Array 1 3766-4395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHETD010000004.1 Enterobacter roggenkampii strain 120035 contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3766 28 100.0 32 ............................ TTCCCGTCAGCTCCACGAAACGGAGCCCATAA 3826 28 100.0 32 ............................ TGGCCGCCGCGAACATCTTCCCGGATGAAACT 3886 28 100.0 32 ............................ CGAGTGGGCACGAAAACAGGATATGTACGTAT 3946 28 100.0 33 ............................ CATGCTTATAAAGCCTCTTGTCGTCAAAATCCA 4007 28 100.0 32 ............................ TCCAAAAACGGTATCCGCTATCCGTTCATTAA 4067 28 100.0 32 ............................ ACGCAGCGCGAGCCAATTCCTCCTGTTTCCTT 4127 28 100.0 32 ............................ AAGCGCCTGGCGGGCGCAGAATTCATCACTGC 4187 28 100.0 33 ............................ ATTCTGTATCAGCCGGATAAGTATCACCTGGAA 4248 28 100.0 32 ............................ GCTGGAATCAAAGTGATGGAGTGAGTATAAGG 4308 28 82.1 31 A...A......C...C......C..... ATAGAAAATAAGGCCTAACAGTTCTCGCACC C [4332] 4368 28 71.4 0 ....A...T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 11 28 95.8 32 GTGCTCTGCCGTACAGGCAGCTTAGAAA # Left flank : AACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACACTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTCACCTCCTGAGTAATGTCATTTGTCATGGGTAAGTATAGCCATTTGTCAGGGTGGGTGGAATCGGTGTTTTTGTGAGGGGGATTGATGCGAAGAAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATTTATTGATTTTAAATGAGTATTCTTGGTGGGTAAAAAAGAGGGTCAGAGAAGATTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCA # Right flank : GCTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACTGCGACACAAAAAAATAAGGCCGGGATTAACCCGACCTTTTAAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAACA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8214-9505 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHETD010000051.1 Enterobacter roggenkampii strain 120035 contig00051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8214 28 100.0 32 ............................ CCAGTCATTGGCTGCAGTTTTCAGCAGTGACC 8274 28 100.0 32 ............................ AGTGACAAGGATTTCTTTGAACGCCTTGAGAA 8334 28 100.0 33 ............................ TGTAGAGATAAAGGCGGCCAACCCGGCCAGCAA 8395 28 100.0 33 ............................ TACAAAGGCCGTCGATGCCGTCTGTGTGTTGCT 8456 28 100.0 32 ............................ GTCACACGGTGTCAGTGATGCGTCGACAACGA 8516 28 100.0 32 ............................ AGAGACGAGGCTGAACGGCTTATCTCCTGCAT 8576 28 100.0 32 ............................ AGCTCATCCGAAAAGACATGGGCTTGGCAATC 8636 28 100.0 32 ............................ CGGAGGGGAAGCCATTACCCGGCAAAACCCTT 8696 28 100.0 32 ............................ ACGCCCTGAGTGGCAGCACTATGCCAGTAAAC 8756 28 100.0 32 ............................ AATAGGCCGGAACATTAATTTCGTTGGATGGA 8816 28 100.0 32 ............................ AGGGTCGATCCACTCGCCGCCGATCGCCTTGT 8876 28 100.0 32 ............................ TGATTCGTGCAGCCTAGTCTATTCCGTATAGG 8936 28 100.0 33 ............................ TGGCAGACCAGGAACAAGCGCTTATACATTGGC 8997 28 100.0 32 ............................ TGGCGGCGGCTGAATTTTTGCCGCTGGCAAGC 9057 28 100.0 33 ............................ AGGCCCCGGAGCTGTACGGGCTAAACGTCGCGT 9118 28 100.0 32 ............................ CCAATTCCCGCCAGGCGCAGGAGGCCGCGGCA 9178 28 100.0 32 ............................ AGCATCTGTCTTTTATGCGGTCGCTGCTGAAG 9238 28 100.0 32 ............................ TCCGAGCTGTAGCTGCTATTCCAAAGTGTTAC 9298 28 100.0 32 ............................ AATATGAACAATGCGATGCTCTGCAAGCAGAG 9358 28 100.0 32 ............................ TCTGTAACGCTTTCGGGCTTACGGCATAGCAC 9418 28 100.0 32 ............................ TGTGCAATCCTTTCAGGATTTCGATCACTTCA 9478 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGTTTGCATAAGCTGTTTGGTGGGGTGGGCTTTATCAGCGGTATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATCGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCGCCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCGTGGCTGATGGTGGGATTGGATGAGACATTCGCGCTCGACAAGGTCGGGGCATGGGCGATTGAAAGCCTGGTGTACTTCTTCATCGGCTCGCTGGCAGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAACACCTGCGTGGCGGTAGGGGGTGGAATCTGTTCCGAGGGAAGGGGACTACGGACCCTTTTTTATTGGTGAGTTTTAAGTTGTTGATTTCACAACGGTGAATTGTTGGTGGGGAAAAAAGGGTTTACGGAGAATTTTAGAGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : AGCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCGAATGCCGAACAGGCAGTAGGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAACGTTTATTGTTTATGCGAGGACCAGATCGCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTATACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGGCAGGCCGCCGCCACCGGTACGTTGTTGCTTTCCAGCGCCTCCAGCAGCGTCGTGCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAACGGGTCACGCCGAGCGTTTTCACTTCTTCTTCGACGATAGCCATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 24372-25422 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHETD010000051.1 Enterobacter roggenkampii strain 120035 contig00051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24372 28 100.0 32 ............................ TCCGATATATACTGGATATGCATACAGTAGTT 24432 28 100.0 33 ............................ AGCTCATGCAGTTGCAGCAGGTGCCAGCCAACA 24493 28 100.0 32 ............................ TTCCGGCGCGTCAAATCATGAAACAGGCATTT 24553 28 100.0 33 ............................ TCTACCGTTGCCGCTACCACTGGAACATAGAAT 24614 28 100.0 32 ............................ TTCCTGCATTATCACTGCGCTGTCAGTCGAGC 24674 28 100.0 32 ............................ GGACGGGTTAATAACGCTTCCGGATGGCAAGG 24734 28 100.0 33 ............................ AGCTACCGGCGACTACACCCAAACCCGCGTTTA 24795 28 100.0 32 ............................ ATCGGGGACACCAACAACAAAGAACAGGTCGA 24855 28 100.0 32 ............................ AGCTGGGTTCCGGATCGGCAACAGCAACAGAC 24915 28 100.0 32 ............................ CAAAAGATACCACCGGCTCCGCTGATTCCGCG 24975 28 100.0 32 ............................ TGACGCTTGAAGAAAACCGCTCAATTAACGGC 25035 28 100.0 32 ............................ GGAACTGTCGGTTAATTCGGTTGAATGTGAAC 25095 28 100.0 32 ............................ TGACCAGCAAGCATTTCAGGGGTAACTGGCGG 25155 28 100.0 32 ............................ CCTTATACATGCTGTGTGGACCCTCCATGACC 25215 28 100.0 32 ............................ TGAATCGCCAGCTGAGCGTACTGGAAACCACC 25275 28 100.0 32 ............................ AAATGCAGGGCCATCAGCGCGGAAGCGGATAC 25335 28 100.0 32 ............................ ACCACGGCAACACTCTGCACGGAGCCGTCACG 25395 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : CTCCCGCAAACGCAGCCCGTTTGCCGCTGTCTCGGAGCCTGGCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAAGTGTTGGAATTTGAGGACGAAGCGGAACAACCGCGACAAAAAGAGTGGCTGCTGGAAGACACCGAAACGAAATGTGATTACTGCCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGATCCCAATATGCTGCCGCACCTTACAGGGCTACTCCATGATATTGCGCATTCGATGGCTGCAGATGTCGTTGCGCCTCAACGTGCAGAAACGGTAGTTCACATTATTTCCTGAATGTAATTTGTGGCGTCGGTGACAGACCACCGTCGCCACTGGCTTGACCCTTTTTTTTGATGATTACGTAACTTATTGATTTATAGGATTCTAATTTACGAGTTAGAAAAAAGGGTTTTATGAGCGAAATTTGATTATTTTCTTTTCTAACAATAAGATGGCGTGGTTTCTTTTCA # Right flank : AAAGGCCGCCAGGCTTTGATGCCATGGAAATGGCGTCGCTGCCACACGGAAAGCACAAGTAACAATCTCTCACAAATATTCACTGCGTCGATTTAAAAACGCAATACCATCATACCCACGCTCTCCATTTTCTGATTAAATAAAAATTCCATTCAGGAGTTAATTATATTGCTATTGATATATTATTTGTAAGAATGATACATCAAAGAAAAAAATAATTTTTTGTTTAATTATCACCGAAATTTCCATTCATTTGATATCTATCACATTTGCATTTGTCTTATCTCCGATAACATACGCGCATTCAACACTTTGAAATAAAAGCCGTTGCCATGCCTGCAAATAGCATCACCCCTACAGACTTAAAAACCATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGCGGGCGCGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //