGAAAATGGATTGATATAATATCTTGAATAGGTTTAAGTATTAATTTGAAAATTAACTCAATGTTTAATAAAAGTTTATTGAAAGAATAAATTTAAATTCATAATGATGAACTTTTATTATTATGAATTTAAATTTTGCAAAAATATTTTGATTTTAAAATTATTTATTAAATTTTT # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-1.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 24024-23446 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZBO01000008.1 Clostridium baratii strain 2789STDY5834956, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 24023 28 100.0 37 ............................ AACCTATTGAAAATAGGGCATTTTACTTTAAAAAAAG 23958 28 100.0 37 ............................ GTTTTTAAAGTTTTTTATAAAGCATTAAAAGGGAAAG 23893 28 100.0 38 ............................ ATACCAGCAATAACAGGAGCAGAAACACCAGTAGCAAG 23827 28 100.0 38 ............................ TTATAATTCATATTAATGACTTCTTTAACCTTATTATG 23761 28 100.0 36 ............................ TACCTTAAAATATTATCATTACAAATTAAATATTTA 23697 28 89.3 26 ..........G....T...........C GTGATTTTTTATATTTGAAGGTGAAT Deletion [23644] 23643 28 82.1 29 ...........T.T.T.A.A........ TATATTAAATATAAAATTATTACATTTAA 23586 28 85.7 33 .A......GA...C.............. TTAAATATGAAAAAAATCGTAATTAAATAATTT G [23568] 23524 28 78.6 23 ...........T.T.TAA.A........ GAATCTCATTATTGTTATCTATT Deletion [23474] 23473 28 89.3 0 .............T.T.A.......... | ========== ====== ====== ====== ============================ ====================================== ================== 10 28 92.5 33 TTTAATCATTACTATATTAGTTATAAAT # Left flank : GACTACAATTTTTATCAATTGAAGGTAATCAAAATAATTACTTAACTGATACTACTCCTAAAGTAGTAATACTTGGAGAATACAGTTGGGGAAACAATGTATTCTATGGTGTTATAAAAGATAAAGGAATTGATATTGAAGCATTAAAAGAAAGTATTATAGACAATGAAGATTTCAGAATAAGTCCTATTTGGATTGGAATAAGTTCTAAAGTATATAATGAAAATTATAAAGATCAAATTGAAAAATTACAAGAAAGATTAAAAGAAGATTTTATAAAAATAGGTACTGTTGGAGAAGCTTTTAGAAATTACATTGAATTTTTAAAAGAAACCTTTTAATGCAGTATATTGAATTTTATAAATATGTTATGTATCATAGTAAATACAATGGTTTAAGTAGAAATTTATTTCTATATTAAATTCATTACTTATGATTTACTGCAAAAACATTTTTAAGTATATCTAAAAATTAAGTAATAGAGCTGTTTAACTTTAGGG # Right flank : TTGAAAGGAATTCTATATTAAATATTATTTTAAATTAAAAAAGAAAAGAGGTTACTTATATGAAAAAAATAGGTGAAATAATAAATAAATACCCTATGATAAGTTTAATTTTAGCTACTATACTTATTTTAATATTAATGAATTTACTTATACTATTTACTAATTTTATGTTTACAAATGTTTTTGGTGTACAATGTAATTTATCATTTTTAAGAGATGTAATTGGAATTAAAGATGGGAAAATTGATATAATTACAGGGATTTTATTATTAATGTTTACTAGTACAAGCATTTTATTAATAATTTTTAATATTTTGAAGAAGTCTTTAAAATAACTTTATATTTCAATTATTAGGGTGGGGAATTTTTCATAATAGAGTTTATGAGTTACATTGGCTCAACTAACTTAAATATAAATAAAAAAATAATAATAGATAGGTTATTTCAATAAGAACTAACCTATCTATTTTATTTTTAAATATTTATATTTAAGTGGATTT # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAATCATTACTATATTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:89.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //