Array 1 116172-121934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHWO010000003.1 Trueperella pyogenes strain DSM 20630 Ga0197550_03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116172 29 100.0 32 ............................. GCCCAATGGCGCACGTTCAGGCGGTCGCGGTT 116233 29 96.6 32 ............................G ACGTCTTTAGCTTTGTGTGGTCTGCTATCTCA 116294 29 100.0 32 ............................. CCGCTCTCAGCCTTCCGTTCCGCTGGCGAATA 116355 29 96.6 32 ............................G TGGGCTTGAGTCAGGCATTCTAGCTGGTCGAG 116416 29 100.0 32 ............................. CAATACCGGGCATGGAGGCAAGCCATAACCCG 116477 29 96.6 32 ............................G CTGACTAGCGAAACTGTGGTGGCGGCGTGGGT 116538 29 96.6 32 ............................G GCTTGGCCGGGTTCGATTGAATGATCCACGCA 116599 29 100.0 32 ............................. ATCCCAATGGGCGATCGGTAATGGGATTGAGC 116660 29 100.0 32 ............................. TTCAGGCCTGGCCATTTCCACGAAGCCTATGT 116721 29 96.6 32 ............................T GACTTAAAGGCTTGGTCAAGGTCAGTAATTTG 116782 29 96.6 32 ............................G GCTGCGCTTTTCGCTAAGTGCATTAGTGCAAT 116843 29 100.0 32 ............................. ACCCCTTGTTTTTCACCGTCTGGGGCATACAC 116904 29 100.0 32 ............................. ACTGACACGATTCGCCCGTGGGGTGCCTCCAT 116965 29 100.0 32 ............................. GGACGCGTGTTTACGAGGGGCGGGCAAAAGTT 117026 29 96.6 32 ............................G GTGGAGCCCGGCCGTACACTGTGCATCACCCA 117087 29 96.6 32 ............................T TTGCATGAATTTTTCAAGCATTTTTATGAATA 117148 29 100.0 32 ............................. CCTGGAATGAGTTCCACCAAAAGCTCTGGCGG 117209 29 100.0 32 ............................. GCGCGCCCCATCAAGAAATATATCAATGCGGT 117270 29 100.0 32 ............................. AATTGCAGGCGGCGGCTGGTGTGGCCAAACCG 117331 29 96.6 32 ............................G AATTAGACCCTCCGGGAGTCATATCCTCGACA 117392 29 100.0 32 ............................. TGCTTCTTATCCAGCACACGATTTAAAACCGT 117453 29 100.0 32 ............................. CCGCCTTGATGATGCCTTGAGCGAGGAACGTA 117514 29 96.6 32 ............................G TAACTGGGCAGGGGGTCAGTACAGGCGGGAAT 117575 29 96.6 32 ............................G TGGGGGGTGTGGCCGGGTACACGCACACGGGG 117636 29 100.0 32 ............................. GCCCCAAACGAGGGTGGCACACCGATCTGGAT 117697 29 100.0 32 ............................. CTCGGCATCGAGCTCTACCCGTGGCAAAAATG 117758 29 100.0 32 ............................. CGATACGCTATCGCATTCTACACATTAAAGAA 117819 29 96.6 32 ............................T CGACTTGTCTTTGTGATAGGGTTTCGTCCATC 117880 29 100.0 32 ............................. GCCGCGCGGATGCTCAACGCCGGGCAGATCCC 117941 29 100.0 32 ............................. GCGGACCGCCACAAACCGTACTGCTTCGATGG 118002 29 100.0 32 ............................. CCGCCCGGGGACAACAGGAGACATTATGAACA 118063 29 96.6 32 ............................T ACACCGACGGGCAGTCGGATACGCTCCAGCTG 118124 29 100.0 32 ............................. GATCATTCAGCGTTAATGTGGCCGCCAGGGTG 118185 29 100.0 32 ............................. GCGGCGCAGCTCGATGGGCTCACCGCCGAATC 118246 29 100.0 32 ............................. TACGTAGCCTGCCTGGTCGATCCAGACGATAC 118307 29 100.0 32 ............................. TTTTAGAAACGCGGTAAATACCGCGTGGGAGG 118368 29 100.0 32 ............................. CGGTTCGGAATCAACGTGAAGGGGCTTCACGA 118429 29 100.0 32 ............................. ACTATTTCGTCTTGTTCAAGGTTGGCATACGT 118490 29 96.6 32 ............................G TGGAATCAATTAAGGCCCTGCAACGGGTCTTG 118551 29 100.0 32 ............................. CAGACGCCGTGCAATCGACTGAGGCGGCCGCC 118612 29 100.0 32 ............................. CGCTTCAGACCTGGCGAGGCCAGCTCAGTGCG 118673 29 96.6 32 ............................G GACGGTCGTGGCGTACGCAGTATCAGCAAATC 118734 29 100.0 32 ............................. GATAAGGAGGCAGCGGCATGAGTCGTCTTTTC 118795 29 100.0 32 ............................. TGGACGTCCTCGATGACCGCGCAGACCGGCAA 118856 29 100.0 32 ............................. GATTCCGGTGATGCCTACGACGCCCTACAGGG 118917 29 100.0 32 ............................. CGGGTTCTATAGTGTAGGGTGCCCACTTTCAC 118978 29 100.0 32 ............................. AATCCAGTTGAAGATTCACAATTCTGGTGGGG 119039 29 100.0 32 ............................. GTCGTTTGGAATGAGGGTGTAGTCAGCTGTGC 119100 29 96.6 32 ............................T CACCCTCAAGCCGGGTCTCACACACGTACGTG 119161 29 100.0 32 ............................. GATTGGCGGGCTCGTACACTCGGCGATGCTCG 119222 29 100.0 32 ............................. GATTGGCGGGCTCGTACACTCGGCGATGCTCG 119283 29 96.6 32 ............................G GAAAATCCGGCTGAGGCAATCACCGCTTTTGT 119344 29 100.0 32 ............................. CCGTGAGCACTTCCAAGCCGTGCTTGACACCG 119405 29 96.6 32 ............................T ATTGCTACGGCTGTGGCCGGGATGGCTGGAGC 119466 29 100.0 32 ............................. GGCATCAAGATCGGCGGCACACGACTTTTCCA 119527 29 100.0 32 ............................. ACCTAGACGAAGAAAGATAAATGCTATGACAA 119588 29 100.0 32 ............................. CATCACTAAAGCAGACGGCGAAACGTGGTTCG 119649 29 100.0 32 ............................. TGCGCGCAGTCGAGTAATAGAACGCAACACGT 119710 29 100.0 32 ............................. AAGTGGCGAATCAAGGGCGAATTTGAAGCACA 119771 29 96.6 32 ............................G CCCCCGATTTATGGGAGGCGTGGTCAAAGCAG 119832 29 100.0 32 ............................. CTCGAATCGTGGAGCACGCTGCCTACAATTGA 119893 29 100.0 32 ............................. CCAAGTACGCCCCAAAACTTTCGCCACCGACA 119954 29 96.6 32 ............................T GAAAGCCCGCCTCACATACAGCCGAAAGAAGC 120015 29 100.0 32 ............................. CGTCGCCCACTCACCGAAGCTCAACGCGCCGA 120076 29 100.0 32 ............................. TGCTTGGAGAGGTTGACGATATTCTCATCTTG 120137 29 96.6 32 ............................G TGTGAAAGAGTTGCAATTCCCTGAATGGGGAA 120198 29 100.0 32 ............................. GCAACGGCGGCTTTTCCGGGGTTGTCCCAAAC 120259 29 100.0 32 ............................. ACACTCGGCAAGCTAACCTCGTGGCTGCCAGA 120320 29 96.6 32 ............................G TTGCGCCTGATGTCAGACAGTGGGGTAATCTA 120381 29 100.0 32 ............................. GCCTCGAGGTCAAAACAGTACCCCACTTGACA 120442 29 100.0 32 ............................. TGTTGGCCAATGATCATGCCCGGTTGATGTTA 120503 29 100.0 32 ............................. CACAGCCGCTACGCCAACCCCCGACAGTTTTA 120564 29 100.0 32 ............................. GCCCGCATCAGGGCAAACAACACCGCACGCGA 120625 29 100.0 32 ............................. AAGGTACGTGCAGCCCCCCTCAGAGCAGTTGC 120686 29 100.0 32 ............................. CCCCATAATTTCACCCACAGCGAACGCAACCC 120747 29 96.6 32 ............................G ATTACGAGTTAATGGTGGATACTGCACGGCAA 120808 29 100.0 32 ............................. GAAAGGAACACAAACTCATGAACGCAATTGAC 120869 29 96.6 32 ............................G TGATTAACGCCCTCGGCGGGCTCGCTGGGCTC 120930 29 100.0 32 ............................. GACCTGAGTTCACCATTACCCCGCTTCAACCC 120991 29 100.0 32 ............................. TGGTACCAGGTAAACGATACGATGTGACGGTG 121052 29 96.6 32 ............................G CGGGCCCTAGTCGAGCTAATCCACACCGCCCG 121113 29 100.0 32 ............................. GCTCATAAAGCTCAAGGGCTGTAGCTAGCACA 121174 29 100.0 32 ............................. GCGCTCGTGGACGCCGGTATTTCTCTGGGTGA 121235 29 96.6 32 ............................G ACGTGACGGTGACACGTGGGTGACAATCGCGA 121296 29 100.0 31 ............................. TTTAGAGGTGATTTTGCTTCCGTGTGCGGAC 121356 29 100.0 32 ............................. GACCTGAGTTCACCATTAGCCCGCTTCAACCC 121417 29 100.0 32 ............................. TGGTACCAGGTAAACGATACGATGTGACGGTG 121478 29 96.6 32 ............................G CAATCACGCCCCGGCGCGGGCCTCAAGATTCC 121539 29 100.0 32 ............................. CCATACAGGATCGGTTCGTGATCGTCCTCGTA 121600 29 96.6 32 ............................T ATCCACGCACGCGCGAAGAATTATCCCTGAGG 121661 29 96.6 32 ........T.................... GTCTACACGCTCAACCCGACCGCCGAAACCGG 121722 29 96.6 32 ............................G TCGATCGCTGAACTTGCTGATGAGGTTCTTGC 121783 29 100.0 32 ............................. TTTCGCTTCCCATCCTCCGTATAAGCAGACGC 121844 29 100.0 32 ............................. AAAGTGGGAACGTGTCCTTCATGGTGGGAGAT 121905 29 89.7 0 ......T...................T.A | C [121930] ========== ====== ====== ====== ============================= ================================ ================== 95 29 98.8 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCGGTACCTGCAGGTCTGCGGGGCGACCTCACGAAATGGCTTATGGAGATCGCACCAGGAGTGTTTGTGGGGACTCCAAGCGCGCGGATACGGGAGCAGATCTGGGCACGCACCGTCGCACTTTGTAAAGACGGCCGGGCAATCATGGTTTGCTCCGCGGATAACGAGCAGGGAATGACGTTTCGAACCCATCGACACGATTGGGAACCCGCAGACTTTGATGGTTTGACCTTAATGATTCGGCCAGATGGTGGACAGAATTCTCAGAACAATCAGCGAAGAACGGGATGGTCGGACGCTAGGCATCTACGCAAAAAGTATTGATAACGACTGAACTGTTTGGGTGTCCACATTTTTGATAGTTCGAGAATTGTGGATTACGCGCGATGGTAGTGGATAGAGTGGATCCTGAGATATCCATTGGGCCATCGTCAGGTAAGGCGCAATAAGTTAAATGTATAATCGAAGTGCTGGCGGCAGAAGTGCTGGTCAGCAACA # Right flank : AGTGACGGTTGGAAAGTAGCCCAGTAGTTGCGTCGTTGATTTTGAGAATCACGCGCACAATGCGAAACTGCACTTCTTCTAAAACCTGCAAACTCGTACACGGCGTCGCGTCCTCCTCGGGTGCCCTCACAATTGCCAGGTGCCAAATCAAGTAGGCCATTGTCAGCTACTAGGAATCTGACAAACGAGAATCAATATCCATATGACGCTGGAGAATTCGTACGACTACCACGGCGTCGTCTTCGCACCGATAGAAGATAACGTGTTGACTGCCTGTCAGGCTGCGGCACGCTGATTCAAGTTCTTTGCGGAGGCGGTCGCGCAGAGGAAAATCTGTCAAGCTCTCTAAGCTAGTCTGGAGTTCTCGCAGATACAGCTCCGCCTGGCAGGGTCCCCATTTTTCTTCCGTATGATCCCTGATATTTGACAGGTCAACCTTGGCTAGTGGTGAGAAAGCGAGTTTCACTGGTGCTGCTTTTCTATGATGAATTAGTCAAAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //